IslandPath Analysis: Haemophilus ducreyi 35000HP



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.08   STD DEV: 4.33
Haemophilus ducreyi 35000HP, complete genome - 1..1698955
1717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.05	0	296..2188	+	630	33151283	gidA	HD0001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 38.73	0	2293..2904	+	203	33151284	gidB	HD0002	-	glucose-inhibited division protein B
3	 33.33	-1	3220..3603	+	127	33151285	-	HD0003	-	F0F1 ATP synthase subunit I
4	 36.63	0	3629..4417	+	262	33151286	atpB	HD0004	-	F0F1 ATP synthase subunit A
5	 35.29	0	4538..4792	+	84	33151287	atpE	HD0005	-	F0F1 ATP synthase subunit C
6	 38.22	0	4846..5316	+	156	33151288	atpF	HD0006	-	F0F1 ATP synthase subunit B
7	 36.52	0	5330..5863	+	177	33151289	atpH	HD0007	-	F0F1 ATP synthase subunit delta
8	 40.08	0	5876..7417	+	513	33151290	atpA	HD0008	-	F0F1 ATP synthase subunit alpha
9	 36.79	0	7441..8307	+	288	33151291	atpG	HD0009	-	F0F1 ATP synthase subunit gamma
10	 39.30	0	8323..9696	+	457	33151292	atpD	HD0010	-	F0F1 ATP synthase subunit beta
11	 33.33	-1	9736..10155	+	139	33151293	atpC	HD0011	-	F0F1 ATP synthase subunit epsilon
12	 37.02	0	16486..17379	+	297	33151294	xerD	HD0013	-	site-specific tyrosine recombinase XerD
13	 37.53	0	17376..18662	-	428	33151295	mesJ	HD0014	-	cell-cycle protein MesJ
14	 43.60	+1	18773..20233	+	486	33151296	tldD	HD0015	-	TldD protein
15	 41.95	0	20276..21157	+	293	33151297	prmA	HD0016	-	ribosomal protein L11 methyltransferase
16	 32.68	-1	23154..23306	-	50	33151298	-	HD0022	-	hypothetical protein
17	 36.71	0	23295..24359	+	354	33151299	-	HD0023	-	transport system permease protein
18	 36.27	0	24359..24733	+	124	33151300	crcB	HD0024	-	CrcB protein
19	 41.15	0	24825..26168	-	447	33151301	dcuB1	HD0025	-	anaerobic C4-dicarboxylate transporter
20	 42.18	0	26348..27172	+	274	33151302	dapF	HD0026	-	diaminopimelate epimerase
21	 41.36	0	27251..28234	-	327	33151303	genX	HD0029	-	lysyl-tRNA synthetase
22	 41.89	0	28584..30383	+	599	33151304	frdA	HD0030	-	fumarate reductase flavoprotein subunit
23	 38.50	0	30396..31130	+	244	33151305	frdB	HD0032	-	fumarate reductase iron-sulfur subunit
24	 36.43	0	31139..31525	+	128	33151306	frdC	HD0033	-	fumarate reductase subunit C
25	 39.71	0	31535..31879	+	114	33151307	frdD	HD0034	-	fumarate reductase subunit D
26	 35.35	0	32032..32130	+	32	33151308	-	HD0035	-	hypothetical protein
27	 42.34	0	32231..33484	+	417	33151309	lysA	HD0036	-	diaminopimelate decarboxylase
28	 37.91	0	33596..35410	+	604	33151310	chuW	HD0037	-	coproporphyrinogen III oxidase
29	 42.17	0	35412..36011	+	199	33151311	-	HD0038	-	hypothetical protein
30	 40.47	0	36101..37459	-	452	33151312	trmE	HD0039	-	tRNA modification GTPase TrmE
31	 39.23	0	37610..39220	-	536	33151313	yidC	HD0040	-	putative inner membrane protein translocase component YidC
32	 30.21	-1	39217..39312	-	31	33151314	-	HD0041	-	hypothetical protein
33	 39.12	0	39364..39795	-	143	33151315	-	HD0042	-	hypothetical protein
34	 32.50	-1	39765..39884	+	39	33151316	-	HD0043	-	hypothetical protein
35	 31.67	-1	39951..40070	-	39	33151317	-	HD0044	-	hypothetical protein
36	 37.05	0	40269..41480	+	403	33151318	momp	HD0045	-	major outer membrane protein
37	 35.38	0	41761..42984	+	407	33151319	ompA2	HD0046	-	major outer membrane protein homolog, OmpA2
38	 38.71	0	43024..43116	+	30	33151320	-	HD0047	-	hypothetical protein
39	 38.54	0	43035..43130	+	31	33151321	-	HD0048	-	hypothetical protein
40	 36.91	0	43187..43912	+	241	33151322	plsC	HD0049	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
41	 40.31	0	43919..45337	+	472	33151323	sufI	HD0050	-	SufI protein
42	 40.99	0	45469..46422	+	317	33151324	accA	HD0051	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
43	 31.25	-1	46419..46514	-	31	33151325	-	HD0052	-	hypothetical protein
44	 33.92	0	46609..47808	-	399	33151326	-	HD0053	-	hypothetical protein
45	 42.28	0	47920..49104	-	394	33151327	tuf	HD0054	-	elongation factor Tu
46	 27.08	-2	49672..49767	+	31	33151328	-	HD0055	-	hypothetical protein
47	 35.02	0	49866..50816	+	316	33151329	coaA	HD0056	-	pantothenate kinase
48	 38.15	0	50893..51432	+	179	33151330	dsbE1	HD0058	-	thiol:disulfide interchange protein DsbE
