IslandPath Analysis: Ehrlichia ruminantium str. Gardel



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.14   STD DEV: 3.39
Ehrlichia ruminantium str. Gardel, complete genome - 1..1499920
950 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.13	0	16..849	-	277	58616728	nadC	ERGA_CDS_00010	-	nicotinate-nucleotide pyrophosphorylase
2	 26.70	-1	957..1544	+	195	58616729	-	ERGA_CDS_00020	-	hypothetical protein
3	 30.23	0	1552..2034	-	160	58616730	ruvC	ERGA_CDS_00030	-	crossover junction endodeoxyribonuclease RuvC
4	 32.24	0	2222..3046	-	274	58616731	coxC	ERGA_CDS_00040	-	putative cytochrome c oxidase polypeptide III
5	 32.44	0	3141..4148	-	335	58616732	hemE	ERGA_CDS_00050	-	uroporphyrinogen decarboxylase
6	 27.84	0	4565..5437	+	290	58616733	-	ERGA_CDS_00060	-	hypothetical protein
7	 27.19	0	5434..5970	-	178	58616734	-	ERGA_CDS_00070	-	hypothetical protein
8	 30.13	0	6339..7523	-	394	161986614	-	ERGA_CDS_00080	-	hypothetical protein
9	 27.07	0	7804..8553	+	249	58616736	-	ERGA_CDS_00090	-	hypothetical protein
10	 30.80	0	8568..9515	+	315	58616737	nadA	ERGA_CDS_00100	-	quinolinate synthetase
11	 32.01	0	9675..10052	-	125	58616738	fdxA	ERGA_CDS_00110	-	ferredoxin
12	 37.60	+2	10263..11528	+	421	58616739	-	ERGA_CDS_00120	-	hypothetical protein
13	 31.00	0	12170..14572	-	800	58616740	virD4	ERGA_CDS_00130	-	putative virD4 protein
14	 33.83	+1	14613..15611	-	332	58616741	virB11	ERGA_CDS_00140	-	VirB11 protein
15	 33.04	0	15635..16975	-	446	58616742	virB10	ERGA_CDS_00150	-	VirB10 protein
16	 26.62	-1	16996..17799	-	267	58616743	trbG	ERGA_CDS_00160	-	putative conjugal transfer protein trbG precursor
17	 30.19	0	17783..18481	-	232	58616744	-	ERGA_CDS_00170	-	hypothetical protein
18	 28.32	0	18637..19752	-	371	58616745	ribA	ERGA_CDS_00180	-	GTP cyclohydrolase II
19	 28.45	0	21573..22637	-	354	58616746	-	ERGA_CDS_00190	-	hypothetical protein
20	 23.75	-1	22713..23192	-	159	58616747	-	ERGA_CDS_00200	-	hypothetical protein
21	 33.08	0	23282..24079	-	265	58616748	dapF	ERGA_CDS_00210	-	diaminopimelate epimerase
22	 23.61	-1	24314..24745	-	143	58616749	-	ERGA_CDS_00220	-	hypothetical protein
23	 30.72	0	25823..27010	+	395	58616750	pgk	ERGA_CDS_00230	-	phosphoglycerate kinase
24	 29.22	0	28450..29616	-	388	58616751	xseA	ERGA_CDS_00240	-	putative exodeoxyribonuclease VII large subunit
25	 26.09	-1	29613..29819	-	68	58616752	xseA	ERGA_CDS_00250	-	hypothetical protein
26	 26.40	-1	29816..30493	-	225	58616753	-	ERGA_CDS_00260	-	hypothetical protein
27	 32.98	0	30762..31616	+	284	161986613	dapD	ERGA_CDS_00270	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
28	 30.76	0	32080..33399	+	439	58616755	trmE	ERGA_CDS_00280	-	tRNA modification GTPase TrmE
29	 24.29	-1	33677..34096	-	139	58616756	-	ERGA_CDS_00290	-	hypothetical protein
30	 29.71	0	35319..35870	-	183	58616757	dfp	ERGA_CDS_00300	-	phosphopantothenoylcysteine decarboxylase
31	 29.74	0	35960..37993	+	677	58616758	recG	ERGA_CDS_00310	-	ATP-dependent DNA helicase RecG
32	 27.83	0	40366..41328	+	320	58616759	-	ERGA_CDS_00320	-	hypothetical protein
33	 31.36	0	43475..43930	-	151	58616760	dksA	ERGA_CDS_00330	-	DNAK suppressor protein
