IslandPath Analysis: Acidothermus cellulolyticus 11B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.74   STD DEV: 3.40
Acidothermus cellulolyticus 11B, complete genome - 1..2443540
2157 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.15	-1	75..1517	+	480	117927212	-	Acel_0001	-	chromosomal replication initiator protein DnaA
2	 63.83	0	1921..3084	+	387	117927213	-	Acel_0002	-	DNA polymerase III, beta subunit
3	 65.05	0	3097..4212	+	371	117927214	recF	Acel_0003	-	recombination protein F
4	 68.89	0	4202..4696	+	164	117927215	-	Acel_0004	-	hypothetical protein
5	 63.22	-1	4944..6944	+	666	117927216	gyrB	Acel_0005	-	DNA gyrase subunit B
6	 64.15	0	6983..9487	+	834	117927217	-	Acel_0006	-	DNA gyrase subunit A
7	 65.58	0	9582..10040	+	152	117927218	-	Acel_0007	-	hypothetical protein
8	 62.88	-1	10677..11309	+	210	117927219	-	Acel_0008	-	hypothetical protein
9	 63.39	0	11338..11703	+	121	117927220	-	Acel_0009	-	hypothetical protein
10	 61.37	-1	11700..12020	+	106	117927221	-	Acel_0010	-	hypothetical protein
11	 69.75	0	12206..12724	-	172	117927222	-	Acel_0011	-	hypothetical protein
12	 62.98	-1	12863..13405	+	180	117927223	-	Acel_0012	-	peptidylprolyl isomerase
13	 65.74	0	13409..14272	+	287	117927224	-	Acel_0013	-	rhomboid family protein
14	 62.40	-1	14416..14673	-	85	117927225	-	Acel_0014	-	putative septation inhibitor protein
15	 69.32	0	14804..15595	+	263	117927226	-	Acel_0015	-	hypothetical protein
16	 65.47	0	15592..16341	+	249	117927227	-	Acel_0016	-	sortase family protein
17	 70.11	0	16346..16606	+	86	117927228	-	Acel_0017	-	hypothetical protein
18	 64.40	0	16689..17351	+	220	117927229	-	Acel_0018	-	anthranilate synthase, component II
19	 65.01	0	17343..19091	-	582	117927230	-	Acel_0019	-	serine/threonine protein kinase
20	 64.95	0	19088..20545	-	485	117927231	-	Acel_0020	-	peptidoglycan glycosyltransferase
21	 65.00	0	20542..21921	-	459	117927232	-	Acel_0021	-	cell cycle protein
22	 66.51	0	21918..23183	-	421	117927233	-	Acel_0022	-	protein serine/threonine phosphatases
23	 62.34	-1	23230..23691	-	153	117927234	-	Acel_0023	-	FHA domain-containing protein
24	 69.75	0	23700..24542	-	280	117927235	-	Acel_0024	-	FHA domain-containing protein
25	 66.37	0	24805..26808	-	667	117927236	-	Acel_0025	-	kelch repeat-containing protein
26	 65.03	0	26837..29221	-	794	117927237	-	Acel_0026	-	heavy metal translocating P-type ATPase
27	 67.66	0	29818..30420	-	200	117927238	-	Acel_0027	-	hypothetical protein
28	 67.31	0	30612..31544	-	310	117927239	-	Acel_0028	-	hypothetical protein
29	 67.99	0	31758..33425	+	555	117927240	-	Acel_0029	-	FAD dependent oxidoreductase
30	 64.71	0	33418..34236	-	272	117927241	-	Acel_0030	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
31	 66.18	0	34267..35907	-	546	117927242	-	Acel_0031	-	dehydrogenase catalytic domain-containing protein
32	 65.85	0	35932..36915	-	327	117927243	-	Acel_0032	-	transketolase, central region
