IslandPath Analysis: Ralstonia eutropha JMP134



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.27   STD DEV: 3.11
Ralstonia eutropha JMP134 chromosome 2, complete sequence - 1..2726152
2407 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.88	0	127..2562	+	811	73537299	-	Reut_B3464	-	aconitate hydratase
2	 59.30	-1	3139..4020	+	293	73537300	-	Reut_B3465	-	hypothetical protein
3	 58.97	-2	4017..4289	-	90	73537301	-	Reut_B3466	-	XRE family transcriptional regulator
4	 64.23	0	4523..6124	-	533	73537302	-	Reut_B3467	-	FAD dependent oxidoreductase
5	 62.10	-1	6222..6746	-	174	73537303	-	Reut_B3468	-	flavin reductase-like, FMN-binding
6	 61.94	-1	6820..8109	-	429	73537304	-	Reut_B3469	-	putative oxygenase subunit protein
7	 63.37	0	8190..8978	-	262	73537305	-	Reut_B3470	-	short chain dehydrogenase
8	 62.33	0	9260..10366	-	368	73537306	-	Reut_B3471	-	AraC family transcriptional regulator
9	 64.55	0	10512..11171	-	219	73537307	-	Reut_B3472	-	bacteriocin/lantibiotic ABC transporter
10	 60.17	-1	11550..12395	+	281	73537308	-	Reut_B3473	-	glycosyl transferase family protein
11	 66.67	0	12491..12682	-	63	73537309	-	Reut_B3474	-	hypothetical protein
12	 63.85	0	12917..13342	-	141	73537310	-	Reut_B3475	-	molybdenum-pterin binding protein
13	 69.52	+1	13551..14321	+	256	73537311	-	Reut_B3476	-	helix-turn-helix, AraC type
14	 68.52	+1	14340..14825	-	161	73537312	-	Reut_B3477	-	endoribonuclease L-PSP
15	 67.13	0	14822..15691	-	289	73537313	-	Reut_B3478	-	phenazine biosynthesis PhzC/PhzF protein
16	 65.96	0	15684..16676	-	330	73537314	-	Reut_B3479	-	hypothetical protein
17	 68.82	+1	16819..17283	+	154	73537315	-	Reut_B3480	-	cytochrome c, class I
18	 63.90	0	17320..18258	-	312	73537316	-	Reut_B3481	-	hypothetical protein
19	 67.04	0	18591..21032	-	813	73537317	-	Reut_B3482	-	MscS mechanosensitive ion channel
20	 73.11	+2	21509..21865	+	118	73537318	-	Reut_B3483	-	hypothetical protein
21	 66.46	0	21862..22845	-	327	73537319	-	Reut_B3484	-	twin-arginine translocation pathway signal:ABC transporter, substrate-binding protein, aliphatic sulphonates
22	 63.39	0	22962..23450	-	162	73537320	-	Reut_B3485	-	hypothetical protein
23	 65.86	0	23745..24488	-	247	73537321	-	Reut_B3486	-	short chain dehydrogenase
24	 68.72	+1	24604..25527	+	307	73537322	-	Reut_B3487	-	regulatory protein, LysR:LysR, substrate-binding
25	 63.70	0	25669..26106	+	145	73537323	-	Reut_B3488	-	DGPFAETKE
26	 64.20	0	26223..26951	+	242	73537324	-	Reut_B3489	-	hypothetical protein
27	 66.87	0	27010..27501	+	163	73537325	-	Reut_B3490	-	NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase
28	 66.82	0	27553..28206	+	217	73537326	-	Reut_B3491	-	glutathione S-transferase
29	 65.09	0	28231..29184	-	317	73537327	-	Reut_B3492	-	prolyl aminopeptidase
30	 62.18	0	29819..30553	+	244	73537328	-	Reut_B3493	-	glutathione S-transferase
31	 64.73	0	30692..32032	+	446	73537329	-	Reut_B3494	-	L-sorbosone dehydrogenase
32	 67.87	0	32211..33038	+	275	73537330	-	Reut_B3495	-	UbiE/COQ5 methyltransferase
