IslandPath Analysis: Desulfitobacterium hafniense Y51



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.73   STD DEV: 4.89
Desulfitobacterium hafniense Y51, complete genome - 1..5727534
5060 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 46.44	0	1..1350	+	449	89892747	dnaA	DSY0001	-	ATPase involved in DNA replication initiation
2	 43.44	0	1552..2709	+	385	89892748	dnaN	DSY0002	-	DNA polymerase III beta chain
3	 44.17	0	2724..3821	+	365	89892749	recF	DSY0003	-	DNA replication and repair protein recF
4	 34.50	-2	3825..4082	+	85	89892750	-	DSY0004	-	hypothetical protein
5	 47.96	0	4234..6168	+	644	89892751	gyrB	DSY0005	-	DNA gyrase subunit B
6	 47.04	0	6182..8668	+	828	89892752	gyrA	DSY0006	-	DNA gyrase subunit A
7	 46.03	0	8783..9349	+	188	89892753	-	DSY0007	-	hypothetical protein
8	 47.95	0	9380..10645	+	421	89892754	serS	DSY0008	-	seryl-tRNA synthetase
9	 50.11	0	11126..11572	+	148	89892755	-	DSY0009	-	hypothetical protein
10	 47.81	0	12071..13258	-	395	89892756	-	DSY0010	-	hypothetical protein
11	 53.93	+1	13699..14067	-	122	89892757	-	DSY0011	-	hypothetical protein
12	 53.88	+1	14335..14592	+	85	89892758	-	DSY0012	-	hypothetical protein
13	 45.83	0	14748..15323	+	191	89892759	-	DSY0013	-	hypothetical protein
14	 45.33	0	15662..16903	-	413	89892760	-	DSY0014	-	hypothetical protein
15	 37.35	-2	17246..17743	-	165	89892761	-	DSY0015	-	hypothetical protein
16	 41.65	-1	17743..19485	-	580	89892762	-	DSY0016	-	hypothetical protein
17	 41.92	-1	19630..20211	-	193	89892763	-	DSY0017	-	hypothetical protein
18	 44.13	0	20287..21129	-	280	89892764	-	DSY0018	-	hypothetical protein
19	 43.81	0	21457..21771	-	104	89892765	-	DSY0019	-	hypothetical protein
20	 45.88	0	21818..22399	-	193	89892766	-	DSY0020	-	hypothetical protein
21	 43.64	0	22459..22914	-	151	89892767	-	DSY0021	-	hypothetical protein
22	 45.70	0	22984..23565	-	193	89892768	-	DSY0022	-	hypothetical protein
23	 43.48	0	23631..24596	-	321	89892769	-	DSY0023	-	hypothetical protein
24	 45.36	0	24659..25207	-	182	89892770	-	DSY0024	-	hypothetical protein
25	 43.75	0	25255..25878	-	207	89892771	-	DSY0025	-	hypothetical protein
26	 42.05	-1	25881..26465	-	194	89892772	-	DSY0026	-	hypothetical protein
27	 53.11	+1	27044..27316	-	90	89892773	-	DSY0027	-	hypothetical protein
28	 53.29	+1	27325..29148	-	607	89892774	-	DSY0028	-	hypothetical protein
29	 53.66	+1	29216..30622	-	468	89892775	-	DSY0029	-	hypothetical protein
30	 52.33	0	30781..33660	-	959	89892776	-	DSY0030	-	hypothetical protein
31	 52.61	0	33660..34292	-	210	89892777	-	DSY0031	-	hypothetical protein
32	 53.43	+1	34384..35025	+	213	89892778	-	DSY0032	-	hypothetical protein
33	 52.98	+1	35159..35494	-	111	89892779	-	DSY0033	-	hypothetical protein
34	 58.32	+2	35549..37057	-	502	89892780	-	DSY0034	-	hypothetical protein
35	 54.17	+1	37062..37565	-	167	89892781	-	DSY0035	-	hypothetical protein
36	 56.55	+1	37578..38615	-	345	89892782	-	DSY0036	-	hypothetical protein
37	 55.21	+1	38628..39107	-	159	89892783	-	DSY0037	-	hypothetical protein
38	 53.43	+1	39128..41008	-	626	89892784	-	DSY0038	-	hypothetical protein
39	 39.39	-1	41100..41594	+	164	89892785	-	DSY0039	-	hypothetical protein
40	 47.22	0	41679..41786	+	35	89892786	-	DSY0040	-	hypothetical protein
41	 44.18	0	41802..42299	+	165	89892787	-	DSY0041	-	hypothetical protein
42	 50.08	0	42350..42952	-	200	89892788	-	DSY0042	-	hypothetical protein
43	 53.10	+1	42940..43197	-	85	89892789	-	DSY0043	-	hypothetical protein
44	 57.62	+2	43201..45366	-	721	89892790	-	DSY0044	-	hypothetical protein
45	 54.93	+1	45771..46724	-	317	89892791	-	DSY0045	-	hypothetical protein
46	 42.50	-1	47293..48165	+	290	89892792	-	DSY0046	-	hypothetical protein
47	 39.50	-1	48443..49285	+	280	89892793	-	DSY0047	-	hypothetical protein
48	 40.34	-1	49289..49759	+	156	89892794	-	DSY0048	-	hypothetical protein
49	 38.17	-1	49756..50541	+	261	89892795	-	DSY0049	-	hypothetical protein
