IslandPath Analysis: Psychromonas ingrahamii 37



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.65   STD DEV: 3.86
Psychromonas ingrahamii 37, complete genome - 1..4559598
3545 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.86	0	6451..7047	-	198	119943795	-	Ping_0001	-	putative transposase
2	 35.80	-1	6998..7483	-	161	119943796	-	Ping_0002	-	transposase and inactivated derivative
3	 38.58	0	7861..9195	-	444	119943797	hslU	Ping_0003	-	ATP-dependent protease ATP-binding subunit
4	 41.08	0	9207..9761	-	184	119943798	-	Ping_0004	-	ATP-dependent protease peptidase subunit
5	 39.33	0	10064..10597	-	177	119943799	ftsN	Ping_0005	-	cell division protein FtsN
6	 40.37	0	10601..12349	-	582	119943800	argS	Ping_0006	-	arginyl-tRNA synthetase
7	 40.35	0	12572..13027	-	151	119943801	-	Ping_0007	-	hypothetical protein
8	 42.36	0	13204..15375	-	723	119943802	-	Ping_0008	-	UvrD/REP helicase
9	 35.17	-1	15412..16119	-	235	119943803	-	Ping_0009	-	HAD family hydrolase
10	 39.44	0	16153..17052	-	299	119943804	-	Ping_0010	-	tyrosine recombinase XerC
11	 33.14	-1	17602..18108	+	168	119943805	-	Ping_0011	-	hypothetical protein
12	 35.89	-1	18217..19665	+	482	119943806	-	Ping_0012	-	hypothetical protein
13	 39.11	0	19699..20217	+	172	119943807	-	Ping_0013	-	secreted protein Hcp, potential oxidative stress protein
14	 39.27	0	20228..20935	+	235	119943808	-	Ping_0014	-	hypothetical protein
15	 33.19	-1	20951..22315	+	454	119943809	-	Ping_0015	-	hypothetical protein
16	 29.94	-2	22319..22966	+	215	119943810	-	Ping_0016	-	hypothetical protein
17	 34.68	-1	22981..26403	+	1140	119943811	-	Ping_0017	-	hypothetical protein
18	 37.64	0	26407..28101	+	564	119943812	-	Ping_0018	-	hypothetical protein
19	 37.01	0	28101..28589	+	162	119943813	-	Ping_0019	-	hypothetical protein
20	 33.09	-1	28589..28993	+	134	119943814	-	Ping_0020	-	hypothetical protein
21	 39.21	0	28993..30762	+	589	119943815	-	Ping_0021	-	hypothetical protein
22	 40.15	0	30759..31712	+	317	119943816	-	Ping_0022	-	hypothetical protein
23	 39.67	0	31751..34876	+	1041	119943817	-	Ping_0023	-	Rhs element Vgr protein
24	 41.19	0	34893..37742	+	949	119943818	-	Ping_0024	-	pentapeptide repeat-containing protein
25	 39.54	0	37743..38789	+	348	119943819	-	Ping_0025	-	pentapeptide repeat-containing protein
26	 40.25	0	38873..39523	+	216	119943820	-	Ping_0026	-	hypothetical protein
27	 43.24	0	39545..39958	+	137	119943821	-	Ping_0027	-	hypothetical protein
28	 39.74	0	40134..43757	+	1207	119943822	-	Ping_0028	-	Rhs element Vgr protein
29	 42.89	0	43781..46711	+	976	119943823	-	Ping_0029	-	pentapeptide repeat-containing protein
30	 37.59	0	46717..47796	+	359	119943824	-	Ping_0030	-	pentapeptide repeat-containing protein
31	 41.55	0	47840..48484	+	214	119943825	-	Ping_0031	-	hypothetical protein
32	 44.77	+1	48493..48903	+	136	119943826	-	Ping_0032	-	hypothetical protein
33	 37.94	0	48954..50753	+	599	119943827	-	Ping_0033	-	sensor protein
34	 33.33	-1	50753..51106	+	117	119943828	-	Ping_0034	-	hypothetical protein
