IslandPath Analysis: Clostridium beijerinckii NCIMB 8052



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.63   STD DEV: 3.23
Clostridium beijerinckii NCIMB 8052, complete genome - 1..6000632
5020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.15	0	280..1629	+	449	150014893	dnaA	Cbei_0001	-	chromosomal replication initiation protein
2	 26.34	-1	1891..2991	+	366	150014894	-	Cbei_0002	-	DNA polymerase III subunit beta
3	 27.23	-1	3022..3234	+	70	150014895	-	Cbei_0003	-	S4 region, YaaA
4	 24.55	-1	3283..4386	+	367	150014896	recF	Cbei_0004	-	recombination protein F
5	 28.35	0	4386..4646	+	86	150014897	-	Cbei_0005	-	hypothetical protein
6	 33.39	0	4701..6608	+	635	150014898	gyrB	Cbei_0006	-	DNA gyrase subunit B
7	 31.56	0	6632..9118	+	828	150014899	-	Cbei_0007	-	DNA gyrase subunit A
8	 23.84	-2	14767..15282	+	171	150014900	-	Cbei_0008	-	putative metal dependent phosphohydrolase
9	 28.16	0	15297..15818	+	173	150014901	-	Cbei_0009	-	3H domain-containing protein
10	 28.28	0	15821..17206	+	461	150014902	-	Cbei_0010	-	FAD dependent oxidoreductase
11	 28.51	0	17223..17450	+	75	150014903	-	Cbei_0011	-	hypothetical protein
12	 26.74	-1	18350..18865	+	171	150014904	-	Cbei_0012	-	GCN5-related N-acetyltransferase
13	 27.04	-1	18862..22341	+	1159	150014905	-	Cbei_0013	-	ATP-dependent nuclease subunit AddB
14	 28.68	0	22434..26171	+	1245	150014906	-	Cbei_0014	-	recombination helicase AddA
15	 27.16	-1	26242..27423	-	393	150014907	-	Cbei_0015	-	ErfK/YbiS/YcfS/YnhG family protein
16	 23.40	-2	27639..28121	+	160	150014908	-	Cbei_0016	-	hypothetical protein
17	 25.74	-1	28292..29239	+	315	150014909	-	Cbei_0017	-	histidine kinase
18	 26.82	-1	29536..30426	-	296	150014910	-	Cbei_0018	-	phosphatidylserine decarboxylase
19	 27.01	-1	30808..31392	+	194	150014911	-	Cbei_0019	-	TetR family transcriptional regulator
20	 27.76	0	31554..32342	+	262	150014912	-	Cbei_0020	-	HAD family hydrolase
21	 31.27	0	32490..34085	-	531	150014913	-	Cbei_0021	-	ABC transporter related
22	 24.92	-1	34318..34911	-	197	150014914	-	Cbei_0022	-	hypothetical protein
23	 30.09	0	35133..35780	+	215	150014915	-	Cbei_0023	-	hemolysin III family channel protein
24	 32.59	0	36010..36813	+	267	150014916	-	Cbei_0024	-	gamma-glutamyl kinase
25	 33.49	0	36839..38083	+	414	150014917	-	Cbei_0025	-	gamma-glutamyl phosphate reductase
26	 33.06	0	38358..38717	+	119	150014918	-	Cbei_0026	-	methylglyoxal synthase
27	 30.51	0	38976..39755	+	259	150014919	-	Cbei_0027	-	short-chain dehydrogenase/reductase SDR
28	 32.95	0	40396..41445	+	349	150014920	-	Cbei_0028	-	carbamoyl phosphate synthase small subunit
29	 32.46	0	41460..44669	+	1069	150014921	carB	Cbei_0029	-	carbamoyl phosphate synthase large subunit
30	 26.07	-1	44864..45097	+	77	150014922	-	Cbei_0030	-	hypothetical protein
31	 29.37	0	45219..46328	-	369	150014923	-	Cbei_0031	-	metal dependent phosphohydrolase
32	 30.64	0	46730..47584	+	284	150014924	-	Cbei_0032	-	glutamate racemase
33	 35.43	+1	47690..48214	+	174	150014925	-	Cbei_0033	-	peptidylprolyl isomerase
