IslandPath Analysis: Lactobacillus reuteri F275



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.98   STD DEV: 3.35
Lactobacillus reuteri F275, complete genome - 1..1999618
1900 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.91	0	381..1703	+	440	148543244	-	Lreu_0001	-	chromosomal replication initiator protein DnaA
2	 36.75	0	1879..3021	+	380	148543245	-	Lreu_0002	-	DNA polymerase III, beta subunit
3	 38.74	0	3268..3489	+	73	148543246	-	Lreu_0003	-	S4 region, YaaA
4	 38.58	0	3498..4622	+	374	148543247	-	Lreu_0004	-	DNA replication and repair protein RecF
5	 41.28	0	4619..6568	+	649	148543248	-	Lreu_0005	-	DNA gyrase subunit B
6	 38.96	0	6611..9115	+	834	148543249	-	Lreu_0006	-	DNA gyrase subunit A
7	 39.73	0	9318..9614	+	98	148543250	-	Lreu_0007	-	SSU ribosomal protein S6P
8	 42.02	0	9652..10215	+	187	148543251	-	Lreu_0008	-	single-strand binding protein
9	 47.26	+2	10249..10485	+	78	148543252	rpsR	Lreu_0009	-	30S ribosomal protein S18
10	 38.29	0	10702..12720	+	672	148543253	-	Lreu_0010	-	phosphoesterase domain-containing protein
11	 40.62	0	12726..13178	+	150	148543254	-	Lreu_0011	-	50S ribosomal protein L9P
12	 40.73	0	13212..14603	+	463	148543255	-	Lreu_0012	-	primary replicative DNA helicase
13	 37.49	0	14725..15927	+	400	148543256	-	Lreu_0013	-	major facilitator transporter
14	 34.56	-1	15940..16266	+	108	148543257	-	Lreu_0014	-	hypothetical protein
15	 37.88	0	16371..17249	+	292	148543258	-	Lreu_0015	-	polyphosphate:AMP phosphotransferase
16	 30.65	-2	17279..17836	-	185	148543259	-	Lreu_0016	-	XRE family transcriptional regulator
17	 34.25	-1	18438..18872	+	144	148543260	-	Lreu_0017	-	MarR family transcriptional regulator
18	 38.62	0	18960..20681	+	573	148543261	-	Lreu_0018	-	ABC transporter related
19	 41.38	0	21025..21732	+	235	148543262	-	Lreu_0019	-	two component transcriptional regulator
20	 38.42	0	21746..23611	+	621	148543263	-	Lreu_0020	-	PAS/PAC sensor signal transduction histidine kinase
21	 39.89	0	23589..24884	+	431	148543264	-	Lreu_0021	-	YycH family protein
22	 36.42	0	24897..25739	+	280	148543265	-	Lreu_0022	-	hypothetical protein
23	 42.38	+1	25757..26563	+	268	148543266	-	Lreu_0023	-	beta-lactamase domain-containing protein
24	 38.35	0	26665..27939	+	424	148543267	-	Lreu_0024	-	peptidase S1 and S6, chymotrypsin/Hap
25	 38.15	0	28168..28665	+	165	148543268	-	Lreu_0025	-	phosphatidylglycerophosphatase A
26	 39.21	0	28974..29960	+	328	148543269	-	Lreu_0026	-	hypothetical protein
27	 34.38	-1	30429..30908	+	159	148543270	-	Lreu_0027	-	SPOUT methyltransferase superfamily protein
28	 37.44	0	31051..31269	+	72	148543271	-	Lreu_0028	-	hypothetical protein
29	 38.92	0	31343..31879	+	178	148543272	-	Lreu_0029	-	NADPH-dependent FMN reductase
30	 41.18	0	32098..33270	+	390	148543273	-	Lreu_0030	-	iron-containing alcohol dehydrogenase
31	 36.23	0	33514..34377	+	287	148543274	-	Lreu_0031	-	sugar transport family protein
32	 38.61	0	34492..35268	-	258	148543275	-	Lreu_0032	-	hypothetical protein
