IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.83   STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.84	0	1..1443	+	480	119896293	dnaA	azo0001	-	chromosomal replication initiator protein
2	 65.59	0	1502..2611	+	369	119896294	dnaN	azo0002	-	DNA-directed DNA polymerase
3	 65.26	0	2821..5310	+	829	119896295	gyrB	azo0003	-	DNA gyrase subunit B
4	 63.68	-1	5505..7346	+	613	119896296	hsdM	azo0004	-	site-specific DNA-methyltransferase (adenine-specific)
5	 62.28	-1	7453..8910	+	485	119896297	mloB	azo0005	-	putative restriction modification gene
6	 61.67	-1	8919..9038	+	39	119896298	-	azo0006	-	hypothetical protein
7	 56.44	-2	9035..10384	+	449	119896299	hsdS	azo0007	-	Type I site-specific deoxyribonuclease
8	 64.16	0	10381..11256	+	291	119896300	-	azo0008	-	hypothetical protein
9	 58.41	-2	11468..11794	+	108	119896301	-	azo0009	-	transcriptional regulatory protein
10	 64.29	0	11948..15061	+	1037	119896302	hsdR	azo0010	-	Type I site-specific deoxyribonuclease
11	 69.59	0	15231..16085	-	284	119896303	-	azo0011	-	Short-chain dehydrogenase family protein
12	 70.78	0	16203..17150	+	315	119896304	bdhR	azo0012	-	LysR family transcriptional regulator
13	 72.40	+1	17232..17876	+	214	119896305	rluA1	azo0013	-	pseudouridine synthase A
14	 62.72	-1	18010..18567	-	185	119896306	nifF1	azo0014	-	flavodoxin FldA
15	 73.07	+1	18971..19501	-	176	119896307	-	azo0015	-	hypothetical protein
16	 72.08	+1	19505..19855	-	116	119896308	-	azo0016	-	hypothetical protein
17	 67.72	0	19882..20355	-	157	119896309	-	azo0017	-	hypothetical protein
18	 68.04	0	20480..21061	-	193	119896310	-	azo0018	-	ThiJ/PfpI family protein
19	 70.35	0	21263..22402	+	379	119896311	-	azo0019	-	extracellular ligand binding protein
20	 69.65	0	22404..23309	-	301	119896312	-	azo0020	-	LysR family transcriptional regulator
21	 69.06	0	23470..23928	+	152	119896313	iorA	azo0021	-	isoquinoline 1-oxidoreductase, alpha subunit
22	 70.55	0	23939..26152	+	737	119896314	iorB	azo0022	-	putative isoquinoline 1-oxidoreductase, beta subunit
23	 73.41	+1	26175..27197	+	340	119896315	-	azo0023	-	hypothetical protein
24	 73.51	+1	27194..27763	+	189	119896316	-	azo0024	-	hypothetical protein
25	 70.19	0	28052..28618	+	188	119896317	-	azo0025	-	hypothetical protein
26	 66.45	0	28631..29569	-	312	119896318	acbB	azo0026	-	putative dTDP-glucose 4-6-dehydratase
27	 69.14	0	29590..30477	+	295	119896319	exoU	azo0027	-	glycosyltransferase
28	 67.53	0	30502..30732	-	76	119896320	-	azo0028	-	hypothetical protein
29	 63.81	0	30906..31676	+	256	119896321	-	azo0029	-	hypothetical protein
30	 72.28	+1	31735..32625	-	296	119896322	gltR	azo0030	-	LysR family transcriptional regulator
31	 73.30	+1	32784..34019	+	411	119896323	-	azo0031	-	putative permease member of the MFS transporters
32	 66.46	0	34326..34814	-	162	119896324	-	azo0032	-	hypothetical protein
33	 68.51	0	35113..35601	+	162	119896325	-	azo0033	-	hypothetical protein
34	 69.35	0	35640..37502	+	620	119896326	-	azo0034	-	hypothetical protein
35	 68.29	0	37514..38869	+	451	119896327	-	azo0035	-	hypothetical protein
36	 75.56	+1	38945..40102	+	385	119896328	-	azo0036	-	hypothetical protein
37	 68.85	0	40095..42521	+	808	119896329	-	azo0037	-	RND efflux transporter
38	 70.74	0	42527..43336	+	269	119896330	-	azo0038	-	Short-chain dehydrogenase family protein
39	 62.27	-1	43466..45670	+	734	119896331	-	azo0039	-	hypothetical protein
40	 68.42	0	45701..46612	-	303	119896332	-	azo0040	-	AraC family transcriptional regulator
41	 70.08	0	46800..47561	+	253	119896333	-	azo0041	-	Short-chain dehydrogenase family protein
42	 63.64	-1	47901..48494	+	197	119896334	-	azo0042	-	hypothetical protein
43	 70.17	0	48804..49574	-	256	119896335	-	azo0043	-	hypothetical protein
44	 74.57	+1	49571..50671	-	366	119896336	-	azo0044	-	hypothetical protein
45	 73.71	+1	50668..51462	-	264	119896337	-	azo0045	-	hypothetical protein
46	 71.74	0	51590..52516	-	308	119896338	dehH	azo0046	-	haloacetate dehalogenase
47	 70.50	0	52582..53337	-	251	119896339	-	azo0047	-	hypothetical protein
48	 70.25	0	53315..54151	-	278	119896340	-	azo0048	-	hypothetical protein
49	 76.05	+1	54285..56000	-	571	119896341	-	azo0049	-	hypothetical protein
