IslandPath Analysis: Brucella suis 1330



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.00   STD DEV: 4.33
Brucella suis 1330 chromosome I, complete sequence - 1..2107794
2123 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.23	0	784..2274	+	496	23500917	dnaA	BR0001	-	chromosomal replication initiation protein
2	 58.79	0	2503..3696	+	397	23500918	dnaN	BR0002	-	DNA polymerase III subunit beta
3	 61.30	0	3878..5032	+	384	23500919	recF	BR0003	-	recombination protein F
4	 61.43	+1	5070..5852	+	260	23500920	moeB	BR0004	-	molybdopterin biosynthesis protein MoeB
5	 57.47	0	5869..6825	-	318	23500921	-	BR0005	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
6	 59.10	0	6822..8447	-	541	23500922	-	BR0006	-	ABC transporter, ATP-binding protein
7	 58.16	0	8471..9610	-	379	23500923	-	BR0007	-	ABC transporter, permease protein
8	 55.92	0	9610..10707	-	365	23500924	-	BR0008	-	ABC transporter, permease protein
9	 57.74	0	10819..12633	-	604	23500925	-	BR0009	-	ABC transporter, periplasmic substrate-binding protein, putative
10	 55.97	0	12680..14548	-	622	23500926	-	BR0010	-	ABC transporter, periplasmic substrate-binding protein, putative
11	 53.40	0	14779..15102	-	107	23500927	-	BR0011	-	hypothetical protein
12	 47.76	-2	15148..15348	-	66	23500928	-	BR0012	-	hypothetical protein
13	 36.47	-2	15388..15738	-	116	23500929	-	BR0013	-	hypothetical protein
14	 59.26	0	16003..17109	-	368	23500930	-	BR0014	-	branched-chain amino acid ABC transporter, perisplasmic amino acid-binding protein, putative
15	 52.74	0	17381..17581	+	66	23500931	-	BR0015	-	hypothetical protein
16	 61.64	+1	17578..18372	-	264	23500932	-	BR0016	-	enoyl-CoA hydratase
17	 62.12	+1	19224..21245	-	673	23500933	-	BR0018	-	biotin carboxylase
18	 62.25	+1	21257..22864	-	535	23500934	-	BR0019	-	carboxyl transferase family protein
19	 59.09	0	22864..24012	-	382	23500935	ivd	BR0020	-	isovaleryl-CoA dehydrogenase
20	 59.98	0	24189..26177	-	662	23500936	-	BR0021	-	acetoacetyl-CoA synthetase
21	 53.33	0	26362..26796	-	144	23500937	-	BR0022	-	hypothetical protein
22	 54.81	0	26973..28094	-	373	23500938	-	BR0023	-	hypothetical protein
23	 55.99	0	28617..29000	-	127	23500939	-	BR0024	-	hypothetical protein
24	 61.20	0	29385..30737	+	450	23500940	aroA	BR0025	-	3-phosphoshikimate 1-carboxyvinyltransferase
25	 62.42	+1	30734..31393	+	219	23500941	cmk	BR0026	-	cytidylate kinase
26	 58.02	0	31609..33309	+	566	23500942	rpsA	BR0027	-	30S ribosomal protein S1
27	 59.84	0	33727..34737	-	336	23500943	-	BR0028	-	hypothetical protein
28	 57.33	0	34853..35752	+	299	23500944	-	BR0029	-	LysR family transcriptional regulator
29	 29.17	-2	35746..36321	-	191	23500945	-	BR0030	-	hypothetical protein
30	 55.22	0	36357..37640	-	427	23500946	-	BR0031	-	transglycosylase, putative
31	 60.73	0	37656..38261	-	201	23500947	recR	BR0032	-	recombination protein RecR
32	 59.88	0	38392..38715	-	107	23500948	-	BR0033	-	hypothetical protein
33	 61.80	+1	38740..40548	-	602	23500949	dnaX	BR0034	-	DNA polymerase III subunits gamma and tau
34	 61.73	+1	40829..41233	+	134	23500950	-	BR0035	-	hypothetical protein
35	 60.02	0	41262..42209	+	315	23500951	-	BR0036	-	MutT/nudix family protein
36	 58.68	0	42210..43073	-	287	23500952	pheA	BR0037	-	prephenate dehydratase
37	 60.45	0	43162..43917	-	251	23500953	kdsB	BR0038	-	3-deoxy-manno-octulosonate cytidylyltransferase
38	 56.98	0	44295..44903	+	202	23500954	-	BR0039	-	cytochrome c, membrane-bound
39	 61.70	+1	44948..45913	-	321	23500955	-	BR0040	-	hypothetical protein
40	 50.49	-1	45969..46277	+	102	23500956	-	BR0041	-	hypothetical protein
41	 55.75	0	46440..47465	+	341	23500957	cyoA	BR0042	-	ubiquinol oxidase, subunit II
42	 58.03	0	47545..49524	+	659	23500958	qoxB	BR0043	-	ubiquinol oxidase subunit I
43	 57.94	0	49528..50157	+	209	23500959	-	BR0044	-	ubiquinol oxidase subunit III
44	 55.19	0	50157..50522	+	121	23500960	qoxD	BR0045	-	ubiquinol oxidase subunit IV
45	 50.54	-1	50519..50797	-	92	23500961	-	BR0046	-	hypothetical protein
46	 64.29	+1	50973..51560	+	195	23500962	-	BR0047	-	hypothetical protein
47	 59.27	0	52156..54075	+	639	23500963	-	BR0048	-	hypothetical protein
48	 59.89	0	54264..58811	+	1515	23500964	-	BR0049	-	hypothetical protein
