IslandPath Analysis: Burkholderia cenocepacia AU 1054



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.04   STD DEV: 4.34
Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence - 1..3294563
2965 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.81	0	278..1393	-	371	107021563	-	Bcen_0001	-	carboxylate-amine ligase
2	 65.68	0	1408..2622	-	404	107021564	-	Bcen_0002	-	sodium/hydrogen exchanger
3	 59.02	-1	2666..2992	-	108	107021565	-	Bcen_0003	-	hypothetical protein
4	 72.26	+1	3294..5225	-	643	107021566	mnmC	Bcen_0004	-	5-methylaminomethyl-2-thiouridine methyltransferase
5	 60.93	-1	5614..5892	+	92	107021567	-	Bcen_0005	-	histone-like DNA-binding protein
6	 66.24	0	6021..7433	-	470	107021568	-	Bcen_0006	-	cobalamin synthesis protein, P47K
7	 64.04	0	7488..7982	-	164	107021569	-	Bcen_0007	-	lytic transglycosylase, catalytic
8	 66.58	0	8351..10675	+	774	107021570	-	Bcen_0008	-	Type II secretion system gspD
9	 68.67	0	10672..12171	+	499	107021571	-	Bcen_0009	-	Type II secretion system gspE
10	 68.47	0	12176..13393	+	405	107021572	-	Bcen_0010	-	general secretion pathway protein F
11	 71.78	+1	13431..13841	-	136	107021573	-	Bcen_0011	-	hypothetical protein
12	 64.46	0	14017..14469	+	150	107021574	-	Bcen_0012	-	general secretion pathway protein G
13	 71.23	0	14509..15078	+	189	107021575	-	Bcen_0013	-	general secretion pathway protein H
14	 69.65	0	15081..15482	+	133	107021576	-	Bcen_0014	-	general secretion pathway protein I
15	 71.45	+1	15490..16158	+	222	107021577	-	Bcen_0015	-	putative general secretion pathway protein J
16	 70.00	0	16161..17270	+	369	107021578	-	Bcen_0016	-	general secretion pathway protein K
17	 73.44	+1	17297..18670	+	457	107021579	-	Bcen_0017	-	general secretion pathway L
18	 67.85	0	18667..19173	+	168	107021580	-	Bcen_0018	-	general secretion pathway M protein
19	 71.27	0	19174..19998	+	274	107021581	-	Bcen_0019	-	hypothetical protein
20	 72.01	+1	20030..21601	-	523	107021582	-	Bcen_0020	-	RND efflux system, outer membrane lipoprotein, NodT
21	 69.79	0	21883..22170	-	95	107021583	-	Bcen_0021	-	hypothetical protein
22	 67.69	0	22345..22833	+	162	107021584	-	Bcen_0022	-	MarR family transcriptional regulator
23	 67.50	0	23010..24572	+	520	107021585	-	Bcen_0023	-	EmrB/QacA family drug resistance transporter
24	 61.85	-1	24678..24926	+	82	107021586	-	Bcen_0024	-	prevent-host-death protein
25	 61.24	-1	24923..25309	+	128	107021587	-	Bcen_0025	-	PilT protein-like
26	 70.33	0	25334..26260	-	308	107021588	-	Bcen_0026	-	LysR family transcriptional regulator
27	 74.26	+1	26402..26875	+	157	107021589	-	Bcen_0027	-	LrgA
28	 67.91	0	26889..27611	+	240	107021590	-	Bcen_0028	-	LrgB-like protein
29	 68.35	0	27824..28357	+	177	107021591	fliL	Bcen_0029	-	flagellar basal body-associated protein FliL
30	 63.26	0	28380..29378	+	332	107021592	fliM	Bcen_0030	-	flagellar motor switch protein FliM
31	 67.69	0	29371..29859	+	162	107021593	-	Bcen_0031	-	flagellar motor switch FliN
32	 75.43	+1	29856..30437	+	193	107021594	-	Bcen_0032	-	flagellar biosynthesis protein, FliO