33	 65.63	0	33287..34636	+	449	73537331	-	Reut_B3496	-	hypothetical protein
34	 68.60	+1	34868..35230	+	120	73537332	-	Reut_B3497	-	hypothetical protein
35	 63.32	0	35323..36189	+	288	73537333	-	Reut_B3498	-	regulatory protein, LysR:LysR, substrate-binding
36	 70.00	+1	36205..36444	-	79	73537334	-	Reut_B3499	-	hypothetical protein
37	 63.90	0	36808..37965	+	385	73537335	-	Reut_B3500	-	Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal
38	 67.55	0	38172..39641	+	489	73537336	-	Reut_B3501	-	Outer membrane efflux protein
39	 67.99	0	39625..40833	+	402	73537337	-	Reut_B3502	-	secretion protein HlyD
40	 62.69	0	40847..43966	+	1039	73537338	-	Reut_B3503	-	heavy metal efflux pump CzcA
41	 61.66	-1	44193..44771	+	192	73537339	-	Reut_B3504	-	hypothetical protein
42	 61.05	-1	44786..45052	+	88	73537340	-	Reut_B3505	-	CsbD-like
43	 64.65	0	45178..46668	+	496	73537341	-	Reut_B3506	-	ATP-binding region, ATPase-like
44	 59.24	-1	46749..47246	-	165	73537342	-	Reut_B3507	-	hypothetical protein
45	 62.08	-1	47478..49091	-	537	73537343	-	Reut_B3508	-	PMT family 4-amino-4-deoxy-L-arabinose transferase/ glycosyltransferase
46	 66.67	0	49418..50248	+	276	73537344	-	Reut_B3509	-	GntR family transcriptional regulator
47	 68.86	+1	50232..51827	+	531	73537345	-	Reut_B3510	-	hypothetical protein
48	 65.91	0	51974..52369	+	131	73537346	-	Reut_B3511	-	hypothetical protein
49	 66.41	0	52375..53547	+	390	73537347	-	Reut_B3512	-	thiolase
50	 65.77	0	53645..54646	-	333	73537348	-	Reut_B3513	-	hypothetical protein
51	 66.86	0	54676..56253	-	525	73537349	-	Reut_B3514	-	acyl-CoA synthetase
52	 64.87	0	56274..57554	-	426	73537350	-	Reut_B3515	-	Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region
53	 66.67	0	57555..57935	-	126	73537351	-	Reut_B3516	-	hypothetical protein
54	 69.65	+1	57935..58939	-	334	73537352	-	Reut_B3517	-	aminoglycoside phosphotransferase
55	 66.05	0	59111..59758	+	215	73537353	-	Reut_B3518	-	regulatory protein, TetR
56	 69.95	+1	59755..59967	-	70	73537354	-	Reut_B3519	-	hypothetical protein
57	 64.50	0	59967..61535	-	522	73537355	-	Reut_B3520	-	hypothetical protein
58	 66.28	0	61566..64133	-	855	73537356	-	Reut_B3521	-	cellulose synthase (UDP-forming)
59	 71.21	+1	64130..64921	-	263	73537357	-	Reut_B3522	-	hypothetical protein
60	 70.59	+1	64918..65121	-	67	73537358	-	Reut_B3523	-	hypothetical protein
61	 68.76	+1	65128..66843	-	571	73537359	-	Reut_B3524	-	hypothetical protein
62	 68.27	0	66852..70649	-	1265	73537360	-	Reut_B3525	-	TPR repeat-containing cellulose synthase operon C
63	 68.62	+1	70634..71812	-	392	73537361	-	Reut_B3526	-	endo-1,4-D-glucanase
64	 66.88	0	71814..74159	-	781	161611273	-	Reut_B3527	-	cellulose synthase regulator protein
65	 60.99	-1	74709..74990	+	93	73537363	-	Reut_B3528	-	D-galactarate dehydratase/Altronate hydrolase, N-terminal
66	 64.63	0	75051..76226	+	391	73537364	-	Reut_B3529	-	Altronate dehydratase
67	 69.12	+1	76223..77161	+	312	73537365	-	Reut_B3530	-	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