35	 32.84	-2	51362..53788	+	808	119943829	-	Ping_0035	-	major facilitator transporter
36	 34.73	-1	53800..54942	+	380	119943830	-	Ping_0036	-	D-alanine--D-alanine ligase
37	 36.82	0	55201..56406	-	401	119943831	-	Ping_0037	-	ABC-type uncharacterized transport system, periplasmic component
38	 32.56	-2	57147..57404	-	85	119943832	-	Ping_0038	-	hypothetical protein
39	 41.43	0	58562..59389	-	275	119943833	-	Ping_0040	-	diaminopimelate epimerase
40	 41.79	0	59442..60707	-	421	119943834	-	Ping_0041	-	diaminopimelate decarboxylase
41	 35.22	-1	61094..61411	+	105	119943835	-	Ping_0042	-	frataxin family protein
42	 41.36	0	61851..62336	+	161	119943836	-	Ping_0043	-	pantetheine-phosphate adenylyltransferase
43	 42.71	0	63117..64823	+	568	119943837	-	Ping_0044	-	hypothetical protein
44	 40.47	0	65289..66059	-	256	119943838	-	Ping_0045	-	short-chain dehydrogenase/reductase SDR
45	 42.70	0	66314..67786	-	490	119943839	-	Ping_0046	-	transcriptional regulator
46	 40.67	0	68054..69061	+	335	119943840	-	Ping_0047	-	taurine ABC transporter, periplasmic binding protein
47	 44.52	+1	69103..69942	+	279	119943841	-	Ping_0048	-	ABC transporter for nitrate/sulfonate/bicarbonate ATP-binding protein
48	 42.20	0	69952..70944	+	330	119943842	-	Ping_0049	-	ABC taurine transporter, binding protein inner membrane component
49	 41.87	0	71683..72420	-	245	119943843	-	Ping_0050	-	hypothetical protein
50	 42.82	0	72640..74052	+	470	119943844	-	Ping_0051	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
51	 44.44	0	74599..75579	-	326	119943845	-	Ping_0052	-	hypothetical protein
52	 43.05	0	76031..76843	-	270	119943846	-	Ping_0053	-	formamidopyrimidine-DNA glycosylase
53	 32.05	-2	77146..77301	-	51	119943847	-	Ping_0054	-	ribosomal protein L33
54	 40.51	0	77313..77549	-	78	119943848	-	Ping_0055	-	ribosomal protein L28
55	 42.33	0	77684..78361	-	225	119943849	-	Ping_0056	-	DNA repair protein RadC
56	 43.28	0	78569..79804	+	411	119943850	-	Ping_0057	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
57	 44.74	+1	79804..80259	+	151	119943851	-	Ping_0058	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
58	 37.15	0	80294..80896	+	200	119943852	slmA	Ping_0059	-	nucleoid occlusion protein
59	 41.58	0	80966..81256	-	96	119943853	-	Ping_0060	-	transcriptional repressor protein MetJ
60	 36.59	-1	81340..83949	-	869	119943854	cyaA	Ping_0061	-	adenylate cyclase
61	 39.37	0	84139..85116	-	325	119943855	-	Ping_0062	-	glycine cleavage T protein (aminomethyl transferase)
62	 42.06	0	85557..85808	+	83	119943856	-	Ping_0063	-	hypothetical protein
63	 42.65	0	86239..87870	-	543	119943857	-	Ping_0064	-	L-aspartate oxidase
64	 39.00	0	88101..88682	+	193	119943858	rpoE	Ping_0065	-	RNA polymerase sigma factor RpoE
65	 36.70	-1	88695..89228	+	177	119943859	-	Ping_0066	-	anti sigma-E protein, RseA
66	 33.33	-1	89413..90420	+	335	119943860	-	Ping_0067	-	sigma E regulatory protein, MucB/RseB
67	 34.00	-1	90424..90873	+	149	119943861	rseC	Ping_0068	-	sigma-E factor regulatory protein RseC
