IslandPath Analysis: Streptococcus agalactiae NEM316



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.67   STD DEV: 3.51
Streptococcus agalactiae NEM316, complete genome - 1..2211485
2094 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.10	0	176..1537	+	453	25010076	dnaA	gbs0001	-	chromosomal replication initiation protein
2	 33.60	0	1692..2828	+	378	25010077	dnaN	gbs0002	-	DNA polymerase III subunit beta
3	 31.18	-1	2898..3779	+	293	25010078	-	gbs0003	-	hypothetical protein
4	 33.33	0	3789..3986	+	65	25010079	-	gbs0004	-	hypothetical protein
5	 25.00	-2	4188..4391	+	67	25010080	-	gbs0005	-	hypothetical protein
6	 36.29	0	4551..5666	+	371	25010081	-	gbs0006	-	translation-associated GTPase
7	 30.38	-1	5750..6325	+	191	25010082	-	gbs0007	-	peptidyl-tRNA hydrolase
8	 33.68	0	6322..9819	+	1165	25010083	-	gbs0008	-	transcription-repair coupling factor
9	 35.53	0	10110..10382	+	90	25010084	-	gbs0009	-	S4 domain protein
10	 31.99	-1	10369..10740	+	123	25010085	-	gbs0010	-	hypothetical protein
11	 29.63	-1	10743..10877	+	44	25010086	-	gbs0011	-	hypothetical protein
12	 32.01	-1	10877..12163	+	428	25010087	-	gbs0012	-	hypothetical protein
13	 31.84	-1	12165..13439	+	424	25010088	-	gbs0013	-	hypothetical protein
14	 32.23	0	13444..13986	+	180	25010089	-	gbs0014	-	hypoxanthine-guanine phosphoribosyltransferase
15	 37.89	0	14009..15985	+	658	25010090	ftsH	gbs0015	-	cell division protein FtsH
16	 40.85	+1	28975..30318	+	447	25010091	pcsB	gbs0016	-	PcsB protein
17	 37.87	0	30442..31410	+	322	25010092	-	gbs0017	-	ribose-phosphate pyrophosphokinase
18	 35.03	0	31518..32693	+	391	25010093	-	gbs0018	-	aromatic amino acid aminotransferase
19	 30.31	-1	32683..33444	+	253	25010094	recO	gbs0019	-	DNA repair protein RecO
20	 29.81	-1	33507..34385	+	292	25010095	-	gbs0020	-	hypothetical protein
21	 37.26	0	34463..35455	+	330	25010096	-	gbs0021	-	putative glycerol-3-phosphate acyltransferase PlsX
22	 35.83	0	35466..35705	+	79	25010097	-	gbs0022	-	acyl carrier protein
23	 36.45	0	35829..36533	+	234	25010098	-	gbs0023	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
24	 45.06	+2	36656..40381	+	1241	25010099	-	gbs0024	-	hypothetical protein
25	 38.76	0	40615..42069	+	484	25010100	-	gbs0025	-	amidophosphoribosyltransferase
26	 44.28	+2	42097..43119	+	340	25010101	-	gbs0026	-	phosphoribosylaminoimidazole synthetase
27	 46.81	+2	43287..43835	+	182	25010102	purN	gbs0027	-	phosphoribosylglycinamide formyltransferase
28	 35.59	0	43858..44610	+	250	25010103	-	gbs0028	-	GNAT family acetyltransferase
29	 47.09	+2	44630..46177	+	515	25010104	purH	gbs0029	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
30	 40.89	+1	46370..47269	+	299	25010105	-	gbs0030	-	hypothetical protein
31	 40.77	+1	47416..48720	+	434	25010106	-	gbs0031	-	group B streptococcal surface immunogenic protein