33	 66.04	0	36916..38034	-	372	117927244	-	Acel_0033	-	pyruvate dehydrogenase (acetyl-transferring)
34	 71.95	+1	38330..39067	-	245	117927245	-	Acel_0034	-	hypothetical protein
35	 68.71	0	39359..40534	-	391	117927246	-	Acel_0035	-	putative aminotransferase
36	 60.63	-1	41319..42296	+	325	117927247	-	Acel_0036	-	restriction endonuclease
37	 55.87	-2	42409..42723	-	104	117927248	-	Acel_0037	-	hypothetical protein
38	 54.27	-2	42853..43788	-	311	117927249	-	Acel_0038	-	hypothetical protein
39	 59.03	-2	44329..44760	+	143	117927250	-	Acel_0039	-	3-demethylubiquinone-9 3-methyltransferase
40	 65.09	0	44861..45496	-	211	117927251	-	Acel_0040	-	TetR family transcriptional regulator
41	 66.38	0	45635..47398	+	587	117927252	-	Acel_0041	-	Cl- channel, voltage-gated family protein
42	 64.42	0	47540..48028	+	162	117927253	-	Acel_0042	-	OsmC family protein
43	 67.88	0	48159..49064	+	301	117927254	-	Acel_0043	-	alpha/beta hydrolase fold
44	 68.90	0	49171..49752	+	193	117927255	-	Acel_0044	-	MarR family transcriptional regulator
45	 66.19	0	49736..50989	+	417	117927256	-	Acel_0045	-	major facilitator transporter
46	 66.89	0	51104..51544	+	146	117927257	-	Acel_0046	-	hypothetical protein
47	 69.31	0	51537..52898	-	453	117927258	-	Acel_0047	-	low molecular weight phosphotyrosine protein phosphatase
48	 63.71	0	53029..54246	+	405	117927259	-	Acel_0048	-	mandelate racemase/muconate lactonizing protein
49	 67.25	0	54367..55728	+	453	117927260	-	Acel_0049	-	oxidoreductase FAD/NAD(P)-binding subunit
50	 64.02	0	55739..56305	+	188	117927261	-	Acel_0050	-	FMN-binding domain-containing protein
51	 67.06	0	56314..57081	+	255	117927262	-	Acel_0051	-	ApbE family lipoprotein
52	 65.59	0	57212..58969	-	585	117927263	-	Acel_0052	-	thiamine biosynthesis protein ThiC
53	 62.84	-1	59132..60124	-	330	117927264	-	Acel_0053	-	Mg2+ transporter protein, CorA family protein
54	 65.07	0	60128..60565	-	145	117927265	-	Acel_0054	-	hypothetical protein
55	 68.48	0	60562..61002	-	146	117927266	-	Acel_0055	-	hypothetical protein
56	 68.89	0	61004..62260	-	418	117927267	-	Acel_0056	-	response regulator receiver modulated serine phosphatase
57	 69.66	0	62540..63073	+	177	117927268	-	Acel_0057	-	RNA polymerase sigma factor SigL
58	 71.43	+1	63070..63741	+	223	117927269	-	Acel_0058	-	putative transmembrane anti-sigma factor
59	 61.43	-1	64187..65026	+	279	117927270	-	Acel_0059	-	thiosulfate sulfurtransferase
60	 67.70	0	65026..65316	+	96	117927271	-	Acel_0060	-	hypothetical protein
61	 64.90	0	65786..66238	+	150	117927272	-	Acel_0061	-	FUR family nickel uptake regulator
62	 67.33	0	66235..67293	+	352	117927273	-	Acel_0062	-	glycine cleavage T protein (aminomethyl transferase)
63	 66.43	0	67268..67696	-	142	117927274	-	Acel_0063	-	D-tyrosyl-tRNA deacylase
64	 68.52	0	67807..70503	-	898	117927275	-	Acel_0064	-	hypothetical protein
65	 65.28	0	70759..71334	+	191	117927276	-	Acel_0065	-	AmfC protein
66	 66.05	0	71406..73028	-	540	117927277	-	Acel_0066	-	tripeptidyl-peptidase B
