IslandPath Analysis: Brucella ovis ATCC 25840



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.51   STD DEV: 3.48
Brucella ovis ATCC 25840 chromosome II, complete sequence - 1..1164220
962 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.69	-1	154..1347	+	397	148558266	repC	BOV_A0001	-	replication initiation protein RepC
2	 56.36	0	3112..4110	-	332	148558035	iunH	BOV_A0003	-	inosine-uridine preferring nucleoside hydrolase
3	 63.16	+1	4133..5044	-	303	148557965	-	BOV_A0004	-	ABC transporter, permease protein
4	 61.13	+1	5041..6051	-	336	148558713	-	BOV_A0005	-	putative ABC transporter, permease protein
5	 62.53	+1	6113..7684	-	523	148557854	-	BOV_A0006	-	ABC transporter, ATP-binding protein
6	 55.83	0	7687..8793	-	368	148558348	-	BOV_A0007	-	Bmp family lipoprotein
7	 58.29	0	9037..9645	+	202	148558179	-	BOV_A0009	-	hypothetical protein
8	 62.89	+1	9617..10357	-	246	148558449	-	BOV_A0008	-	putative enterobactin synthetase, component D
9	 61.65	+1	10332..11108	-	258	148557948	entA	BOV_A0010	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
10	 60.94	0	11108..11980	-	290	148558790	entB	BOV_A0011	-	isochorismatase
11	 60.26	0	12032..13780	-	582	148558241	entE	BOV_A0012	-	enterobactin synthase subunit E
12	 61.56	+1	13758..14933	-	391	148558766	entC	BOV_A0013	-	isochorismate synthase
13	 58.84	0	15074..16414	+	446	148558109	-	BOV_A0014	-	putative enterobactin synthetase, component F
14	 57.92	0	16462..17250	-	262	148557981	-	BOV_A0015	-	oxidoreductase, molybdopterin-binding
15	 55.43	0	17247..18047	-	266	148558492	-	BOV_A0016	-	HupC/HyaC/HydC family protein
16	 51.05	-1	18108..18344	-	78	148557842	-	BOV_A0017	-	hypothetical protein
17	 58.41	0	18436..19053	+	205	148558369	-	BOV_A0018	-	ECF subfamily RNA polymerase sigma factor
18	 63.68	+1	19043..19678	+	211	148558229	-	BOV_A0019	-	hypothetical protein
19	 58.57	0	19724..20464	-	246	148558444	-	BOV_A0020	-	GntR family transcriptional regulator
20	 55.44	0	20582..21997	+	471	148558149	-	BOV_A0021	-	putative branched chain amino acid ABC transporter, periplasmic amino acid-binding protein
21	 61.26	+1	22989..24209	+	406	148557921	-	BOV_A0023	-	branched-chain amino acid ABC transporter, permease protein
22	 58.70	0	24209..24961	+	250	148557968	-	BOV_A0024	-	branched-chain amino acid ABC transporter, ATP-binding protein
23	 59.00	0	24961..25677	+	238	148558045	-	BOV_A0025	-	branched-chain amino acid ABC transporter, ATP-binding protein
24	 61.33	+1	25729..26178	+	149	148558620	-	BOV_A0026	-	glyoxalase family protein
25	 59.21	0	26182..26919	+	245	148558742	-	BOV_A0027	-	putative 3-oxoacyl-(acyl-carrier-protein) reductase
26	 63.35	+1	26937..27689	+	250	148558133	-	BOV_A0028	-	short chain dehydrogenase/reductase family oxidoreductase
27	 62.15	+1	27799..29988	+	729	148558786	-	BOV_A0029	-	putative acetoin dehydrogenase, alpha/beta subunit
28	 61.58	+1	31366..32151	+	261	148558018	-	BOV_A0031	-	shikimate dehydrogenase family protein
29	 65.31	+2	32431..32724	+	97	148558153	-	BOV_A0032	-	hypothetical protein
30	 59.27	0	33077..35794	+	905	148558615	mgtA	BOV_A0033	-	magnesium-translocating P-type ATPase