34	 27.42	0	48267..48638	+	123	150014926	-	Cbei_0034	-	hypothetical protein
35	 30.64	0	48640..49308	+	222	150014927	-	Cbei_0035	-	helix-turn-helix domain-containing protein
36	 34.21	+1	49461..52646	+	1061	150014928	-	Cbei_0036	-	peptidoglycan binding domain-containing protein
37	 27.66	0	52779..53747	-	322	150014929	-	Cbei_0037	-	radical SAM domain-containing protein
38	 28.97	0	53805..54881	-	358	150014930	-	Cbei_0038	-	hypothetical protein
39	 33.01	0	55000..55929	+	309	150014931	-	Cbei_0039	-	putative radical SAM protein
40	 28.73	0	55970..56686	+	238	150014932	-	Cbei_0040	-	2-phosphosulfolactate phosphatase
41	 32.42	0	56788..57006	-	72	150014933	-	Cbei_0041	-	BFD/(2Fe-2S)-binding domain-containing protein
42	 28.80	0	57280..57963	+	227	150014934	-	Cbei_0042	-	two component transcriptional regulator
43	 27.93	0	57967..59316	+	449	150014935	-	Cbei_0043	-	integral membrane sensor signal transduction histidine kinase
44	 28.96	0	59470..59835	-	121	150014936	-	Cbei_0044	-	hypothetical protein
45	 35.64	+1	59841..60143	-	100	150014937	-	Cbei_0045	-	hypothetical protein
46	 31.92	0	60737..63850	+	1037	150014938	ileS	Cbei_0046	-	isoleucyl-tRNA synthetase
47	 30.63	0	64112..65110	+	332	150014939	-	Cbei_0047	-	alanine racemase
48	 30.41	0	65349..65792	+	147	150014940	-	Cbei_0048	-	transcriptional regulator, TrmB
49	 32.68	0	65785..67158	+	457	150014941	-	Cbei_0049	-	MATE efflux family protein
50	 27.96	0	67214..67399	-	61	150014942	-	Cbei_0050	-	hypothetical protein
51	 32.81	0	67512..68087	+	191	150014943	-	Cbei_0051	-	nucleoside recognition domain-containing protein
52	 29.69	0	68141..68662	+	173	150014944	-	Cbei_0052	-	nucleoside recognition domain-containing protein
53	 29.08	0	68779..70023	+	414	150014945	-	Cbei_0053	-	peptidase M24
54	 30.52	0	70131..71906	+	591	150014946	-	Cbei_0054	-	peptidase M24
55	 31.48	0	72579..74516	+	645	150014947	-	Cbei_0055	-	methionyl-tRNA synthetase
56	 29.52	0	74848..75660	+	270	150014948	-	Cbei_0056	-	TatD family hydrolase
57	 36.94	+1	75956..77008	+	350	150014949	-	Cbei_0057	-	3D domain-containing protein
58	 32.62	0	77171..77728	+	185	150014950	-	Cbei_0058	-	primase/topoisomerase like protein
59	 30.14	0	77729..78574	+	281	150014951	ksgA	Cbei_0059	-	dimethyladenosine transferase
60	 30.60	0	78744..80903	+	719	150014952	-	Cbei_0060	-	hypothetical protein
61	 27.05	-1	80915..81487	+	190	150014953	-	Cbei_0061	-	hypothetical protein
62	 32.68	0	81707..82477	+	256	150014954	-	Cbei_0062	-	prolipoprotein diacylglyceryl transferase
63	 28.20	0	82467..83303	+	278	150014955	-	Cbei_0063	-	hypothetical protein
64	 34.29	+1	83322..84161	+	279	150014956	-	Cbei_0064	-	Mrp/NBP35 ATP-binding family protein
65	 36.98	+1	84291..84482	+	63	150014957	-	Cbei_0065	-	ferredoxin
66	 33.04	0	84713..85390	-	225	150014958	-	Cbei_0066	-	putative proton-coupled thiamine transporter YuaJ
67	 32.16	0	85951..86799	-	282	150014959	-	Cbei_0067	-	degV family protein
68	 31.39	0	87260..89368	+	702	150014960	-	Cbei_0068	-	anaerobic ribonucleoside triphosphate reductase