33	 41.45	0	35270..36082	-	270	148543276	-	Lreu_0033	-	pyrroline-5-carboxylate reductase
34	 40.54	0	36383..37756	+	457	148543277	-	Lreu_0034	-	aldehyde dehydrogenase
35	 40.07	0	37932..39014	+	360	148543278	-	Lreu_0035	-	RND family efflux transporter MFP subunit
36	 38.48	0	39016..39714	+	232	148543279	-	Lreu_0036	-	ABC transporter related
37	 38.92	0	39701..40936	+	411	148543280	-	Lreu_0037	-	hypothetical protein
38	 42.96	+1	41186..41590	+	134	148543281	-	Lreu_0038	-	hypothetical protein
39	 32.61	-1	41600..41737	+	45	148543282	-	Lreu_0039	-	hypothetical protein
40	 36.70	0	41926..43320	+	464	148543283	-	Lreu_0040	-	hypothetical protein
41	 28.93	-2	43610..44086	+	158	148543284	-	Lreu_0041	-	hypothetical protein
42	 43.12	+1	44169..44597	-	142	148543285	-	Lreu_0042	-	OsmC family protein
43	 43.88	+1	44665..45660	-	331	148543286	-	Lreu_0043	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
44	 42.34	+1	45662..46849	-	395	148543287	-	Lreu_0044	-	aromatic amino acid aminotransferase
45	 42.40	+1	47696..49933	+	745	148543288	-	Lreu_0045	-	ATPase
46	 39.60	0	50822..53677	+	951	148543289	-	Lreu_0046	-	hypothetical protein
47	 40.68	0	53759..54343	-	194	148543290	-	Lreu_0047	-	GCN5-related N-acetyltransferase
48	 40.10	0	54483..55946	+	487	148543291	-	Lreu_0048	-	cardiolipin synthetase 2
49	 41.10	0	56075..59857	+	1260	148543292	-	Lreu_0049	-	DNA helicase/exodeoxyribonuclease V, subunit B
50	 41.25	0	59857..64035	+	1392	148543293	-	Lreu_0050	-	recombination helicase AddA
51	 40.81	0	64036..64971	+	311	148543294	-	Lreu_0051	-	LacI family transcription regulator
52	 45.46	+1	65035..66213	+	392	148543295	-	Lreu_0052	-	acetyl-CoA acetyltransferase
53	 41.78	0	66525..67874	+	449	148543296	-	Lreu_0053	-	major facilitator transporter
54	 40.79	0	67963..70215	+	750	148543297	-	Lreu_0054	-	maltose phosphorylase
55	 38.76	0	70234..70896	+	220	148543298	-	Lreu_0055	-	beta-phosphoglucomutase
56	 37.89	0	70973..71455	+	160	148543299	-	Lreu_0056	-	hypothetical protein
57	 37.69	0	72166..72831	+	221	148543300	-	Lreu_0058	-	two component transcriptional regulator
58	 38.62	0	72843..74090	+	415	148543301	-	Lreu_0059	-	integral membrane sensor signal transduction histidine kinase
59	 39.59	0	74093..75274	+	393	148543302	-	Lreu_0060	-	hypothetical protein
60	 40.87	0	75426..76766	+	446	148543303	-	Lreu_0061	-	glutamate-cysteine ligase
61	 35.95	0	77012..77470	+	152	148543304	-	Lreu_0062	-	transposase IS200-family protein
62	 41.15	0	77669..78397	-	242	148543305	-	Lreu_0063	-	peptidase C26
63	 40.37	0	78516..79382	+	288	148543306	-	Lreu_0064	-	2,5-didehydrogluconate reductase
64	 37.08	0	79521..81308	+	595	148543307	-	Lreu_0065	-	glycerophosphoryl diester phosphodiesterase
65	 41.77	0	81361..81858	-	165	148543308	-	Lreu_0066	-	membrane protein-like protein
66	 40.30	0	82127..83476	+	449	148543309	-	Lreu_0067	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
67	 42.67	+1	83536..84510	-	324	148543310	-	Lreu_0068	-	guanosine 5'-monophosphate oxidoreductase
