IslandPath Analysis: Porphyromonas gingivalis ATCC 33277



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.47   STD DEV: 4.89
Porphyromonas gingivalis ATCC 33277, complete genome - 1..2354886
2090 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.63	0	1..1422	+	473	188993865	dnaA	PGN_0001	-	chromosomal replication initiator protein DnaA
2	 52.88	0	1435..2007	+	190	188993866	-	PGN_0002	-	hypothetical protein
3	 49.90	0	2009..3028	-	339	188993867	-	PGN_0003	-	hypothetical protein
4	 52.48	0	3108..3812	+	234	188993868	-	PGN_0004	-	putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase
5	 51.60	0	3887..5041	-	384	188993869	-	PGN_0005	-	hypothetical protein
6	 51.81	0	5094..6473	-	459	188993870	-	PGN_0006	-	putative Na+driven multidrug efflux pump
7	 49.36	0	6487..6642	+	51	188993871	-	PGN_0007	-	hypothetical protein
8	 55.16	+1	7400..9979	+	859	188993872	clpC	PGN_0008	-	ATP-dependent Clp protease ATP-binding subunit ClpC
9	 53.22	0	10119..13130	+	1003	188993873	-	PGN_0009	-	glycosyl hydrolase family 3
10	 48.88	0	13178..14206	+	342	188993874	-	PGN_0010	-	probable L-threonine-O-3-phosphate decarboxylase
11	 53.05	0	14216..14986	+	256	188993875	-	PGN_0011	-	hypothetical protein
12	 52.74	0	15571..16920	+	449	188993876	-	PGN_0012	-	two-component system response regulator
13	 50.37	0	16930..18267	+	445	188993877	-	PGN_0013	-	putative two-component system sensor histidine kinase
14	 49.76	0	18271..20517	+	748	188993878	-	PGN_0014	-	hypothetical protein
15	 49.93	0	20602..21306	+	234	188993879	-	PGN_0015	-	probable transcriptional regulator
16	 53.29	0	21292..22293	-	333	188993880	-	PGN_0016	-	putative TIM-barrel protein
17	 52.18	0	22290..23966	-	558	188993881	-	PGN_0017	-	sulfate transporter permease
18	 31.58	-2	24234..24404	-	56	188993882	-	PGN_0018	-	hypothetical protein
19	 44.14	0	24770..24880	+	36	188993883	-	PGN_0019	-	hypothetical protein
20	 54.19	+1	24952..25608	+	218	188993884	-	PGN_0020	-	probable DNA-binding protein
21	 53.18	0	25677..26336	+	219	188993885	-	PGN_0021	-	probable hydrolase
22	 51.19	0	26349..29825	+	1158	188993886	-	PGN_0022	-	hypothetical protein
23	 47.28	0	29901..31076	+	391	188993887	-	PGN_0023	-	hypothetical protein
24	 49.90	0	31083..31571	+	162	188993888	-	PGN_0024	-	putative 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
25	 46.41	0	31674..32216	-	180	188993889	-	PGN_0025	-	probable SpoU rRNA methylase family protein
26	 55.97	+1	33069..33545	+	158	188993890	-	PGN_0026	-	putative cytidine deaminase
27	 48.34	0	33765..34850	+	361	188993891	-	PGN_0027	-	transposase in ISPg1
28	 46.00	0	34875..35024	+	49	188993892	-	PGN_0028	-	hypothetical protein
29	 49.74	0	35420..36004	-	194	188993893	-	PGN_0029	-	hypothetical protein
30	 54.22	+1	36142..38688	-	848	188993894	-	PGN_0030	-	beta-mannosidase
31	 53.43	+1	38757..40055	-	432	188993895	-	PGN_0031	-	conserved hypothetical protein with RmuC domain
32	 43.10	-1	40103..40276	+	57	188993896	-	PGN_0032	-	hypothetical protein
33	 48.25	0	40685..40999	-	104	188993897	-	PGN_0033	-	thioredoxin