33	 65.09	0	30474..31235	+	253	107021595	fliP	Bcen_0033	-	flagellar biosynthesis protein FliP
34	 68.86	0	31253..31525	+	90	107021596	fliQ	Bcen_0034	-	flagellar biosynthesis protein FliQ
35	 68.33	0	31550..32332	+	260	107021597	-	Bcen_0035	-	flagellar biosynthetic protein FliR
36	 67.86	0	32518..33522	+	334	107021598	-	Bcen_0036	-	ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
37	 66.04	0	33644..34441	+	265	107021599	-	Bcen_0037	-	ABC transporter related
38	 66.55	0	34501..35358	+	285	107021600	-	Bcen_0038	-	binding-protein-dependent transport systems inner membrane component
39	 70.39	0	35447..36814	+	455	107021601	-	Bcen_0039	-	periplasmic sensor signal transduction histidine kinase
40	 67.85	0	36828..37505	+	225	107021602	-	Bcen_0040	-	two component transcriptional regulator
41	 63.69	0	37608..38915	+	435	107021603	-	Bcen_0041	-	outer membrane protein (porin)-like
42	 68.05	0	39275..41293	+	672	107021604	-	Bcen_0042	-	site-specific DNA-methyltransferase (adenine-specific)
43	 68.52	0	41293..44319	+	1008	107021605	-	Bcen_0043	-	type III restriction enzyme, res subunit
44	 70.87	0	44585..44941	-	118	107021606	-	Bcen_0044	-	hypothetical protein
45	 69.48	0	45129..45341	-	70	107021607	-	Bcen_0045	-	hypothetical protein
46	 70.96	0	45394..45696	-	100	107021608	-	Bcen_0046	-	hypothetical protein
47	 67.95	0	45990..47003	-	337	107021609	-	Bcen_0047	-	hypothetical protein
48	 69.36	0	46987..48213	-	408	107021610	-	Bcen_0048	-	hypothetical protein
49	 58.97	-1	48218..48451	-	77	107021611	-	Bcen_0049	-	hypothetical protein
50	 66.88	0	48794..49270	+	158	107021612	-	Bcen_0050	-	alkylhydroperoxidase AhpD core
51	 67.35	0	49270..50151	+	293	107021613	-	Bcen_0051	-	RNA polymerase sigma factor SigJ
52	 65.89	0	50254..50769	-	171	107021614	-	Bcen_0052	-	hypothetical protein
53	 58.24	-2	51762..52022	+	86	107021615	-	Bcen_0054	-	hypothetical protein
54	 60.91	-1	52054..52383	+	109	107021616	-	Bcen_0055	-	hypothetical protein
55	 59.30	-1	52402..52659	+	85	107021617	-	Bcen_0056	-	hypothetical protein
56	 58.81	-1	52842..53159	+	105	107021618	-	Bcen_0057	-	hypothetical protein
57	 61.42	-1	53105..53371	-	88	107021619	-	Bcen_0058	-	hypothetical protein
58	 67.72	0	53748..54506	-	252	107021620	-	Bcen_0059	-	putative transmembrane anti-sigma factor
59	 67.43	0	54503..55024	-	173	107021621	-	Bcen_0060	-	ECF subfamily RNA polymerase sigma-24 factor
60	 70.26	0	55183..56268	+	361	107021622	-	Bcen_0061	-	catalase-like
61	 66.10	0	56268..56798	+	176	107021623	-	Bcen_0062	-	cytochrome B561
62	 64.16	0	62822..64897	+	691	107021624	-	Bcen_0063	-	molybdopterin oxidoreductase
63	 64.04	0	65035..66708	+	557	107021625	-	Bcen_0064	-	acyl-CoA synthetase
64	 57.75	-2	66787..67212	+	141	107021626	-	Bcen_0065	-	hypothetical protein
65	 63.11	0	67213..68364	-	383	107021627	-	Bcen_0066	-	porin
66	 68.74	0	68641..69267	+	208	107021628	-	Bcen_0067	-	ubiquinone biosynthesis protein COQ7-like