32	 38.63	0	48967..49665	+	232	25010107	-	gbs0032	-	N-acetylmannosamine-6-phosphate 2-epimerase
33	 35.00	0	49712..51028	+	438	25010108	-	gbs0033	-	hypothetical protein
34	 34.35	0	51116..52003	+	295	25010109	-	gbs0034	-	hypothetical protein
35	 35.98	0	52013..52843	+	276	25010110	-	gbs0035	-	hypothetical protein
36	 31.76	-1	52856..53299	+	147	25010111	-	gbs0036	-	hypothetical protein
37	 31.52	-1	53319..53981	+	220	25010112	-	gbs0037	-	hypothetical protein
38	 34.86	0	53978..54895	+	305	25010113	-	gbs0038	-	N-acetylneuraminate lyase, putative
39	 37.98	0	54912..55793	+	293	25010114	-	gbs0039	-	ROK family protein
40	 35.69	0	55801..56778	+	325	25010115	-	gbs0040	-	acetyl xylan esterase, putative
41	 35.32	0	56801..57604	-	267	25010116	-	gbs0041	-	phosphosugar-binding transcriptional regulator, RpiR family
42	 49.41	+2	57888..59150	+	420	25010117	-	gbs0042	-	phosphoribosylamine--glycine ligase
43	 49.80	+2	59431..59922	+	163	25010118	-	gbs0043	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
44	 49.35	+2	59909..60982	+	357	25010119	-	gbs0044	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
45	 31.78	-1	60992..61249	+	85	25010120	-	gbs0045	-	hypothetical protein
46	 35.69	0	61615..62718	+	367	25010121	-	gbs0046	-	hypothetical protein
47	 44.26	+2	62804..64102	+	432	25010122	-	gbs0047	-	adenylosuccinate lyase
48	 28.13	-2	64256..65158	+	300	25010123	-	gbs0048	-	hypothetical protein
49	 37.84	0	65447..66445	+	332	25010124	ruvB	gbs0049	-	Holliday junction DNA helicase B
50	 38.81	0	66597..67034	+	145	25010125	-	gbs0050	-	hypothetical protein
51	 34.65	0	67041..67421	+	126	25010126	-	gbs0051	-	hypothetical protein
52	 34.46	0	67418..69196	+	592	25010127	-	gbs0052	-	hypothetical protein
53	 39.05	0	69465..72107	+	880	25010128	-	gbs0053	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
54	 43.07	+2	72286..73302	+	338	25010129	-	gbs0054	-	alcohol dehydrogenase
55	 35.95	0	73423..74913	+	496	25010130	thrC	gbs0055	-	threonine synthase
56	 35.99	0	75018..76298	+	426	25010131	-	gbs0056	-	MATE efflux family protein
57	 41.10	+1	76504..76812	+	102	25010132	rpsJ	gbs0057	-	30S ribosomal protein S10
58	 42.11	+1	76917..77543	+	208	25010133	rplC	gbs0058	-	50S ribosomal protein L3
59	 42.79	+2	77567..78190	+	207	25010134	rplD	gbs0059	-	50S ribosomal protein L4
60	 36.70	0	78190..78486	+	98	25010135	rplW	gbs0060	-	50S ribosomal protein L23
61	 40.77	+1	78504..79337	+	277	25010136	rplB	gbs0061	-	50S ribosomal protein L2
62	 39.78	+1	79436..79714	+	92	25010137	rpsS	gbs0062	-	30S ribosomal protein S19
63	 39.71	+1	79730..80074	+	114	25010138	rplV	gbs0063	-	50S ribosomal protein L22
64	 40.52	+1	80087..80740	+	217	25010139	rpsC	gbs0064	-	30S ribosomal protein S3
65	 42.75	+2	80744..81157	+	137	25010140	rplP	gbs0065	-	50S ribosomal protein L16
66	 34.78	0	81167..81373	+	68	25010141	rpmC	gbs0066	-	50S ribosomal protein L29