50	 70.80	0	56050..57162	-	370	119896342	phaZ	azo0050	-	Poly (3-hydroxybutyrate) depolymerase
51	 68.13	0	57268..58020	-	250	119896343	-	azo0051	-	hypothetical protein
52	 73.66	+1	58066..59952	+	628	119896344	-	azo0052	-	hypothetical protein
53	 74.51	+1	59974..61287	-	437	119896345	rstB	azo0053	-	sensor histidine kinase
54	 71.34	0	61284..62054	-	256	119896346	rstA	azo0054	-	two-component response regulator
55	 74.69	+1	62241..62975	+	244	119896347	-	azo0055	-	ABC transporter ATP-binding protein
56	 74.11	+1	62972..64369	+	465	119896348	-	azo0056	-	hypothetical protein
57	 72.72	+1	64362..65171	+	269	119896349	-	azo0057	-	hypothetical protein
58	 75.72	+1	65168..66349	+	393	119896350	-	azo0058	-	hypothetical protein
59	 72.32	+1	66440..71053	-	1537	119896351	-	azo0059	-	hypothetical protein
60	 74.12	+1	71064..71747	-	227	119896352	-	azo0060	-	hypothetical protein
61	 73.27	+1	71744..73438	-	564	119896353	-	azo0061	-	hypothetical protein
62	 71.16	0	73627..75072	+	481	119896354	-	azo0062	-	hypothetical protein
63	 71.36	0	75089..75535	+	148	119896355	-	azo0063	-	hypothetical protein
64	 70.56	0	75546..76649	-	367	119896356	-	azo0064	-	permease
65	 73.93	+1	76751..77287	-	178	119896357	-	azo0065	-	hypothetical protein
66	 73.19	+1	77284..78402	-	372	119896358	-	azo0066	-	enoyl-CoA hydratase/isomerase
67	 70.55	0	78461..79156	+	231	119896359	polC	azo0067	-	DNA-directed DNA polymerase
68	 75.56	+1	79164..79916	-	250	119896360	-	azo0068	-	hypothetical protein
69	 68.77	0	80013..80393	+	126	119896361	-	azo0069	-	globin-like protein
70	 71.89	0	80397..80645	-	82	119896362	-	azo0070	-	hypothetical protein
71	 69.62	0	80784..82139	+	451	119896363	-	azo0071	-	sigma-54 dependent response regulator
72	 71.06	0	82158..84344	+	728	119896364	-	azo0072	-	putative sensor histidine kinase
73	 71.70	0	84372..85583	+	403	119896365	-	azo0073	-	putative MFS permease
74	 72.04	+1	85691..87382	+	563	119896366	-	azo0074	-	hypothetical protein
75	 73.33	+1	87379..87978	+	199	119896367	rpoE	azo0075	-	RNA polymerase sigma factor
76	 78.25	+2	87975..88751	+	258	119896368	-	azo0076	-	hypothetical protein
77	 70.27	0	88772..88993	-	73	119896369	-	azo0077	-	hypothetical protein
78	 71.86	0	89004..89966	-	320	119896370	-	azo0078	-	hypothetical protein
79	 67.41	0	90144..91352	-	402	119896371	rtcB	azo0079	-	rtcB protein
80	 65.37	0	91812..93434	+	540	119896372	prfC	azo0080	-	peptide chain release factor
81	 69.89	0	93454..93981	+	175	119896373	-	azo0081	-	hypothetical protein
82	 68.00	0	94431..95405	-	324	119896374	rdgC	azo0082	-	recombination associated protein
83	 64.96	0	95476..95943	-	155	119896375	-	azo0083	-	hypothetical protein
84	 67.87	0	96022..96768	+	248	119896376	rsuA	azo0084	-	pseudouridylate synthase
85	 71.21	0	97020..98186	+	388	119896377	-	azo0085	-	hypothetical protein
86	 59.32	-2	98247..98804	+	185	119896378	efp	azo0086	-	elongation factor P
87	 75.46	+1	98928..99359	+	143	119896379	-	azo0087	-	hypothetical protein
88	 70.73	0	99435..105044	+	1869	119896380	uvrA1	azo0088	-	putative excinuclease ABC subunit
89	 70.10	0	105090..105788	+	232	119896381	-	azo0089	-	hydrogenase cytochrome b-type subunit
90	 64.73	0	105850..106314	-	154	119896382	cycA1	azo0090	-	cytochrome c'
91	 69.43	0	106574..108199	+	541	119896383	-	azo0091	-	methyl-accepting chemotaxis protein
92	 69.65	0	108207..109646	-	479	119896384	mucD1	azo0092	-	serine protease MucD
93	 69.28	0	109778..111763	-	661	119896385	irgA1	azo0093	-	putative TonB-dependent receptor
94	 68.58	0	111975..112913	+	312	119896386	oxyR	azo0094	-	putative oxyR
95	 66.24	0	112981..115554	-	857	119896387	-	azo0095	-	DNA topoisomerase III
96	 65.81	0	115666..116133	-	155	119896388	-	azo0096	-	hypothetical protein
97	 72.56	+1	116194..117312	-	372	119896389	drpA	azo0097	-	putative DNA processing protein DrpA
98	 65.57	0	117316..118503	-	395	119896390	-	azo0098	-	hypothetical protein
99	 65.48	0	118530..119033	+	167	119896391	def	azo0099	-	peptide deformylase
100	 72.46	+1	119079..120044	+	321	119896392	fmt	azo0100	-	methionyl-tRNA formyltransferase
67.83	MEAN

4.13	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.