IslandPath Analysis: Chromohalobacter salexigens DSM 3043



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.09   STD DEV: 4.71
Chromohalobacter salexigens DSM 3043, complete genome - 1..3696649
3298 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 61.76	0	93..1580	+	495	92112137	dnaA	Csal_0001	-	chromosomal replication initiation protein
2	 64.13	0	1630..2733	+	367	92112138	-	Csal_0002	-	DNA polymerase III subunit beta
3	 61.88	0	2832..3917	+	361	92112139	recF	Csal_0003	-	recombination protein F
4	 61.21	0	3937..6354	+	805	92112140	gyrB	Csal_0004	-	DNA gyrase subunit B
5	 61.65	0	6482..7039	-	185	92112141	-	Csal_0005	-	D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase
6	 66.52	0	7384..9450	-	688	92112142	-	Csal_0006	-	glycine--tRNA ligase
7	 62.04	0	9453..10424	-	323	92112143	glyQ	Csal_0007	-	glycyl-tRNA synthetase subunit alpha
8	 60.58	0	10507..11508	+	333	92112144	-	Csal_0008	-	ADP-glyceromanno-heptose 6-epimerase precursor
9	 68.48	0	11501..12550	+	349	92112145	-	Csal_0009	-	lipopolysaccharide heptosyltransferase II
10	 64.76	0	12543..14012	-	489	92112146	-	Csal_0010	-	phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase
11	 62.83	0	14218..14973	-	251	92112147	-	Csal_0011	-	glycosyl transferase family protein
12	 68.07	0	14970..16040	-	356	92112148	-	Csal_0012	-	glycosyl transferase family protein
13	 67.95	0	16071..17240	+	389	92112149	-	Csal_0013	-	glycosyl transferase, group 1
14	 65.31	0	17225..19072	-	615	92112150	-	Csal_0014	-	sulfatase
15	 68.19	0	19085..19804	-	239	92112151	-	Csal_0015	-	3-deoxy-D-manno-octulosonic-acid kinase
16	 67.32	0	19848..20921	+	357	92112152	-	Csal_0016	-	glycosyl transferase family protein
17	 66.81	0	20911..22341	+	476	92112153	-	Csal_0017	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
18	 69.53	+1	22348..23637	+	429	92112154	-	Csal_0018	-	three-deoxy-D-manno-octulosonic-acid transferase-like protein
19	 65.55	0	23672..24385	-	237	92112155	-	Csal_0019	-	ribose-5-phosphate isomerase A
20	 63.83	0	24625..26139	+	504	92112156	-	Csal_0020	-	L-threonine ammonia-lyase
21	 67.15	0	26582..27208	-	208	92112157	-	Csal_0021	-	5-formyltetrahydrofolate cyclo-ligase
22	 65.72	0	27443..27760	-	105	92112158	-	Csal_0022	-	cell division protein ZapA
23	 67.00	0	27974..28576	+	200	92112159	-	Csal_0023	-	hypothetical protein
24	 66.59	0	28632..29969	+	445	92112160	-	Csal_0024	-	aminopeptidase P
25	 70.16	+1	30148..31350	+	400	92112161	-	Csal_0025	-	2-octaprenyl-6-methoxyphenyl hydroxylase
26	 69.53	+1	31347..32603	+	418	92112162	-	Csal_0026	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
27	 64.71	0	32610..34043	-	477	92112163	-	Csal_0027	-	sigma-54 factor, interaction region
28	 62.27	0	34135..35727	-	530	92112164	-	Csal_0028	-	Na+/solute symporter
29	 59.44	0	35767..35946	-	59	92112165	-	Csal_0029	-	hypothetical protein
30	 64.50	0	35997..37337	-	446	92112166	-	Csal_0030	-	acetylornithine deacetylase
31	 66.19	0	37334..38584	-	416	92112167	-	Csal_0031	-	amidase, hydantoinase/carbamoylase
