IslandPath Analysis: Mycobacterium bovis BCG str. Pasteur 1173P2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.45   STD DEV: 3.42
Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome - 1..4374522
3952 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.99	-1	1..1524	+	507	121635884	dnaA	BCG_0001	-	chromosomal replication initiation protein
2	 60.13	-1	2052..3260	+	402	121635885	dnaN_1	BCG_0002	-	DNA polymerase III subunit beta
3	 60.10	-1	3280..4437	+	385	121635886	recF	BCG_0003	-	recombination protein F
4	 66.13	0	4434..4997	+	187	121635887	-	BCG_0004	-	hypothetical protein
5	 60.14	-1	5123..7267	+	714	121635888	gyrB	BCG_0005	-	DNA gyrase subunit B
6	 63.77	0	7302..9818	+	838	121635889	gyrA_1	BCG_0006	-	DNA gyrase subunit A
7	 68.20	0	9914..10828	+	304	121635890	-	BCG_0007	-	hypothetical protein
8	 71.00	+1	11874..12311	-	145	121635891	-	BCG_0008c	-	hypothetical protein
9	 62.48	0	12468..13016	+	182	121635892	ppiA_1	BCG_0009	-	putative iron-regulated peptidyl-prolyl cis-trans isomerase A ppiA
10	 61.90	-1	13222..13557	-	111	121635893	-	BCG_0010c	-	hypothetical protein
11	 56.38	-2	13713..13994	-	93	121635894	-	BCG_0011c	-	putative septation inhibitor protein
12	 65.02	0	14088..14876	+	262	121635895	-	BCG_0012	-	hypothetical protein
13	 63.95	0	14913..15611	+	232	121635896	trpG_1	BCG_0013	-	para-aminobenzoate synthase component II
14	 70.56	+1	18322..18912	+	196	121635897	sigMa_2	BCG_0016	-	RNA polymerase sigma factor SigM
15	 69.93	+1	19005..19769	+	254	121635898	-	BCG_0018	-	hypothetical protein
16	 66.17	0	19863..20870	+	335	121635899	trxB2_2	BCG_0019	-	putative thioredoxin reductase trxB2 (TRXR)
17	 58.97	-1	20867..21217	+	116	121635900	trxC_2	BCG_0020	-	thioredoxin trxC (TRX) (MPT46)
18	 62.82	0	21327..22547	+	406	121635901	-	BCG_0021	-	putative hydrolase
19	 63.67	0	22568..23302	-	244	121635902	-	BCG_0022c	-	hypothetical protein
20	 64.06	0	23592..24626	-	344	121635903	parB_2	BCG_0023c	-	putative chromosome partitioning protein parB
21	 62.55	0	24623..25666	-	347	121635904	parA_2	BCG_0024c	-	putative chromosome partitioning protein parA
22	 66.22	0	25663..26337	-	224	121635905	gidB	BCG_0025c	-	glucose-inhibited division protein B
23	 64.01	0	26469..27032	-	187	121635906	-	BCG_0026c	-	hypothetical protein
24	 59.95	-1	27104..28204	-	366	121635907	-	BCG_0027c	-	putative inner membrane protein translocase component YidC
25	 60.06	-1	28188..28550	-	120	121635908	-	BCG_0028c	-	hypothetical protein
26	 62.96	0	28547..28924	-	125	121635909	rnpA	BCG_0029c	-	ribonuclease P
27	 63.89	0	28921..29064	-	47	121635910	rpmH	BCG_0030c	-	50S ribosomal protein L34
28	 58.99	-1	29668..31191	+	507	121635911	dnaA	BCG_0031	-	chromosomal replication initiation protein
29	 60.13	-1	31719..32927	+	402	121635912	dnaN_2	BCG_0032	-	DNA polymerase III subunit beta
30	 60.10	-1	32947..34104	+	385	121635913	recF	BCG_0033	-	recombination protein F
31	 66.13	0	34101..34664	+	187	121635914	-	BCG_0034	-	hypothetical protein
32	 60.14	-1	34790..36934	+	714	121635915	gyrB	BCG_0035	-	DNA gyrase subunit B