68	 42.11	0	84706..86004	+	432	148543311	-	Lreu_0069	-	adenylosuccinate synthetase
69	 39.57	0	86115..86900	+	261	148543312	-	Lreu_0070	-	hypothetical protein
70	 41.48	0	87063..87602	+	179	148543313	-	Lreu_0071	-	Uracil phosphoribosyltransferase
71	 35.92	0	87721..88107	-	128	148543314	-	Lreu_0072	-	hypothetical protein
72	 38.82	0	88356..89612	-	418	148543315	-	Lreu_0073	-	IS605 family transposase OrfB
73	 38.16	0	89687..90142	+	151	148543316	-	Lreu_0074	-	transposase IS200-family protein
74	 40.82	0	90267..91001	+	244	148543317	-	Lreu_0075	-	peptidase C26
75	 38.71	0	91007..92401	+	464	148543318	-	Lreu_0076	-	amino acid permease-associated region
76	 25.76	-2	92873..93070	+	65	148543319	-	Lreu_0077	-	hypothetical protein
77	 32.89	-1	93058..93513	+	151	148543320	-	Lreu_0078	-	hypothetical protein
78	 40.77	0	93578..94021	-	147	148543321	-	Lreu_0079	-	hypothetical protein
79	 40.79	0	94121..95662	+	513	148543322	-	Lreu_0080	-	hypothetical protein
80	 39.59	0	95664..97166	+	500	148543323	-	Lreu_0081	-	hypothetical protein
81	 41.86	0	97278..99095	+	605	148543324	-	Lreu_0082	-	hypothetical protein
82	 39.10	0	99279..100961	+	560	148543325	-	Lreu_0083	-	alpha amylase, catalytic region
83	 42.42	+1	100979..102364	+	461	148543326	-	Lreu_0084	-	major facilitator transporter
84	 43.65	+1	102442..105612	-	1056	148543327	carB	Lreu_0085	-	carbamoyl phosphate synthase large subunit
85	 43.34	+1	105605..106693	-	362	148543328	-	Lreu_0086	-	carbamoyl phosphate synthase small subunit
86	 42.72	+1	107075..108448	-	457	148543329	-	Lreu_0087	-	major facilitator transporter
87	 42.73	+1	108608..109618	-	336	148543330	-	Lreu_0088	-	LacI family transcription regulator
88	 45.49	+1	109757..111163	-	468	148543331	-	Lreu_0089	-	RNA methyltransferase
89	 37.75	0	111380..111991	+	203	148543332	-	Lreu_0090	-	NADPH-dependent FMN reductase
90	 41.81	0	111991..113241	+	416	148543333	-	Lreu_0091	-	NADPH-dependent FMN reductase
91	 44.12	+1	113244..114170	+	308	148543334	-	Lreu_0092	-	ApbE family lipoprotein
92	 42.88	+1	114668..116050	+	460	148543335	-	Lreu_0093	-	RNA-directed DNA polymerase (Reverse transcriptase)
93	 41.44	0	121729..123036	+	435	148543336	-	Lreu_0097	-	seryl-tRNA synthetase
94	 38.25	0	123305..124768	+	487	148543337	-	Lreu_0098	-	polar amino acid ABC transporter, inner membrane subunit
95	 41.67	0	124770..125513	+	247	148543338	-	Lreu_0099	-	ABC transporter related
96	 39.11	0	125817..127166	+	449	148543339	-	Lreu_0100	-	amino acid permease-associated region
97	 39.27	0	128117..129328	+	403	148543340	-	Lreu_0101	-	Na+ dependent nucleoside transporter
98	 40.81	0	129409..130317	+	302	148543341	-	Lreu_0102	-	ribonucleoside hydrolase RihC
99	 39.89	0	130420..131304	+	294	148543342	-	Lreu_0103	-	3-hydroxybutyryl-CoA dehydrogenase
100	 40.63	0	131482..132207	+	241	148543343	-	Lreu_0104	-	methyltransferase GidB
38.98	MEAN

3.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.