34	 28.05	0	44043..44705	+	220	58616761	ccmb	ERGA_CDS_00340	-	Heme exporter protein B
35	 30.44	0	44840..45772	+	310	58616762	zitB	ERGA_CDS_00350	-	Zinc transporter zitB
36	 26.83	0	46232..46861	+	209	58616763	-	ERGA_CDS_00360	-	hypothetical protein
37	 31.94	0	47509..47796	-	95	58616764	rpsT	ERGA_CDS_00370	-	30S ribosomal protein S20
38	 30.39	0	49747..52329	-	860	58616765	polA	ERGA_CDS_00380	-	DNA polymerase I
39	 28.48	0	53546..53854	+	102	58616766	-	ERGA_CDS_00390	-	hypothetical protein
40	 31.26	0	54184..55101	+	305	58616767	argF	ERGA_CDS_00400	-	ornithine carbamoyltransferase
41	 22.95	-2	55818..56000	+	60	58616768	-	ERGA_CDS_00410	-	hypothetical protein
42	 28.60	0	56001..57119	+	372	58616769	recF	ERGA_CDS_00420	-	recombination protein F
43	 34.22	+1	57685..58476	-	263	58616770	-	ERGA_CDS_00430	-	hypothetical protein
44	 33.70	+1	58496..59041	-	181	58616771	def	ERGA_CDS_00440	-	peptide deformylase
45	 30.85	0	59124..59849	+	241	58616772	plsC	ERGA_CDS_00450	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
46	 31.64	0	60680..61327	+	215	58616773	rpe	ERGA_CDS_00460	-	ribulose-phosphate 3-epimerase
47	 30.58	0	62865..63662	+	265	58616774	-	ERGA_CDS_00470	-	hypothetical protein
48	 28.75	0	63672..64391	+	239	58616775	mkl	ERGA_CDS_00480	-	ribonucleotide ABC transporter ATP-binding protein
49	 28.93	0	64828..66759	+	643	58616776	-	ERGA_CDS_00490	-	hypothetical protein
50	 28.02	0	67363..68340	-	325	58616777	ispB	ERGA_CDS_00500	-	octaprenyl-diphosphate synthase
51	 31.92	0	68778..70190	-	470	58616778	glnA	ERGA_CDS_00510	-	glutamine synthetase I
52	 31.82	0	70559..71815	+	418	58616779	tyrS	ERGA_CDS_00520	-	tyrosyl-tRNA synthetase
53	 31.60	0	71837..73051	+	404	58616780	hemA	ERGA_CDS_00530	-	5-aminolevulinate synthase
54	 28.39	0	73398..73781	-	127	58616781	-	ERGA_CDS_00540	-	hypothetical protein
55	 28.05	0	74623..75492	+	289	58616782	secF	ERGA_CDS_00550	-	preprotein translocase subunit SecF
56	 35.88	+1	76965..77867	-	300	58616783	fbaB	ERGA_CDS_00560	-	fructose-bisphosphate aldolase
57	 32.08	0	78279..88625	+	3448	58616784	-	ERGA_CDS_00570	-	hypothetical protein
58	 30.79	0	89185..90405	+	406	58616785	pdhC	ERGA_CDS_00580	-	branched-chain alpha-keto acid dehydrogenase subunit E2
59	 20.97	-2	90937..91122	+	61	58616786	-	ERGA_CDS_00590	-	hypothetical protein
60	 33.09	0	92566..94221	+	551	58616787	-	ERGA_CDS_00600	-	hypothetical protein
61	 29.65	0	95412..96824	+	470	58616788	-	ERGA_CDS_00610	-	hypothetical protein
62	 32.93	0	98323..100317	+	664	58616789	-	ERGA_CDS_00620	-	hypothetical protein
63	 33.48	0	100658..103450	+	930	58616790	-	ERGA_CDS_00630	-	hypothetical protein
64	 27.66	0	103705..103986	-	93	58616791	-	ERGA_CDS_00640	-	hypothetical protein
65	 33.77	+1	105004..106590	+	528	58616792	guaA	ERGA_CDS_00650	-	bifunctional GMP synthase/glutamine amidotransferase protein
66	 32.77	0	107966..109213	+	415	58616793	gltA	ERGA_CDS_00660	-	citrate synthase
67	 29.08	0	111594..112793	+	399	58616794	-	ERGA_CDS_00670	-	hypothetical protein
68	 32.80	0	115219..117657	+	812	58616795	valS	ERGA_CDS_00680	-	valyl-tRNA synthetase