34	 49.28	0	41048..44734	-	1228	188993898	-	PGN_0034	-	DNA polymerase III alpha subunit
35	 44.81	0	45013..45378	+	121	188993899	rplS	PGN_0035	-	50S ribosomal protein L19
36	 43.94	0	45792..46055	+	87	188993900	-	PGN_0036	-	hypothetical protein
37	 42.50	-1	46140..46259	+	39	188993901	-	PGN_0037	-	hypothetical protein
38	 52.30	0	46617..47897	+	426	188993902	-	PGN_0038	-	serine hydroxymethyltransferase
39	 50.68	0	48048..50387	+	779	188993903	-	PGN_0039	-	beta-hexosaminidase
40	 42.98	-1	50737..50850	-	37	188993904	-	PGN_0040	-	hypothetical protein
41	 51.63	0	51051..53105	+	684	188993905	htpG	PGN_0041	-	heat shock protein 90
42	 50.76	0	53288..54142	-	284	188993906	-	PGN_0042	-	probable phosphatidate cytidylyltransferase
43	 52.08	0	54171..56192	-	673	188993907	-	PGN_0043	-	putative transmembrane AAA-metalloprotease FtsH
44	 49.37	0	56393..57496	-	367	188993908	-	PGN_0044	-	GTP-binding protein
45	 43.64	0	57515..57679	-	54	188993909	-	PGN_0045	-	hypothetical protein
46	 44.19	0	58549..58815	+	88	188993910	-	PGN_0046	-	hypothetical protein
47	 36.99	-2	58828..59046	+	72	188993911	-	PGN_0047	-	hypothetical protein
48	 45.08	0	59059..59475	+	138	188993912	-	PGN_0048	-	hypothetical protein
49	 46.33	0	59497..60027	+	176	188993913	-	PGN_0049	-	probable anti-restriction protein
50	 45.49	0	60044..61318	+	424	188993914	-	PGN_0050	-	hypothetical protein
51	 45.49	0	61345..61599	+	84	188993915	-	PGN_0051	-	hypothetical protein
52	 48.48	0	61604..61834	+	76	188993916	-	PGN_0052	-	hypothetical protein
53	 35.70	-2	62092..63318	+	408	188993917	-	PGN_0053	-	hypothetical protein
54	 38.77	-1	63320..63724	+	134	188993918	-	PGN_0054	-	hypothetical protein
55	 50.97	0	63785..64300	-	171	188993919	-	PGN_0055	-	probable lysozyme
56	 48.27	0	64284..64745	-	153	188993920	-	PGN_0056	-	probable conserved protein found in conjugate transposon
57	 50.99	0	64770..65624	-	284	188993921	traP	PGN_0057	-	probable conserved protein found in conjugate transposon TraP
58	 52.82	0	65624..66208	-	194	188993922	-	PGN_0058	-	probable conserved protein found in conjugate transposon
59	 53.09	0	66210..67130	-	306	188993923	traN	PGN_0059	-	conserved protein found in conjugate transposon TraN
60	 53.07	0	67169..68536	-	455	188993924	traM	PGN_0060	-	conserved protein found in conjugate transposon TraM
61	 48.95	0	68487..68819	-	110	188993925	-	PGN_0061	-	hypothetical protein
62	 51.60	0	68816..69439	-	207	188993926	traK	PGN_0062	-	putative conserved protein found in conjugate transposon TraK
63	 53.48	+1	69459..70535	-	358	188993927	traJ	PGN_0063	-	conserved transmembrane protein found in conjugate transposon TraJ
64	 51.27	0	70538..71167	-	209	188993928	traI	PGN_0064	-	putative conserved protein found in conjugate transposon TraI
65	 53.08	0	71302..73803	-	833	188993929	traG	PGN_0065	-	conserved protein found in conjugate transposon TraG
66	 50.26	0	73800..74177	-	125	188993930	traF	PGN_0066	-	probable conserved transmembrane protein found in conjugate transposon TraF