31	 60.78	0	36360..36563	+	67	148557865	-	BOV_A0034	-	hypothetical protein
32	 59.00	0	36565..37281	+	238	148558210	-	BOV_A0035	-	MgtC family protein
33	 50.67	-1	37292..37441	-	49	148558508	-	BOV_A0036	-	hypothetical protein
34	 58.78	0	37413..38426	+	337	148557958	-	BOV_A0037	-	sensor histidine kinase
35	 55.24	0	38423..39061	+	212	148558301	-	BOV_A0038	-	LuxR family DNA-binding response regulator
36	 54.27	0	39447..39809	-	120	148558406	-	BOV_A0040	-	response regulator
37	 46.49	-2	39925..40038	-	37	148558042	-	BOV_A0041	-	hypothetical protein
38	 58.25	0	40128..41018	+	296	148558365	-	BOV_A0042	-	putative formiminoglutamase
39	 61.00	+1	41180..41956	+	258	148557902	-	BOV_A0043	-	inositol monophosphatase family protein
40	 61.14	+1	42007..43002	-	331	148558687	-	BOV_A0044	-	putative lysophospholipase L2
41	 62.16	+1	43352..43750	-	132	148557883	-	BOV_A0045	-	hypothetical protein
42	 48.39	-2	43802..43987	+	61	148558297	-	BOV_A0046	-	hypothetical protein
43	 60.27	0	46526..51277	+	1583	148557839	gltB	BOV_A0049	-	glutamate synthase, large subunit
44	 60.48	0	51359..52813	+	484	148558389	gltD	BOV_A0050	-	glutamate synthase subunit beta
45	 52.92	-1	52858..54261	-	467	148558349	-	BOV_A0051	-	amino acid permease family protein
46	 58.77	0	54479..55630	-	383	148558575	-	BOV_A0052	-	hypothetical protein
47	 57.61	0	55880..56398	-	172	148558474	-	BOV_A0053	-	putative lipoprotein
48	 58.59	0	56544..57632	-	362	148558165	virB11	BOV_A0054	-	P-type DNA transfer ATPase VirB11
49	 58.44	0	57613..58755	-	380	148557830	-	BOV_A0055	-	type IV secretion system protein VirB10
50	 57.59	0	58752..59621	-	289	148558751	virB9	BOV_A0056	-	P-type conjugative transfer protein VirB9
51	 55.69	0	59618..60337	-	239	148558296	-	BOV_A0057	-	type IV secretion system protein VirB8
52	 55.46	0	60677..61720	-	347	148558683	-	BOV_A0058	-	type IV secretion system protein VirB6
53	 55.65	0	61904..62620	-	238	148558741	virB5	BOV_A0059	-	P-type DNA transfer protein VirB5
54	 55.57	0	62625..65120	-	831	148558211	-	BOV_A0060	-	type IV secretion system protein VirB4
55	 54.78	0	65120..65506	-	128	148557907	-	BOV_A0061	-	type IV secretion system protein VirB3
56	 56.29	0	65484..65801	-	105	148558277	-	BOV_A0062	-	type IV secretion system protein VirB2
57	 56.76	0	66237..66953	-	238	148558015	-	BOV_A0063	-	type IV secretion system protein VirB1
58	 59.00	0	67457..68695	-	412	148558066	-	BOV_A0064	-	putative transglycosylase
59	 46.15	-2	68676..68792	+	38	148558613	-	BOV_A0065	-	hypothetical protein
60	 56.94	0	69107..70000	+	297	148558761	galU	BOV_A0066	-	UTP-glucose-1-phosphate uridylyltransferase
61	 60.50	0	70053..71561	-	502	148558397	-	BOV_A0067	-	hypothetical protein
62	 59.54	0	71654..72733	+	359	148557832	-	BOV_A0068	-	sugar isomerase, KpsF/GutQ
63	 57.26	0	72936..73403	-	155	148558190	-	BOV_A0069	-	hypothetical protein
64	 59.17	0	73424..74410	-	328	148558442	-	BOV_A0070	-	SPFH domain-containing protein/band 7 family protein
65	 58.17	0	74543..75601	-	352	148558603	hemH	BOV_A0071	-	ferrochelatase
66	 60.37	0	75739..76119	-	126	148558437	omp10	BOV_A0072	-	lipoprotein Omp10
67	 58.14	0	76261..77691	-	476	148558705	-	BOV_A0073	-	homospermidine synthase