50	 45.81	0	51538..53325	-	595	89892796	-	DSY0050	-	hypothetical protein
51	 51.57	0	54255..54572	-	105	89892797	-	DSY0051	-	hypothetical protein
52	 52.15	0	54739..56364	-	541	89892798	-	DSY0052	-	hypothetical protein
53	 54.95	+1	56495..57049	-	184	89892799	-	DSY0053	-	hypothetical protein
54	 55.37	+1	57160..57708	-	182	89892800	-	DSY0054	-	hypothetical protein
55	 53.81	+1	58094..58801	-	235	89892801	-	DSY0055	-	hypothetical protein
56	 55.38	+1	58767..59537	-	256	89892802	-	DSY0056	-	hypothetical protein
57	 52.37	0	59650..60579	-	309	89892803	-	DSY0057	-	hypothetical protein
58	 52.61	0	60576..62183	-	535	89892804	-	DSY0058	-	hypothetical protein
59	 56.41	+1	62177..62644	-	155	89892805	-	DSY0059	-	hypothetical protein
60	 54.67	+1	62992..63816	-	274	89892806	-	DSY0060	-	hypothetical protein
61	 54.08	+1	63977..64429	-	150	89892807	-	DSY0061	-	hypothetical protein
62	 55.28	+1	64662..68657	-	1331	89892808	-	DSY0062	-	hypothetical protein
63	 56.39	+1	68668..69027	-	119	89892809	-	DSY0063	-	hypothetical protein
64	 49.65	0	69381..69950	-	189	89892810	-	DSY0064	-	hypothetical protein
65	 55.38	+1	69977..70357	-	126	89892811	-	DSY0065	-	hypothetical protein
66	 51.15	0	70565..71563	-	332	89892812	-	DSY0066	-	hypothetical protein
67	 51.87	0	71560..72390	-	276	89892813	-	DSY0067	-	hypothetical protein
68	 54.46	+1	72399..72734	-	111	89892814	-	DSY0068	-	hypothetical protein
69	 49.24	0	72935..74191	-	418	89892815	-	DSY0069	-	hypothetical protein
70	 53.22	+1	74184..74912	-	242	89892816	-	DSY0070	-	hypothetical protein
71	 39.48	-1	75494..76615	+	373	89892817	-	DSY0071	-	hypothetical protein
72	 43.33	0	76679..77248	-	189	89892818	-	DSY0072	-	hypothetical protein
73	 45.30	0	78083..79327	-	414	89892819	-	DSY0073	-	hypothetical protein
74	 40.82	-1	79713..79979	+	88	89892820	-	DSY0074	-	hypothetical protein
75	 42.40	-1	79976..80383	+	135	89892821	-	DSY0075	-	hypothetical protein
76	 41.26	-1	80371..81228	-	285	89892822	-	DSY0076	-	hypothetical protein
77	 42.86	0	81434..82000	+	188	89892823	-	DSY0077	-	hypothetical protein
78	 51.46	0	82587..82928	+	113	89892824	-	DSY0078	-	hypothetical protein
79	 44.98	0	83293..83541	+	82	89892825	-	DSY0079	-	hypothetical protein
80	 41.76	-1	84171..84443	-	90	89892826	-	DSY0080	-	hypothetical protein
81	 46.86	0	84445..85908	-	487	89892827	-	DSY0081	-	hypothetical protein
82	 42.51	-1	86162..86368	+	68	89892828	-	DSY0082	-	hypothetical protein
83	 49.48	0	86870..88207	+	445	89892829	-	DSY0083	-	hypothetical protein
84	 38.77	-1	88300..88704	+	134	89892830	-	DSY0084	-	hypothetical protein
85	 40.57	-1	88924..89379	+	151	89892831	-	DSY0085	-	hypothetical protein
86	 48.28	0	89404..89811	+	135	89892832	-	DSY0086	-	hypothetical protein
87	 48.74	0	90212..91717	+	501	89892833	-	DSY0087	-	hypothetical protein
88	 48.63	0	91876..92895	+	339	89892834	-	DSY0088	-	hypothetical protein
89	 46.12	0	92892..93689	+	265	89892835	-	DSY0089	-	hypothetical protein
90	 45.59	0	93745..94560	-	271	89892836	-	DSY0090	-	hypothetical protein
91	 46.03	0	94733..95236	-	167	89892837	-	DSY0091	-	hypothetical protein
92	 52.34	0	95381..96322	+	313	89892838	-	DSY0092	-	hypothetical protein
93	 57.01	+1	96338..97093	+	251	89892839	-	DSY0093	-	hypothetical protein
94	 53.25	+1	97095..98018	+	307	89892840	-	DSY0094	-	hypothetical protein
95	 52.36	0	98002..99105	+	367	89892841	-	DSY0095	-	hypothetical protein
96	 49.66	0	99386..101008	+	540	89892842	-	DSY0096	-	hypothetical protein
97	 47.85	0	101128..102105	+	325	89892843	-	DSY0097	-	hypothetical protein
98	 49.66	0	102099..102968	+	289	89892844	-	DSY0098	-	hypothetical protein
99	 51.08	0	103005..103793	+	262	89892845	-	DSY0099	-	hypothetical protein
100	 50.40	0	103781..104401	+	206	89892846	-	DSY0100	-	hypothetical protein
47.73	MEAN

4.89	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.