67	 51.33	0	74182..74481	-	99	188993931	traF	PGN_0067	-	probable conserved transmembrane protein found in conjugate transposon TraE
68	 50.17	0	74657..75244	-	195	188993932	-	PGN_0068	-	hypothetical protein
69	 54.79	+1	75232..75972	-	246	188993933	traA	PGN_0069	-	probable conserved protein found in conjugate transposon TraA
70	 51.78	0	76002..76592	-	196	188993934	-	PGN_0070	-	hypothetical protein
71	 47.74	0	76589..76942	-	117	188993935	-	PGN_0071	-	hypothetical protein
72	 46.06	0	76968..77399	-	143	188993936	-	PGN_0072	-	hypothetical protein
73	 51.60	0	77383..78165	-	260	188993937	traA	PGN_0073	-	putative conserved protein found in conjugate transposon TraA
74	 46.14	0	78954..79367	+	137	188993938	-	PGN_0074	-	hypothetical protein
75	 46.76	0	79352..80587	+	411	188993939	-	PGN_0075	-	hypothetical protein
76	 48.36	0	80770..82779	+	669	188993940	-	PGN_0076	-	putative mobilization protein TraG family
77	 44.87	0	82878..83033	+	51	188993941	-	PGN_0077	-	hypothetical protein
78	 44.60	0	83075..83287	+	70	188993942	-	PGN_0078	-	hypothetical protein
79	 44.51	0	83317..84354	+	345	188993943	-	PGN_0079	-	conserved hypothetical protein with DUF1016 domain
80	 45.87	0	84397..84723	-	108	188993944	-	PGN_0080	-	probable tetracycline resistance element mobilization regulatory protein RteC
81	 43.41	-1	85010..86368	-	452	188993945	-	PGN_0081	-	putative Na driven multidrug efflux pump
82	 44.41	0	86465..87313	-	282	188993946	-	PGN_0082	-	probable transcriptional regulator AraC family
83	 51.97	0	87598..88992	+	464	188993947	-	PGN_0083	-	hypothetical protein
84	 53.76	+1	89027..91156	+	709	188993948	-	PGN_0084	-	DNA topoisomerase I
85	 50.00	0	91296..91727	+	143	188993949	-	PGN_0085	-	hypothetical protein
86	 51.78	0	91714..97200	+	1828	188993950	-	PGN_0086	-	putative DNA methylase
87	 36.58	-2	97257..99167	-	636	188993951	-	PGN_0087	-	hypothetical protein
88	 37.14	-2	99167..99376	-	69	188993952	-	PGN_0088	-	putative transcriptional regulator
89	 45.79	0	99529..99849	-	106	188993953	-	PGN_0089	-	hypothetical protein
90	 44.35	0	99833..100186	-	117	188993954	-	PGN_0090	-	hypothetical protein
91	 48.75	0	100407..100685	+	92	188993955	-	PGN_0091	-	hypothetical protein
92	 47.76	0	100714..101025	+	103	188993956	-	PGN_0092	-	hypothetical protein
93	 43.99	0	101075..101440	-	121	188993957	-	PGN_0093	-	hypothetical protein
94	 46.60	0	101455..102690	-	411	188993958	-	PGN_0094	-	putative bacteriophage integrase
95	 39.33	-1	102733..102882	-	49	188993959	-	PGN_0095	-	hypothetical protein
96	 50.41	0	103084..104424	-	446	188993960	-	PGN_0096	-	aspartate kinase
97	 51.01	0	104442..105182	-	246	188993961	-	PGN_0097	-	putative cell-division ATP-binding protein
98	 41.38	-1	105346..105519	-	57	188993962	-	PGN_0098	-	hypothetical protein
99	 47.44	0	105575..106588	+	337	188993963	-	PGN_0099	-	probable peptidase
100	 51.87	0	106598..107746	+	382	188993964	-	PGN_0100	-	diaminopimelate decarboxylase
48.47	MEAN

4.89	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.