68	 69.32	+1	77158..78174	+	338	73537366	-	Reut_B3531	-	(R)-2-hydroxyacid dehydrogenase
69	 65.20	0	78250..79275	+	341	73537367	-	Reut_B3532	-	hypothetical protein
70	 64.37	0	79413..80153	+	246	73537368	-	Reut_B3533	-	GntR family transcriptional regulator
71	 67.90	0	80293..81426	-	377	73537369	-	Reut_B3534	-	Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal
72	 64.32	0	81440..82633	-	397	73537370	-	Reut_B3535	-	Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region
73	 65.98	0	82846..84438	+	530	73537371	-	Reut_B3536	-	AMP-dependent synthetase and ligase
74	 62.85	0	84531..85499	+	322	73537372	-	Reut_B3537	-	hypothetical protein
75	 67.48	0	86097..86960	-	287	73537373	-	Reut_B3538	-	hypothetical protein
76	 67.98	0	86978..87817	-	279	73537374	-	Reut_B3539	-	HpcH/HpaI aldolase
77	 68.34	0	87828..89201	-	457	73537375	-	Reut_B3540	-	MmgE/PrpD
78	 66.50	0	89265..90464	-	399	73537376	-	Reut_B3541	-	L-carnitine dehydratase/bile acid-inducible protein F
79	 63.33	0	90473..91642	-	389	73537377	-	Reut_B3542	-	Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal
80	 64.81	0	92577..93062	+	161	73537378	-	Reut_B3543	-	hypothetical protein
81	 64.45	0	93099..94001	-	300	73537379	-	Reut_B3544	-	LysR family transcriptional regulator
82	 64.70	0	94195..95109	+	304	73537380	-	Reut_B3545	-	Short-chain dehydrogenase/reductase SDR
83	 67.64	0	95111..96346	+	411	73537381	-	Reut_B3546	-	L-carnitine dehydratase/bile acid-inducible protein F
84	 69.19	+1	96434..97582	-	382	73537382	-	Reut_B3547	-	AraC family transcriptional regulator
85	 64.88	0	97923..98927	+	334	73537383	-	Reut_B3548	-	hypothetical protein
86	 67.71	0	98941..100668	+	575	73537384	-	Reut_B3549	-	acyl-CoA synthetase
87	 65.85	0	100707..101687	+	326	73537385	-	Reut_B3550	-	hypothetical protein
88	 64.74	0	101731..102510	+	259	73537386	-	Reut_B3551	-	short chain enoyl-CoA hydratase
89	 62.05	-1	102676..103866	+	396	73537387	-	Reut_B3552	-	Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal
90	 58.50	-2	104270..106192	+	640	73537388	-	Reut_B3553	-	putative serine protein kinase, PrkA
91	 61.44	-1	106230..107492	+	420	73537389	-	Reut_B3554	-	hypothetical protein
92	 61.52	-1	107628..109181	+	517	73537390	-	Reut_B3555	-	hypothetical protein
93	 69.99	+1	109244..110236	-	330	73537391	-	Reut_B3556	-	Acyl-CoA dehydrogenase, C-terminal
94	 69.34	+1	110263..111423	-	386	73537392	-	Reut_B3557	-	Acyl-CoA dehydrogenase, central region
95	 67.07	0	111444..112427	-	327	73537393	-	Reut_B3558	-	hypothetical protein
96	 65.38	0	112491..112958	-	155	73537394	-	Reut_B3559	-	hypothetical protein
97	 68.14	0	112955..114178	-	407	73537395	-	Reut_B3560	-	L-carnitine dehydratase/bile acid-inducible protein F
98	 68.12	0	114281..115174	+	297	73537396	-	Reut_B3561	-	LysR family transcriptional regulator
99	 65.99	0	115250..116431	-	393	73537397	-	Reut_B3562	-	regulatory protein, LuxR
100	 67.58	0	116826..119114	-	762	73537398	-	Reut_B3563	-	MscS mechanosensitive ion channel
65.27	MEAN

3.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.