67	 37.93	0	81399..81659	+	86	25010142	rpsQ	gbs0067	-	30S ribosomal protein S17
68	 44.17	+2	81684..82052	+	122	25010143	rplN	gbs0068	-	50S ribosomal protein L14
69	 38.89	0	82132..82437	+	101	25010144	rplX	gbs0069	-	50S ribosomal protein L24
70	 38.86	0	82461..83003	+	180	25010145	rplE	gbs0070	-	50S ribosomal protein L5
71	 43.55	+2	83021..83206	+	61	25010146	rpsN	gbs0071	-	30S ribosomal protein S14
72	 35.34	0	83361..83759	+	132	25010147	rpsH	gbs0072	-	30S ribosomal protein S8
73	 39.11	0	83869..84405	+	178	25010148	rplF	gbs0073	-	50S ribosomal protein L6
74	 44.54	+2	84506..84862	+	118	25010149	rplR	gbs0074	-	50S ribosomal protein L18
75	 43.64	+2	84881..85375	+	164	25010150	rpsE	gbs0075	-	30S ribosomal protein S5
76	 37.78	0	85390..85569	+	59	25010151	rpmD	gbs0076	-	50S ribosomal protein L30
77	 41.27	+1	85694..86134	+	146	25010152	rplO	gbs0077	-	50S ribosomal protein L15
78	 34.87	0	86155..87459	+	434	25010153	secY	gbs0078	-	preprotein translocase subunit SecY
79	 38.34	0	87554..88192	+	212	25010154	adk	gbs0079	-	adenylate kinase
80	 37.90	0	88308..88526	+	72	25010155	infA	gbs0080	-	translation initiation factor IF-1
81	 37.61	0	88552..88668	+	38	25010156	rpmJ	gbs0081	-	50S ribosomal protein L36
82	 40.16	+1	88686..89051	+	121	25010157	rpsM	gbs0082	-	30S ribosomal protein S13
83	 44.01	+2	89069..89452	+	127	25010158	rpsK	gbs0083	-	30S ribosomal protein S11
84	 37.06	0	89502..90440	+	312	25010159	rpoA	gbs0084	-	DNA-directed RNA polymerase subunit alpha
85	 39.79	+1	90455..90841	+	128	25010160	rplQ	gbs0085	-	50S ribosomal protein L17
86	 28.04	-2	97797..97985	+	62	25010161	-	gbs0086	-	hypothetical protein
87	 36.45	0	98319..98639	+	106	25010162	-	gbs0087	-	hypothetical protein
88	 30.43	-1	99429..99980	+	183	25010163	-	gbs0088	-	hypothetical protein
89	 28.57	-2	100200..100619	+	139	25010164	-	gbs0089	-	hypothetical protein
90	 30.00	-1	100819..101298	+	159	25010165	-	gbs0090	-	hypothetical protein
91	 39.25	+1	101420..102112	+	230	25010166	-	gbs0091	-	phosphoglycerate mutase family protein
92	 35.86	0	102109..102861	+	250	25010167	-	gbs0092	-	hypothetical protein
93	 31.94	-1	102858..103433	+	191	25010168	-	gbs0093	-	hypothetical protein
94	 37.68	0	103576..104610	+	344	25010169	hrcA	gbs0094	-	heat-inducible transcription repressor
95	 40.84	+1	104613..105185	+	190	25010170	-	gbs0095	-	hypothetical protein
96	 39.78	+1	105366..107195	+	609	25010171	dnaK	gbs0096	-	molecular chaperone DnaK
97	 41.49	+1	107484..108623	+	379	25010172	dnaJ	gbs0097	-	chaperone protein DnaJ
98	 34.21	0	108741..109988	+	415	25010173	-	gbs0098	-	GntR family transcriptional regulator
99	 36.29	0	110059..110835	+	258	25010174	truA	gbs0099	-	tRNA pseudouridine synthase A
100	 36.63	0	110798..111556	+	252	25010175	-	gbs0100	-	phosphomethylpyrimidine kinase
35.67	MEAN

3.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.