32	 63.52	0	38847..39323	+	158	92112168	-	Csal_0032	-	glutathione-dependent formaldehyde-activating, GFA
33	 64.09	0	39668..41449	+	593	92112169	-	Csal_0033	-	methyl-accepting chemotaxis sensory transducer
34	 63.72	0	41655..43862	+	735	92112170	-	Csal_0034	-	hypothetical protein
35	 48.64	-2	44214..44690	+	158	92112171	-	Csal_0035	-	hypothetical protein
36	 48.82	-2	45076..45540	+	154	92112172	-	Csal_0036	-	GCN5-related N-acetyltransferase
37	 53.25	-2	45665..46141	+	158	92112173	-	Csal_0037	-	OsmC-like protein
38	 60.22	0	46306..46941	+	211	92112174	-	Csal_0038	-	lysine exporter protein LysE/YggA
39	 65.52	0	46996..47868	-	290	92112175	-	Csal_0039	-	hypothetical protein
40	 70.55	+1	48242..49426	-	394	92112176	-	Csal_0040	-	major facilitator transporter
41	 69.51	+1	49618..50145	-	175	92112177	-	Csal_0041	-	TetR family transcriptional regulator
42	 66.51	0	50225..50875	-	216	92112178	-	Csal_0042	-	lysine exporter protein LysE/YggA
43	 66.92	0	50956..51756	-	266	92112179	-	Csal_0043	-	AraC family transcriptional regulator
44	 67.65	0	52018..53340	-	440	92112180	-	Csal_0044	-	carboxyl-terminal protease
45	 67.61	0	53492..54655	-	387	92112181	-	Csal_0045	-	peptidase M23B
46	 68.06	0	54685..56262	-	525	92112182	-	Csal_0046	-	phosphoglyceromutase
47	 62.86	0	56557..56976	+	139	92112183	-	Csal_0047	-	rhodanese-like protein
48	 61.01	0	57048..57542	+	164	92112184	-	Csal_0048	-	protein translocase subunit secB
49	 69.96	+1	57546..58274	+	242	92112185	-	Csal_0049	-	hypothetical protein
50	 64.24	0	58287..59192	-	301	92112186	-	Csal_0050	-	Pirin-like protein
51	 64.48	0	60768..61955	-	395	92112187	-	Csal_0052	-	Type I secretion membrane fusion protein, HlyD
52	 68.38	0	61956..64115	-	719	92112188	-	Csal_0053	-	ABC transporter related
53	 67.82	0	64112..65674	-	520	92112189	-	Csal_0054	-	outer membrane efflux protein
54	 63.28	0	65678..75622	-	3314	92112190	-	Csal_0055	-	putative hemagglutinin/hemolysin-related protein
55	 65.78	0	75861..76766	+	301	92112191	-	Csal_0056	-	RNA binding S1
56	 66.35	0	76845..77798	+	317	92112192	-	Csal_0057	-	glutathione synthase
57	 63.08	0	77917..78474	+	185	92112193	-	Csal_0058	-	hypothetical protein
58	 69.35	+1	78474..78920	+	148	92112194	-	Csal_0059	-	Holliday junction resolvase YqgF
59	 65.08	0	78979..80301	-	440	92112195	-	Csal_0060	-	amino acid permease-associated region
60	 69.38	+1	80377..81186	-	269	92112196	-	Csal_0061	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
61	 67.63	0	81378..82205	+	275	92112197	-	Csal_0062	-	LuxR family transcriptional regulator
62	 65.41	0	82250..83281	-	343	92112198	-	Csal_0063	-	aspartate carbamoyltransferase
63	 64.56	0	83464..84318	+	284	92112199	-	Csal_0064	-	short-chain dehydrogenase/reductase SDR
64	 64.38	0	84609..85658	-	349	92112200	-	Csal_0065	-	homocysteine S-methyltransferase
65	 69.24	+1	85982..86836	-	284	92112201	-	Csal_0066	-	IclR family transcriptional regulator
66	 70.67	+1	86922..87446	-	174	92112202	-	Csal_0067	-	hypothetical protein