69	 33.08	0	89973..91142	+	389	150014961	aksA	Cbei_0069	-	trans-homoaconitate synthase
70	 34.84	+1	91157..93079	+	640	150014962	-	Cbei_0070	-	aconitate hydratase
71	 29.61	0	93285..93794	+	169	150014963	-	Cbei_0071	-	anaerobic ribonucleoside-triphosphate reductase activating protein
72	 29.08	0	93960..94571	+	203	150014964	-	Cbei_0072	-	DNA-3-methyladenine glycosylase
73	 32.19	0	94951..95916	-	321	150014965	-	Cbei_0073	-	glycosyl transferase family protein
74	 29.47	0	95992..97077	-	361	150014966	-	Cbei_0074	-	metal dependent phosphohydrolase
75	 33.52	0	97459..98541	+	360	150014967	-	Cbei_0075	-	phosphoserine aminotransferase
76	 32.26	0	99045..100439	-	464	150014968	asnC	Cbei_0076	-	asparaginyl-tRNA synthetase
77	 30.47	0	100772..101470	-	232	150014969	-	Cbei_0077	-	metallophosphoesterase
78	 32.10	0	101507..102886	-	459	150014970	murC	Cbei_0078	-	UDP-N-acetylmuramate--L-alanine ligase
79	 31.86	0	103174..103989	+	271	150014971	-	Cbei_0079	-	purine operon repressor
80	 31.52	0	104320..104595	+	91	150014972	-	Cbei_0080	-	SpoVG family protein
81	 31.58	0	104791..106158	+	455	150014973	-	Cbei_0081	-	UDP-N-acetylglucosamine pyrophosphorylase
82	 34.27	+1	106206..107171	+	321	150014974	-	Cbei_0082	-	ribose-phosphate pyrophosphokinase
83	 30.28	0	107490..108176	+	228	150014975	-	Cbei_0083	-	two component transcriptional regulator
84	 28.27	0	108177..109598	+	473	150014976	-	Cbei_0084	-	integral membrane sensor signal transduction histidine kinase
85	 31.60	0	109621..110196	+	191	150014977	-	Cbei_0085	-	peptidyl-tRNA hydrolase
86	 31.05	0	110211..113711	+	1166	150014978	-	Cbei_0086	-	transcription-repair coupling factor
87	 31.22	0	113945..115033	+	362	150014979	prsA	Cbei_0087	-	peptidylprolyl isomerase
88	 33.33	0	115288..115836	+	182	150014980	-	Cbei_0088	-	AbrB family transcriptional regulator
89	 29.88	0	115932..117467	+	511	150014981	-	Cbei_0089	-	polysaccharide biosynthesis protein
90	 30.17	0	117485..118936	+	483	150014982	-	Cbei_0090	-	MazG family protein
91	 31.52	0	119157..119432	+	91	150014983	-	Cbei_0091	-	histone family protein DNA-binding protein
92	 32.18	0	119503..119763	+	86	150014984	-	Cbei_0092	-	RNA-binding S4 domain-containing protein
93	 28.57	0	119967..120260	+	97	150014985	-	Cbei_0093	-	YabP family protein
94	 22.39	-2	120270..120662	+	130	150014986	-	Cbei_0094	-	spore cortex biosynthesis protein YabQ
95	 28.12	0	120740..121027	+	95	150014987	-	Cbei_0095	-	septum formation initiator
96	 32.60	0	121177..121587	+	136	150014988	-	Cbei_0096	-	hypothetical protein
97	 30.64	0	123521..125932	+	803	150014989	-	Cbei_0097	-	sporulation stage II, protein E
98	 27.36	-1	126199..127605	+	468	150014990	-	Cbei_0098	-	tRNA(Ile)-lysidine synthetase
99	 28.52	0	127608..128147	+	179	150014991	-	Cbei_0099	-	hypoxanthine phosphoribosyltransferase
100	 35.10	+1	128222..130030	+	602	150014992	-	Cbei_0100	-	ATP-dependent metalloprotease FtsH
30.63	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.