68	 60.25	0	77803..78363	-	186	148558559	-	BOV_A0074	-	hypothetical protein
69	 59.23	0	78417..79586	-	389	148558359	pabB	BOV_A0075	-	para-aminobenzoate synthase component I
70	 56.84	0	79596..81458	-	620	148558781	pepF	BOV_A0076	-	oligoendopeptidase F
71	 63.43	+1	83485..85464	+	659	148557908	-	BOV_A0078	-	hypothetical protein
72	 61.50	+1	85530..86168	-	212	148558463	eda	BOV_A0079	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
73	 59.80	0	86327..86938	-	203	148558286	-	BOV_A0080	-	hypothetical protein
74	 57.52	0	87069..87986	+	305	148558612	-	BOV_A0081	-	rhodanese family protein
75	 56.61	0	88267..89022	+	251	148557970	modA	BOV_A0082	-	molybdate ABC transporter, periplasmic molybdate-binding protein
76	 59.97	0	89033..89719	+	228	148557969	modB	BOV_A0083	-	molybdate ABC transporter permease protein
77	 55.71	0	91530..91739	+	69	148557988	-	BOV_A0086	-	hypothetical protein
78	 45.51	-2	91831..91986	+	51	148558230	-	BOV_A0087	-	hypothetical protein
79	 59.65	0	92682..93764	-	360	148558639	-	BOV_A0088	-	hypothetical protein
80	 54.04	0	93785..94489	-	234	148558483	-	BOV_A0089	-	hypothetical protein
81	 60.36	0	95424..96629	-	401	148558743	-	BOV_A0091	-	amidase
82	 60.23	0	97214..98347	+	377	148558692	-	BOV_A0092	-	ornithine/DAP/arginine decarboxylase family decarboxylase 2
83	 59.74	0	98423..100141	-	572	148558272	-	BOV_A0093	-	putative polysaccharide accessory transport protein
84	 55.44	0	100267..101130	-	287	148557919	-	BOV_A0094	-	hypothetical protein
85	 55.25	0	101127..101888	-	253	148558441	-	BOV_A0095	-	WecB/TagA/CpsF family glycosyl transferase
86	 56.88	0	101889..103043	-	384	148558127	-	BOV_A0096	-	hypothetical protein
87	 53.12	-1	103152..104207	+	351	148558597	-	BOV_A0097	-	glycosyl transferase, group 2 family protein
88	 56.73	0	105474..106610	+	378	148558166	-	BOV_A0100	-	Gfo/Idh/MocA family oxidoreductase
89	 57.71	0	106607..107656	-	349	148557878	-	BOV_A0099	-	Gfo/Idh/MocA family oxidoreductase
90	 60.00	0	107973..109382	+	469	148558279	gnd	BOV_A0101	-	6-phosphogluconate dehydrogenase
91	 58.95	0	109478..110539	-	353	148558001	-	BOV_A0102	-	spermidine/putrescine ABC transporter, ATP-binding protein
92	 55.31	0	110545..111363	-	272	148558094	-	BOV_A0103	-	putative spermidine/putrescine ABC transporter, permease protein
93	 57.21	0	111360..112268	-	302	148558487	-	BOV_A0104	-	acriflavin resistance protein
94	 58.97	0	112441..113544	-	367	148558584	-	BOV_A0105	-	ABC transporter, periplasmic substrate-binding protein
95	 47.92	-2	113770..113865	+	31	148558465	-	BOV_A0106	-	hypothetical protein
96	 58.24	0	113953..115542	-	529	148558457	-	BOV_A0107	-	Bcr/CflA subfamily drug resistance transporter
97	 59.34	0	115635..116876	-	413	148558373	-	BOV_A0108	-	HlyD family secretion protein
98	 58.06	0	116977..117720	+	247	148558287	-	BOV_A0109	-	TetR family transcriptional regulator
99	 52.66	-1	117967..118773	+	268	148558318	-	BOV_A0110	-	LuxR family transcriptional regulator
100	 54.11	0	118831..119268	-	145	148558721	-	BOV_A0111	-	hypothetical protein
57.51	MEAN

3.48	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.