67	 66.95	0	87570..87926	+	118	92112203	-	Csal_0068	-	transthyretin
68	 67.88	0	87977..88720	+	247	92112204	-	Csal_0069	-	GntR family transcriptional regulator
69	 65.91	0	88871..89659	-	262	92112205	-	Csal_0070	-	HpcH/HpaI aldolase
70	 65.15	0	89656..91173	-	505	92112206	-	Csal_0071	-	hypothetical protein
71	 67.51	0	91178..91651	-	157	92112207	-	Csal_0072	-	hypothetical protein
72	 67.66	0	91688..92692	-	334	92112208	-	Csal_0073	-	hypothetical protein
73	 65.91	0	92956..94011	+	351	92112209	-	Csal_0074	-	LacI family transcription regulator
74	 65.23	0	94103..95560	-	485	92112210	-	Csal_0075	-	permease for cytosine/purines, uracil, thiamine, allantoin
75	 62.37	0	95608..96957	-	449	92112211	-	Csal_0076	-	permease for cytosine/purines, uracil, thiamine, allantoin
76	 68.31	0	97180..97911	-	243	92112212	-	Csal_0077	-	Asp/Glu racemase
77	 65.39	0	98181..99122	+	313	92112213	-	Csal_0078	-	polysaccharide deacetylase
78	 64.66	0	99140..99988	+	282	92112214	-	Csal_0079	-	hypothetical protein
79	 67.69	0	100011..100499	+	162	92112215	-	Csal_0080	-	ureidoglycolate hydrolase
80	 68.24	0	100528..101292	-	254	92112216	-	Csal_0081	-	hypothetical protein
81	 64.33	0	101307..101777	-	156	92112217	-	Csal_0082	-	membrane protein-like protein
82	 66.50	0	101972..103186	+	404	92112218	-	Csal_0083	-	chromate transporter
83	 59.21	-1	103254..104741	-	495	92112219	-	Csal_0084	-	N-6 DNA methylase
84	 63.91	0	104738..106663	-	641	92112220	-	Csal_0085	-	putative transcriptional regulator
85	 50.46	-2	106660..108276	-	538	92112221	-	Csal_0086	-	restriction modification system DNA specificity protein
86	 60.40	0	108276..111053	-	925	92112222	-	Csal_0087	-	type III restriction enzyme, res subunit
87	 63.70	0	111183..112127	-	314	92112223	-	Csal_0088	-	hypothetical protein
88	 63.51	0	112276..113766	-	496	92112224	-	Csal_0089	-	Na+/solute symporter
89	 62.85	0	113933..114325	-	130	92112225	-	Csal_0090	-	endoribonuclease L-PSP
90	 67.00	0	114354..115853	-	499	92112226	-	Csal_0091	-	N-acyl-D-amino-acid deacylase
91	 65.62	0	115877..116740	-	287	92112227	-	Csal_0092	-	RpiR family transcriptional regulator
92	 67.00	0	116845..118059	+	404	92112228	-	Csal_0093	-	hypothetical protein
93	 63.48	0	118198..120234	+	678	92112229	-	Csal_0094	-	TonB-dependent receptor
94	 68.99	+1	120323..120580	-	85	92112230	-	Csal_0095	-	hypothetical protein
95	 62.83	0	120583..121833	-	416	92112231	-	Csal_0096	-	D-3-phosphoglycerate dehydrogenase
96	 66.99	0	122139..122444	+	101	92112232	-	Csal_0097	-	exodeoxyribonuclease VII small subunit
97	 70.98	+1	122467..123324	+	285	92112233	-	Csal_0098	-	farnesyl-diphosphate synthase
98	 66.72	0	123344..125305	+	653	92112234	-	Csal_0099	-	1-deoxy-D-xylulose-5-phosphate synthase
99	 65.76	0	125331..126104	+	257	92112235	-	Csal_0100	-	heat shock protein DnaJ-like protein
100	 67.16	0	126187..126594	-	135	92112236	-	Csal_0101	-	transthyretin
64.09	MEAN

4.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.