33	 63.77	0	36969..39485	+	838	121635916	gyrA_2	BCG_0036	-	DNA gyrase subunit A
34	 68.20	0	39581..40495	+	304	121635917	-	BCG_0037	-	hypothetical protein
35	 71.00	+1	41541..41978	-	145	121635918	-	BCG_0038c	-	hypothetical protein
36	 62.48	0	42135..42683	+	182	121635919	ppiA_2	BCG_0039	-	putative iron-regulated peptidyl-prolyl cis-trans isomerase a ppiA
37	 61.90	-1	42889..43224	-	111	121635920	-	BCG_0040c	-	hypothetical protein
38	 56.38	-2	43380..43661	-	93	121635921	-	BCG_0041c	-	putative septation inhibitor protein
39	 65.02	0	43755..44543	+	262	121635922	-	BCG_0042	-	hypothetical protein
40	 63.95	0	44580..45278	+	232	121635923	trpG_2	BCG_0043	-	para-aminobenzoate synthase component II
41	 63.26	0	45256..47136	-	626	121635924	pknB	BCG_0044c	-	transmembrane serine/threonine-protein kinase B pknB
42	 67.67	0	47133..48428	-	431	121635925	pknA	BCG_0045c	-	transmembrane serine/threonine-protein kinase A pknA
43	 64.50	0	48425..49900	-	491	121635926	pbpA	BCG_0046c	-	putative penicillin-binding protein pbpA
44	 62.13	0	49897..51306	-	469	121635927	rodA	BCG_0047c	-	putative cell division protein rodA
45	 67.57	0	51303..52847	-	514	121635928	pstP	BCG_0048c	-	Serine/threonine phosphatase PPP
46	 62.82	0	52936..53403	-	155	121635929	-	BCG_0049c	-	hypothetical protein
47	 66.41	0	53527..55092	-	521	121635930	TB39.8	BCG_0050c	-	hypothetical protein
48	 66.05	0	55561..56529	-	322	121635931	-	BCG_0051c	-	hypothetical protein
49	 68.33	0	56671..57090	-	139	121635932	whiB5	BCG_0052c	-	putative transcriptional regulatory protein whiB-like whiB5
50	 67.19	0	57243..58013	+	256	121635933	-	BCG_0053	-	putative transcriptional regulatory protein
51	 69.30	+1	58010..58843	+	277	121635934	-	BCG_0054	-	putative secreted protein P60-related protein
52	 65.01	0	58892..59254	+	120	121635935	-	BCG_0056	-	hypothetical protein
53	 65.48	0	59369..60802	+	477	121635936	-	BCG_0057	-	hypothetical protein
54	 62.89	0	60840..61157	+	105	121635937	-	BCG_0058	-	hypothetical protein
55	 63.73	0	61165..61470	+	101	121635938	-	BCG_0059	-	hypothetical protein
56	 66.03	0	61708..62805	+	365	121635939	-	BCG_0060	-	hypothetical protein
57	 65.45	0	62875..63204	+	109	121635940	-	BCG_0061	-	hypothetical protein
58	 66.67	0	63233..63445	+	70	121635941	-	BCG_0062	-	putative remnant of a transposase
59	 62.09	0	63946..66261	+	771	121635942	bioF2	BCG_0063	-	putative 8-amino-7-oxononanoate synthase bioF2
60	 57.20	-2	66258..66521	+	87	121635943	acpA	BCG_0064	-	putative acyl carrier protein acpA (ACP)
61	 65.66	0	66518..66913	+	131	121635944	-	BCG_0065	-	hypothetical protein
62	 63.59	0	66910..68598	+	562	121635945	fadD34	BCG_0066	-	putative fatty-acid-coa ligase fadD34 (fatty-acid-COA synthetase) (fatty-acid-COA synthase)
63	 69.02	+1	68799..69479	-	226	121635946	-	BCG_0067c	-	hypothetical protein
64	 67.72	0	69527..70852	-	441	121635947	-	BCG_0068c	-	putative integral membrane protein
65	 65.35	0	70954..71562	+	202	121635948	-	BCG_0069	-	hypothetical protein
66	 71.55	+1	71654..72001	-	115	121635949	-	BCG_0070c	-	putative transmembrane protein
