IslandPath Analysis: Xanthomonas campestris pv. vesicatoria str. 85-10



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.66   STD DEV: 3.90
Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome - 1..5178466
4487 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.29	0	1..1329	+	442	78045557	dnaA	XCV0001	-	chromosomal replication initiation protein
2	 63.22	0	1606..2706	+	366	78045558	dnaN	XCV0002	-	DNA polymerase III subunit beta
3	 66.49	0	3750..4856	+	368	78045559	recF	XCV0003	-	recombination protein F
4	 64.91	0	4917..7415	+	832	78045560	gyrB	XCV0004	-	DNA gyrase subunit B
5	 69.53	+1	7484..8320	+	278	78045561	-	XCV0005	-	putative membrane protease
6	 63.93	0	8504..9271	+	255	78045562	-	XCV0006	-	putative peptidase precursor
7	 60.39	-1	9588..10781	+	397	78045563	-	XCV0007	-	putative secreted protein
8	 64.43	0	10935..11606	+	223	78045564	tonB1	XCV0008	-	energy transducer TonB protein
9	 64.57	0	11692..12453	+	253	78045565	exbB1	XCV0009	-	biopolymer transport ExbB protein
10	 60.05	-1	12500..12922	+	140	78045566	exbD1	XCV0010	-	biopolymer transport ExbD protein
11	 59.66	-1	12926..13339	+	137	78045567	exbD2	XCV0011	-	biopolymer transport ExbD protein
12	 61.52	0	13586..13993	+	135	78045568	exbD3	XCV0012	-	biopolymer transport ExbD protein
13	 67.71	0	14248..15015	-	255	78045569	pdxJ	XCV0013	-	pyridoxal phosphate biosynthetic protein PdxJ
14	 67.78	0	15023..15292	-	89	78045570	-	XCV0014	-	hypothetical protein
15	 66.67	0	15368..16828	-	486	78045571	cls	XCV0015	-	cardiolipin synthetase
16	 54.15	-2	17004..17930	+	308	78045572	-	XCV0016	-	putative secreted protein
17	 55.84	-2	17930..18520	+	196	78045573	-	XCV0017	-	hypothetical protein
18	 65.78	0	18729..19856	-	375	78045574	-	XCV0018	-	hypothetical protein
19	 63.59	0	20064..20777	-	237	78045575	-	XCV0019	-	hypothetical protein
20	 67.11	0	21039..22379	-	446	78045576	fadL	XCV0020	-	FadL family outer membrane protein
21	 67.24	0	22597..23289	+	230	78045577	-	XCV0021	-	rhomboid family membrane protein
22	 59.56	-1	23353..23718	+	121	78045578	-	XCV0022	-	hypothetical protein
23	 69.99	+1	23718..24710	+	330	78045579	serA	XCV0023	-	D-3-phosphoglycerate dehydrogenase
24	 68.24	0	24877..26406	-	509	78045580	ctp	XCV0024	-	periplasmic carboxyl-terminal protease
25	 67.56	0	26511..27746	-	411	78045581	-	XCV0025	-	putative peptidase
26	 65.14	0	27907..28563	+	218	78045582	-	XCV0026	-	putative secreted protein
27	 67.67	0	28725..30521	+	598	78045583	-	XCV0027	-	putative peptidase precursor
28	 63.29	0	30846..31289	-	147	78045584	-	XCV0028	-	putative secreted protein
29	 62.43	0	31584..32717	-	377	78045585	egl1	XCV0029	-	cellulase precursor
30	 62.85	0	32993..33280	-	95	78045586	-	XCV0030	-	putative secreted protein
31	 60.87	0	33347..34399	-	350	78045587	egl2	XCV0031	-	cellulase precursor
32	 61.97	0	34633..34866	-	77	78045588	-	XCV0032	-	hypothetical protein
33	 62.48	0	35167..36240	-	357	78045589	egl3	XCV0033	-	cellulase precursor
34	 64.78	0	36551..37609	+	352	78045590	-	XCV0034	-	Zinc-containing alcohol dehydrogenase superfamily protein
35	 51.70	-2	38332..38772	-	146	78045591	-	XCV0035	-	hypothetical protein
36	 68.29	0	38809..40290	-	493	78045592	gltD	XCV0036	-	glutamate synthase subunit beta
37	 68.19	0	40419..44891	-	1490	78045593	gltB	XCV0037	-	glutamate synthase subunit alpha
38	 64.83	0	45094..45474	-	126	78045594	-	XCV0038	-	putative secreted protein
39	 65.96	0	45531..46808	+	425	78045595	-	XCV0039	-	putative DNA topoisomerase I
40	 69.57	+1	47025..47369	-	114	78045596	-	XCV0040	-	putative secreted protein
41	 64.11	0	47618..48985	+	455	78045597	-	XCV0041	-	putative penicillin amidase (fragment)
42	 64.49	0	48913..50016	+	367	78045598	-	XCV0042	-	putative penicillin amidase (fragment)
43	 65.75	0	50096..50965	-	289	78045599	-	XCV0043	-	putative secreted protein
44	 66.78	0	51118..52005	+	295	78045600	-	XCV0044	-	LysR family transcriptional regulator