69	 27.43	0	117706..117993	+	95	58616796	-	ERGA_CDS_00690	-	hypothetical protein
70	 26.74	-1	118042..118329	+	95	58616797	-	ERGA_CDS_00700	-	hypothetical protein
71	 31.10	0	119882..120328	-	148	58616798	smpB	ERGA_CDS_00710	-	SsrA-binding protein
72	 32.08	0	120352..120987	-	211	58616799	ribB	ERGA_CDS_00720	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
73	 33.93	+1	121007..121507	-	166	58616800	greA	ERGA_CDS_00730	-	transcription elongation factor greA
74	 34.06	+1	121540..123063	-	507	58616801	atpA	ERGA_CDS_00740	-	F0F1 ATP synthase subunit alpha
75	 31.40	0	123066..123635	-	189	58616802	atpH	ERGA_CDS_00750	-	ATP synthase delta chain
76	 26.67	-1	124559..124828	-	89	58616803	-	ERGA_CDS_00760	-	hypothetical protein
77	 28.74	0	124819..126060	-	413	58616804	-	ERGA_CDS_00770	-	hypothetical protein
78	 29.60	0	126057..126833	-	258	58616805	-	ERGA_CDS_00780	-	hypothetical protein
79	 31.23	0	126842..128077	-	411	58616806	lolC	ERGA_CDS_00790	-	lipoprotein releasing system transmembrane protein lolC
80	 27.45	0	129371..130390	+	339	58616807	-	ERGA_CDS_00800	-	hypothetical protein
81	 29.16	0	131680..133596	+	638	58616808	cycK	ERGA_CDS_00810	-	cytochrome c-type biogenesis protein CycK
82	 27.52	0	133771..134613	+	280	58616809	-	ERGA_CDS_00820	-	hypothetical protein
83	 30.41	0	136833..138233	-	466	58616810	purF	ERGA_CDS_00830	-	amidophosphoribosyltransferase
84	 28.40	0	138795..139442	-	215	58616811	pth	ERGA_CDS_00840	-	peptidyl-tRNA hydrolase
85	 34.85	+1	139402..140061	-	219	58616812	rplY	ERGA_CDS_00850	-	50S ribosomal protein L25/general stress protein Ctc
86	 28.14	0	141570..142262	-	230	58616813	comF	ERGA_CDS_00860	-	putative competence protein F (DNA transformation protein comF)
87	 31.42	0	142263..143414	-	383	58616814	dapE	ERGA_CDS_00870	-	succinyl-diaminopimelate desuccinylase
88	 33.27	0	145200..146909	-	569	58616815	kefB	ERGA_CDS_00880	-	glutathione-regulated potassium-efflux system protein kefB
89	 29.97	0	146923..147546	-	207	58616816	-	ERGA_CDS_00890	-	hypothetical protein
90	 26.18	-1	147595..148083	-	162	58616817	-	ERGA_CDS_00900	-	hypothetical protein
91	 37.04	+2	149881..150879	-	332	58616818	pdhB	ERGA_CDS_00910	-	pyruvate dehydrogenase subunit beta
92	 28.89	0	152183..154006	-	607	58616819	-	ERGA_CDS_00920	-	hypothetical protein
93	 34.87	+1	154194..155621	+	475	58616820	tldD	ERGA_CDS_00930	-	TldD protein
94	 32.33	0	156165..157256	-	363	58616821	-	ERGA_CDS_00940	-	translation-associated GTPase
95	 31.89	0	157895..158449	-	184	58616822	ispF	ERGA_CDS_00950	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
96	 31.14	0	159569..160297	-	242	58616823	ispD	ERGA_CDS_00960	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
97	 32.25	0	160567..164076	+	1169	58616824	-	ERGA_CDS_00970	-	hypothetical protein
98	 32.82	0	164156..165520	+	454	58616825	-	ERGA_CDS_00980	-	hypothetical protein
99	 34.31	+1	166021..166533	-	170	58616826	purE	ERGA_CDS_00990	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
100	 24.13	-1	166523..167065	-	180	58616827	-	ERGA_CDS_01000	-	hypothetical protein
30.14	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.