67	 67.52	0	72083..73015	-	310	121635950	mtc28	BCG_0071c	-	secreted proline rich protein MTC28 (proline rich 28 kDa antigen)
68	 62.96	0	73212..76121	+	969	121635951	leuS	BCG_0072	-	leucyl-tRNA synthetase
69	 63.80	0	76231..76857	-	208	121635952	-	BCG_0073c	-	putative transcriptional regulatory protein (marR-family)
70	 63.67	0	77016..77750	-	244	121635953	-	BCG_0074c	-	gntR family transcriptional regulator
71	 66.54	0	77883..78677	-	264	121635954	-	BCG_0075c	-	putative oxidoreductase
72	 67.11	0	78693..79589	-	298	121635955	-	BCG_0076c	-	putative hydrolase
73	 64.13	0	79671..80774	-	367	121635956	ino1	BCG_0077c	-	myo-inositol-1-phosphate synthase INO1
74	 66.48	0	80835..81377	-	180	121635957	-	BCG_0078c	-	hypothetical protein
75	 65.86	0	81478..82347	-	289	121635958	-	BCG_0079c	-	hypothetical protein
76	 66.67	0	82481..82894	+	137	121635959	-	BCG_0080	-	hypothetical protein
77	 63.39	0	83313..85358	+	681	121635960	ponA1	BCG_0081	-	putative bifunctional penicillin-binding protein 1A/1B PONA1
78	 64.53	0	85355..87037	+	560	121635961	-	BCG_0082	-	putative transmembrane protein
79	 65.96	0	87069..87632	+	187	121635962	-	BCG_0083	-	hypothetical protein
80	 60.14	-1	87851..88141	+	96	121635963	rpsF	BCG_0084	-	30S ribosomal protein S6
81	 66.67	0	88245..88739	+	164	121635964	ssb	BCG_0085	-	single-strand DNA-binding protein
82	 64.71	0	88781..89035	+	84	121635965	rpsR	BCG_0086	-	30S ribosomal protein S18
83	 62.09	0	89068..89526	+	152	121635966	rplI	BCG_0087	-	50S ribosomal protein L9
84	 60.73	-1	89555..90076	+	173	121635967	-	BCG_0088	-	hypothetical protein
85	 62.90	0	90055..92679	+	874	121635968	dnaB	BCG_0089	-	replicative DNA helicase
86	 61.90	-1	92859..93551	+	230	121635969	-	BCG_0090	-	hypothetical protein
87	 60.06	-1	93568..94626	+	352	121635970	-	BCG_0091	-	hypothetical protein
88	 61.74	-1	94650..95075	+	141	121635971	-	BCG_0092	-	hypothetical protein
89	 68.33	0	95211..96353	+	380	121635972	celA1	BCG_0093	-	putative cellulase celA1 (endoglucanase)
90	 67.22	0	96582..98021	+	479	121635973	-	BCG_0094	-	putative oxidoreductase
91	 63.61	0	98279..101218	+	979	121635974	-	BCG_0095	-	hypothetical protein
92	 63.75	0	101285..101524	+	79	121635975	-	BCG_0095A	-	antitoxin
93	 62.44	0	101517..101918	+	133	121635976	-	BCG_0096	-	hypothetical protein
94	 61.75	-1	101970..104207	-	745	121635977	icd2	BCG_0097c	-	putative isocitrate dehydrogenase
95	 65.09	0	104325..104894	-	189	121635978	-	BCG_0098c	-	TetR family transcriptional regulator
96	 65.79	0	104997..105908	+	303	121635979	-	BCG_0099	-	short chain dehydrogenase
97	 65.08	0	105933..107318	-	461	121635980	sdaA	BCG_0100c	-	putative l-serine dehydratase sdaA
98	 66.20	0	107315..108592	-	425	121635981	glyA2	BCG_0101c	-	serine hydroxymethyltransferase
99	 65.34	0	109182..109934	+	250	121635982	-	BCG_0102	-	putative maturase
100	 61.71	-1	110365..111414	+	349	121635983	-	BCG_0103	-	putative glutamine-transport transmembrane protein ABC transporter
65.45	MEAN

3.42	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.