49	 57.44	0	58956..59681	+	241	23500965	-	BR0050	-	putative lipoprotein
50	 55.56	0	59732..59947	-	71	23500966	-	BR0051	-	hypothetical protein
51	 59.52	0	60017..60520	-	167	23500967	-	BR0052	-	hypothetical protein
52	 61.35	+1	60857..61063	-	68	23500968	-	BR0053	-	hypothetical protein
53	 58.61	0	61074..62078	-	334	23500969	-	BR0054	-	hypothetical protein
54	 59.90	0	62213..62611	-	132	23500970	-	BR0055	-	hypothetical protein
55	 58.59	0	62864..63259	-	131	23500971	-	BR0056	-	glyoxalase family protein
56	 62.20	+1	63456..64619	+	387	23500972	-	BR0057	-	mrp-related protein
57	 57.90	0	64824..66455	-	543	23500973	pgm	BR0058	-	phosphoglucomutase
58	 44.62	-2	66511..66696	-	61	23500974	-	BR0059	-	hypothetical protein
59	 59.84	0	66671..67564	-	297	23500975	-	BR0060	-	LysR family transcriptional regulator
60	 54.65	0	67689..68612	+	307	23500976	-	BR0061	-	dienelactone hydrolase domain-containing protein
61	 58.94	0	68685..69383	+	232	23500977	frcK	BR0062	-	putative fructose transport system kinase
62	 58.99	0	69483..70172	+	229	23500978	-	BR0063	-	fumarylacetoacetate hydrolase family protein
63	 52.60	-1	70192..70383	+	63	23500979	-	BR0064	-	hypothetical protein
64	 46.30	-2	70445..70660	+	71	23500980	-	BR0065	-	hypothetical protein
65	 51.85	-1	70826..71014	+	62	23500981	-	BR0066	-	hypothetical protein
66	 62.50	+1	71029..71892	+	287	23500982	-	BR0067	-	transglycosylase SLT domain-containing protein
67	 57.84	0	72078..72734	+	218	23500983	-	BR0068	-	hemolysin III family channel protein
68	 60.42	0	72875..76108	-	1077	23500984	dnaE2	BR0069	-	error-prone DNA polymerase
69	 64.81	+1	76108..77559	-	483	23500985	-	BR0070	-	hypothetical protein
70	 63.89	+1	77585..78448	-	287	23500986	-	BR0071	-	hypothetical protein
71	 52.99	0	78967..81189	+	740	23500987	-	BR0072	-	outer membrane protein
72	 53.73	0	81398..81946	+	182	23500988	-	BR0073	-	hypothetical protein
73	 58.15	0	82025..83245	-	406	23500989	argG	BR0074	-	argininosuccinate synthase
74	 57.74	0	84095..84598	-	167	23500990	-	BR0076	-	hypothetical protein
75	 59.30	0	84632..85867	-	411	23500991	-	BR0077	-	hypothetical protein
76	 51.04	-1	85811..86002	+	63	23500992	-	BR0078	-	hypothetical protein
77	 55.38	0	85987..86181	+	64	23500993	-	BR0079	-	hypothetical protein
78	 57.54	0	86127..86630	-	167	23500994	-	BR0080	-	hypothetical protein
79	 63.28	+1	87070..87453	-	127	23500995	-	BR0081	-	hypothetical protein
80	 54.76	0	87541..87834	-	97	23500996	phhB	BR0082	-	pterin-4-alpha-carbinolamine dehydratase
81	 55.61	0	88061..88666	+	201	23500997	-	BR0083	-	phosphotyrosine protein phosphatase
82	 61.25	0	88576..89166	-	196	23500998	-	BR0084	-	hypothetical protein
83	 56.06	0	89347..90072	-	241	23500999	-	BR0085	-	lipase/acylhydrolase domain-containing protein
84	 61.73	+1	90219..90947	+	242	23501000	-	BR0086	-	ABC transporter, ATP-binding protein
85	 61.65	+1	90944..93493	+	849	23501001	-	BR0087	-	ABC transporter, permease protein
86	 57.99	0	93727..94464	+	245	23501002	-	BR0088	-	hypothetical protein
87	 59.44	0	94579..95118	+	179	23501003	pat	BR0089	-	phosphinothricin N-acetyltransferase
88	 54.48	0	95138..95539	-	133	23501004	-	BR0090	-	hypothetical protein
89	 57.01	0	96089..96823	-	244	23501005	-	BR0091	-	hypothetical protein
90	 56.74	0	96976..97116	-	46	23501006	-	BR0092	-	hypothetical protein
91	 60.16	0	97100..99787	-	895	23501007	acnA	BR0093	-	aconitate hydratase
92	 58.33	0	100131..100778	+	215	23501008	ccmA	BR0094	-	cytochrome c biogenesis protein CcmA
93	 62.31	+1	100778..101443	+	221	23501009	ccmB	BR0095	-	heme exporter protein CcmB
94	 58.40	0	101501..102286	+	261	23501010	ccmC	BR0096	-	heme exporter protein CcmC
95	 56.90	0	102283..102456	+	57	23501011	-	BR0097	-	heme exporter protein D
96	 59.15	0	102453..103064	+	203	23501012	cycY	BR0098	-	thioredoxin family thiol:disulfide interchange protein
97	 61.00	0	103313..105148	-	611	23501013	ilvD	BR0099	-	dihydroxy-acid dehydratase
98	 54.35	0	105330..105467	+	45	23501014	-	BR0100	-	hypothetical protein
99	 61.02	0	105548..105901	-	117	23501015	-	BR0101	-	hypothetical protein
100	 59.52	0	106006..106383	-	125	23501016	-	BR0102	-	response regulator, putative
57.00	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.