67	 71.79	+1	73187..73888	+	233	117927278	-	Acel_0067	-	XRE family transcriptional regulator
68	 69.46	0	73875..74375	+	166	117927279	-	Acel_0068	-	hypothetical protein
69	 64.71	0	74385..75356	+	323	117927280	-	Acel_0069	-	aldo/keto reductase
70	 63.48	0	75364..75645	+	93	117927281	-	Acel_0070	-	hypothetical protein
71	 67.79	0	75668..76201	+	177	117927282	-	Acel_0071	-	hypothetical protein
72	 65.83	0	76150..77826	-	558	117927283	-	Acel_0072	-	beta-N-acetylhexosaminidase
73	 69.34	0	78012..79358	+	448	117927284	-	Acel_0073	-	glycosyl transferase, group 1
74	 66.11	0	79422..79778	+	118	117927285	-	Acel_0074	-	hypothetical protein
75	 66.53	0	79933..80691	+	252	117927286	-	Acel_0075	-	phosphoglycerate mutase
76	 66.99	0	80861..81481	-	206	117927287	-	Acel_0076	-	hypothetical protein
77	 67.90	0	81491..82465	-	324	117927288	-	Acel_0077	-	hypothetical protein
78	 61.08	-1	82505..82987	+	160	117927289	-	Acel_0078	-	CarD family transcriptional regulator
79	 69.86	0	83232..84389	+	385	117927290	-	Acel_0079	-	PilT domain-containing protein
80	 71.31	+1	84386..85117	+	243	117927291	-	Acel_0080	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
81	 72.84	+1	85114..85599	+	161	117927292	-	Acel_0081	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
82	 64.54	0	85642..87051	+	469	117927293	-	Acel_0082	-	cysteinyl-tRNA synthetase
83	 67.46	0	87080..87832	+	250	117927294	-	Acel_0083	-	RNA methyltransferase
84	 63.96	0	87824..89080	-	418	117927295	-	Acel_0084	-	hypothetical protein
85	 66.00	0	89789..90385	-	198	117927296	-	Acel_0085	-	hypothetical protein
86	 57.31	-2	90551..90721	-	56	117927297	-	Acel_0086	-	hypothetical protein
87	 60.34	-1	90809..91045	-	78	117927298	-	Acel_0087	-	hypothetical protein
88	 63.17	-1	91333..92019	-	228	117927299	-	Acel_0088	-	two component transcriptional regulator
89	 63.97	0	92153..93301	-	382	117927300	-	Acel_0089	-	histidine kinase
90	 64.71	0	93451..94113	+	220	117927301	-	Acel_0090	-	phosphate uptake regulator, PhoU
91	 59.52	-2	94210..95385	+	391	117927302	-	Acel_0091	-	phosphate ABC transporter, periplasmic phosphate-binding protein
92	 63.46	0	95393..96391	+	332	117927303	-	Acel_0092	-	phosphate ABC transporter, inner membrane subunit PstC
93	 64.44	0	96388..97284	+	298	117927304	-	Acel_0093	-	phosphate ABC transporter, inner membrane subunit PstA
94	 61.11	-1	97277..98050	+	257	117927305	-	Acel_0094	-	phosphate ABC transporter, ATPase subunit
95	 67.28	0	98084..98896	-	270	117927306	-	Acel_0095	-	beta-lactamase
96	 67.39	0	98924..100591	-	555	117927307	-	Acel_0096	-	diguanylate cyclase
97	 66.03	0	100988..101299	+	103	117927308	-	Acel_0097	-	hypothetical protein
98	 68.56	0	101322..101954	+	210	117927309	-	Acel_0098	-	hypothetical protein
99	 69.68	0	101964..102827	+	287	117927310	-	Acel_0099	-	HAD family hydrolase
100	 65.71	0	103432..104688	+	418	117927311	-	Acel_0100	-	threonine synthase
66.74	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.