49	 41.03	0	52812..53396	+	194	33151331	mogA	HD0061	-	molybdenum cofactor biosynthesis protein
50	 38.64	0	53408..53746	+	112	33151332	glnB	HD0062	-	putative nitrogen regulatory protein P-II
51	 34.98	0	53810..54295	+	161	33151333	lspA	HD0063	-	lipoprotein signal peptidase
52	 42.12	0	54296..55240	+	314	33151334	ispH	HD0064	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
53	 40.16	0	55240..55488	+	82	33151335	-	HD0065	-	hypothetical protein
54	 36.97	0	55564..56937	-	457	33151336	-	HD0066	-	hypothetical protein
55	 38.57	0	57151..57723	-	190	33151337	ftpA	HD0068	-	fine tangled pili major subunit
56	 38.07	0	57947..60142	-	731	33151338	-	HD0069	-	integral membrane protein
57	 32.43	-1	60447..60557	-	36	33151339	-	HD0070	-	hypothetical protein
58	 41.67	0	60848..61375	+	175	33151340	napF	HD0072	-	ferredoxin-type protein NapF
59	 35.98	0	61417..61680	+	87	33151341	napD	HD0073	-	periplasmic nitrate reductase subunit NapD
60	 41.55	0	61718..64201	+	827	33151342	napA	HD0074	-	nitrate reductase
61	 43.00	+1	64322..65221	+	299	33151343	napG	HD0076	-	quinol dehydrogenase periplasmic component
62	 40.16	0	65221..66114	+	297	33151344	napH	HD0077	-	quinol dehydrogenase membrane component
63	 41.04	0	66189..66629	+	146	33151345	napB	HD0078	-	cytochrome c-type protein
64	 38.51	0	66641..67258	+	205	33151346	napC	HD0079	-	cytochrome c-type protein
65	 38.74	0	67395..68429	+	344	33151347	murB	HD0081	-	UDP-N-acetylenolpyruvoylglucosamine reductase
66	 38.35	0	68356..69192	+	278	33151348	birA	HD0082	-	biotin operon represssor
67	 26.19	-2	69227..69352	+	41	33151349	-	HD0083	-	hypothetical protein
68	 42.84	+1	69429..70574	+	381	33151350	lldD	HD0084	-	L-lactate dehydrogenase
69	 40.44	0	70943..71167	-	74	33151351	-	HD0085	-	hypothetical protein
70	 37.60	0	71207..72166	+	319	33151352	rpoH	HD0086	-	RNA polymerase factor sigma-32
71	 31.43	-1	72188..72292	+	34	33151353	-	HD0087	-	hypothetical protein
72	 44.16	+1	72533..73234	-	233	33151354	-	HD0089	-	transcription regulator
73	 44.06	+1	73434..73694	+	86	33151355	ner	HD0090	-	DNA-binding protein
74	 45.97	+1	75767..76684	+	305	33151356	-	HD0095	-	Mu phage DNA transposition protein B
75	 47.01	+2	76684..76917	+	77	33151357	-	HD0096	-	hypothetical protein
76	 48.87	+2	76930..77547	+	205	33151358	-	HD0097	-	hypothetical protein
77	 49.37	+2	77540..77776	+	78	33151359	-	HD0098	-	hypothetical protein
78	 52.08	+2	77879..77974	+	31	33151360	-	HD0099	-	hypothetical protein
79	 37.04	0	78034..78168	+	44	33151361	-	HD0100	-	hypothetical protein
80	 45.66	+1	78171..78389	+	72	33151362	-	HD0101	-	hypothetical protein
81	 36.76	0	78392..78595	+	67	33151363	-	HD0102	-	hypothetical protein
82	 33.33	-1	78592..78927	+	111	33151364	-	HD0103	-	hypothetical protein
83	 37.76	0	78936..79229	+	97	33151365	-	HD0104	-	hypothetical protein
84	 43.90	+1	79231..79968	+	245	33151366	-	HD0105	-	hypothetical protein
85	 41.67	0	79968..80243	+	91	33151367	-	HD0106	-	hypothetical protein
86	 49.68	+2	80321..80791	+	156	33151368	-	HD0107	-	hypothetical protein
87	 44.17	+1	80773..81141	+	122	33151369	-	HD0108	-	hypothetical protein
88	 44.60	+1	81037..81471	-	144	33151370	-	HD0109	-	hypothetical protein
89	 45.59	+1	81119..81583	+	154	33151371	-	HD0110	-	Mu-like phage E16 protein
90	 47.62	+2	81559..81915	+	118	33151372	-	HD0111	-	Mu-like phage C protein, positive regulator of late transcription
91	 50.57	+2	82023..82544	+	173	33151373	-	HD0112	-	N-acetylmuramoyl-L-alanine amidase
92	 42.92	+1	82549..82767	+	72	33151374	-	HD0113	-	hypothetical protein
93	 43.72	+1	82777..83007	+	76	33151375	-	HD0114	-	hypothetical protein
94	 42.11	0	83010..83294	+	94	33151376	-	HD0115	-	hypothetical protein
95	 44.34	+1	83355..84017	-	220	33151377	-	HD0119	-	hypothetical protein
96	 51.95	+2	83414..83644	+	76	33151378	-	HD0117	-	hypothetical protein
97	 40.18	0	83641..83976	+	111	33151379	-	HD0118	-	Mu-like phage gp25
98	 50.46	+2	84064..84279	+	71	33151380	-	HD0120	-	Mu-like phage gp26
99	 48.77	+2	84302..84871	+	189	33151381	-	HD0121	-	Mu-like phage gp27
100	 50.06	+2	84871..86430	+	519	33151382	-	HD0123	-	Mu-like phage gp28
38.08	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.