67	 62.00	-1	69654..70082	+	142	107021629	-	Bcen_0068	-	cell division protein MraZ
68	 65.50	0	70106..71047	+	313	107021630	mraW	Bcen_0069	-	S-adenosyl-methyltransferase MraW
69	 64.04	0	71044..71385	+	113	107021631	-	Bcen_0070	-	cell division protein, FtsL -like
70	 65.21	0	71382..73229	+	615	107021632	-	Bcen_0071	-	peptidoglycan glycosyltransferase
71	 70.74	0	73226..74773	+	515	107021633	murE	Bcen_0072	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
72	 71.86	+1	74770..76176	+	468	107021634	-	Bcen_0073	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
73	 64.19	0	76193..77362	+	389	107021635	-	Bcen_0074	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
74	 69.97	0	77391..78902	+	503	107021636	murD	Bcen_0075	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
75	 66.51	0	78899..80182	+	427	107021637	-	Bcen_0076	-	cell division protein FtsW
76	 71.11	0	80179..81282	+	367	107021638	murG	Bcen_0077	-	N-acetylglucosaminyl transferase
77	 68.88	0	81279..82676	+	465	107021639	murC	Bcen_0078	-	UDP-N-acetylmuramate--L-alanine ligase
78	 68.26	0	82678..83619	+	313	107021640	-	Bcen_0079	-	D-alanine--D-alanine ligase
79	 66.40	0	83639..84391	+	250	107021641	-	Bcen_0080	-	cell division protein FtsQ
80	 64.88	0	84418..85650	+	410	107021642	-	Bcen_0081	-	cell division protein FtsA
81	 66.00	0	85763..86959	+	398	107021643	-	Bcen_0082	-	cell division protein FtsZ
82	 64.89	0	87149..87655	+	168	107021644	-	Bcen_0083	-	redoxin
83	 64.38	0	87896..88813	+	305	107021645	lpxC	Bcen_0084	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
84	 72.54	+1	90257..90733	-	158	107021646	-	Bcen_0086	-	hypothetical protein
85	 65.38	0	90990..93788	+	932	107021647	-	Bcen_0087	-	preprotein translocase subunit SecA
86	 66.59	0	93933..95174	+	413	107021648	argJ	Bcen_0088	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
87	 65.06	0	95194..96063	+	289	107021649	-	Bcen_0089	-	hypothetical protein
88	 67.79	0	96060..96503	+	147	107021650	-	Bcen_0090	-	NUDIX hydrolase
89	 63.68	0	96564..96764	-	66	107021651	-	Bcen_0091	-	hypothetical protein
90	 63.36	0	96793..97548	-	251	107021652	-	Bcen_0092	-	hypothetical protein
91	 68.14	0	97658..98266	-	202	107021653	-	Bcen_0093	-	dephospho-CoA kinase
92	 70.07	0	98268..99179	-	303	107021654	-	Bcen_0094	-	prepilin peptidase
93	 73.02	+1	99224..100435	-	403	107021655	-	Bcen_0095	-	type II secretion system protein
94	 72.03	+1	100432..101718	-	428	107021656	-	Bcen_0096	-	type II secretion system protein E
95	 63.25	0	101790..103163	-	457	107021657	-	Bcen_0097	-	hypothetical protein
96	 66.47	0	103448..104443	-	331	107021658	-	Bcen_0098	-	trans-hexaprenyltranstransferase
97	 56.41	-2	104654..104965	+	103	107021659	rplU	Bcen_0099	-	50S ribosomal protein L21
98	 63.64	0	104990..105253	+	87	107021660	rpmA	Bcen_0100	-	50S ribosomal protein L27
99	 67.57	0	105440..106552	+	370	107021661	obgE	Bcen_0101	-	GTPase ObgE
100	 67.92	0	106642..107760	+	372	107021662	-	Bcen_0102	-	gamma-glutamyl kinase
67.04	MEAN

4.34	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.