68	 36.22	-1	97662..98561	+	299	119943862	-	Ping_0069	-	transposase, IS4 family protein
69	 32.20	-2	98920..99183	-	87	119943863	-	Ping_0070	-	hypothetical protein
70	 39.80	0	99340..100158	-	272	119943864	-	Ping_0071	-	shikimate 5-dehydrogenase
71	 39.41	0	100251..100826	-	191	119943865	-	Ping_0072	-	ribosome maturation factor
72	 45.10	+1	100832..101341	-	169	119943866	-	Ping_0073	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
73	 39.72	0	101393..101956	-	187	119943867	-	Ping_0074	-	DNA topoisomerase type IA Zn finger domain-containing protein
74	 34.81	-1	101958..102431	-	157	119943868	-	Ping_0075	-	hypothetical protein
75	 40.60	0	102477..103535	-	352	119943869	-	Ping_0076	-	DNA protecting protein DprA
76	 39.15	0	103658..104740	-	360	119943870	-	Ping_0077	-	peptidoglycan-binding LysM
77	 40.28	0	104839..105342	+	167	119943871	-	Ping_0078	-	peptide deformylase
78	 44.48	0	105437..106387	+	316	119943872	-	Ping_0079	-	methionyl-tRNA formyltransferase
79	 43.10	0	106392..107702	+	436	119943873	-	Ping_0080	-	sun protein
80	 41.39	0	107913..109289	+	458	119943874	trkA	Ping_0081	-	potassium transporter peripheral membrane component
81	 40.80	0	109302..110747	+	481	119943875	trkH	Ping_0082	-	potassium uptake protein TrkH
82	 38.03	0	111015..112376	-	453	119943876	-	Ping_0083	-	hypothetical protein
83	 27.45	-2	112376..112630	-	84	119943877	-	Ping_0084	-	hypothetical protein
84	 44.17	0	113145..114980	+	611	119943878	-	Ping_0085	-	D-fructose-6-phosphate amidotransferase
85	 39.96	0	115296..116246	-	316	119943879	-	Ping_0086	-	transaldolase B
86	 44.65	+1	116597..117577	-	326	119943880	-	Ping_0087	-	transcriptional regulator
87	 40.59	0	118212..120098	+	628	119943881	-	Ping_0088	-	PTS system, mannitol-specific IIABC protein
88	 41.34	0	120193..121341	+	382	119943882	-	Ping_0089	-	mannitol-1-phosphate 5-dehydrogenase
89	 36.11	-1	121396..121935	+	179	119943883	mtlR	Ping_0090	-	mannitol repressor protein
90	 40.76	0	122411..123406	-	331	119943884	-	Ping_0091	-	fermentative D-lactate dehydrogenase, NAD-dependent
91	 40.96	0	123735..124835	+	366	119943885	-	Ping_0092	-	hypothetical protein
92	 41.05	0	124919..126550	-	543	119943886	-	Ping_0093	-	phosphoenolpyruvate carboxykinase
93	 38.68	0	126788..127648	-	286	119943887	-	Ping_0094	-	Hsp33 protein
94	 40.49	0	127724..128128	-	134	119943888	-	Ping_0095	-	RNA-binding S4 domain-containing protein
95	 41.37	0	128460..129293	+	277	119943889	-	Ping_0096	-	general secretion pathway protein C
96	 40.87	0	129387..131375	+	662	119943890	-	Ping_0097	-	general secretion pathway protein D
97	 42.19	0	131375..132910	+	511	119943891	-	Ping_0098	-	general secretory pathway protein E
98	 43.58	0	132936..134126	+	396	119943892	-	Ping_0099	-	general secretion pathway protein F
99	 42.76	0	134210..134644	+	144	119943893	-	Ping_0100	-	general secretion pathway protein G
100	 41.21	0	134713..135258	+	181	119943894	-	Ping_0101	-	general secretion pathway protein H
40.65	MEAN

3.86	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.