45	 67.18	0	52209..52595	+	128	78045601	-	XCV0045	-	putative penicillinase repressor family protein
46	 69.71	+1	52599..54338	+	579	78045602	-	XCV0046	-	BlaR1 peptidase M56 family protein
47	 68.29	0	55019..56068	+	349	78045603	-	XCV0047	-	putative secreted protein
48	 69.76	+1	56156..57286	+	376	78045604	-	XCV0048	-	putative secreted protein
49	 64.38	0	57425..58210	-	261	78045605	-	XCV0049	-	putative secreted protein
50	 67.72	0	58221..60878	-	885	78045606	-	XCV0050	-	TonB-dependent outer membrane receptor
51	 66.82	0	60846..62138	+	430	78045607	-	XCV0051	-	ROK family transcriptional regulator
52	 63.59	0	62327..64471	+	714	78045608	avrBs2	XCV0052	-	avirulence protein AvrBs2
53	 68.33	0	64604..64843	+	79	78045609	-	XCV0053	-	hypothetical protein
54	 68.85	+1	64955..66418	-	487	78045610	-	XCV0054	-	hypothetical protein
55	 66.11	0	66415..68910	-	831	78045611	-	XCV0055	-	putative helicase
56	 66.82	0	69088..69750	+	220	78045612	-	XCV0056	-	hemolysin-III family membrane protein
57	 59.30	-1	69816..70073	+	85	78045613	-	XCV0057	-	hypothetical protein
58	 60.28	-1	70082..70363	+	93	78045614	-	XCV0058	-	hypothetical protein
59	 68.89	+1	70546..71445	-	299	78045615	-	XCV0059	-	short chain oxidoreductase precursor
60	 66.26	0	71505..72242	-	245	78045616	-	XCV0060	-	short chain dehydrogenase
61	 62.61	0	72385..72729	+	114	78045617	-	XCV0061	-	LysR family transcriptional regulator
62	 41.12	-2	73438..75003	+	521	78045618	-	XCV0062	-	putative ATP-binding protein
63	 44.31	-2	75934..76689	-	251	78045619	-	XCV0063	-	putative protein kinase
64	 63.11	0	76728..77177	-	149	78045620	-	XCV0064	-	putative secreted protein
65	 58.80	-1	77406..77672	+	88	78045621	-	XCV0065	-	IS1477 transposase
66	 62.95	0	77705..78538	+	277	78045622	-	XCV0066	-	IS1477 transposase
67	 65.08	0	78565..78753	-	62	78045623	-	XCV0067	-	hypothetical protein
68	 56.33	-2	79153..81039	-	628	78045624	-	XCV0068	-	hypothetical protein
69	 48.77	-2	81056..81703	-	215	78045625	-	XCV0069	-	putative secreted protein
70	 65.03	0	82229..82411	-	60	78045626	-	XCV0070	-	hypothetical protein
71	 58.20	-1	82639..82827	-	62	78045627	-	XCV0071	-	hypothetical protein
72	 71.79	+1	83064..84233	-	389	78045628	-	XCV0072	-	putative secreted protein
73	 64.27	0	84393..84977	+	194	78045629	-	XCV0073	-	hypothetical protein
74	 68.91	+1	85278..85589	-	103	78045630	-	XCV0074	-	hypothetical protein
75	 68.83	+1	85586..86650	-	354	78045631	-	XCV0075	-	Zinc metalloprotease
76	 68.95	+1	86760..87416	-	218	78045632	-	XCV0076	-	hypothetical protein
77	 69.76	+1	87674..88126	+	150	78045633	-	XCV0077	-	putative NUDIX hydrolase family protein
78	 68.71	+1	88167..92132	+	1321	78045634	-	XCV0078	-	putative membrane-associated peptidase
79	 63.66	0	92516..92914	+	132	78045635	-	XCV0079	-	hypothetical protein
80	 63.64	0	92935..93264	+	109	78045636	-	XCV0080	-	putative thioredoxin
81	 65.12	0	93797..95287	+	496	78045637	proP	XCV0081	-	metabolite:H+ symporter family protein
82	 64.14	0	95631..96104	-	157	78045638	-	XCV0082	-	hypothetical protein
83	 67.77	0	96251..97069	+	272	78045639	-	XCV0083	-	hypothetical protein
84	 66.82	0	97266..97916	+	216	78045640	-	XCV0084	-	hypothetical protein
85	 74.64	+2	98176..99957	-	593	78045641	-	XCV0085	-	hypothetical protein
86	 73.56	+2	99954..102374	-	806	78045642	-	XCV0086	-	hypothetical protein
87	 72.58	+2	102371..103570	-	399	78045643	-	XCV0087	-	hypothetical protein
88	 68.22	0	103614..104513	-	299	78045644	-	XCV0088	-	hypothetical protein
89	 67.67	0	104527..105519	-	330	78045645	-	XCV0089	-	MoxR-like ATPase
90	 59.95	-1	105632..106450	-	272	78045646	-	XCV0090	-	hypothetical protein
91	 63.07	0	106447..107781	-	444	78045647	-	XCV0091	-	putative modulator of DNA gyrase
92	 64.65	0	107796..109430	-	544	78045648	-	XCV0092	-	putative modulator of DNA gyrase
93	 64.70	0	110149..111777	-	542	78045649	-	XCV0093	-	putative modulator of DNA gyrase
94	 61.28	0	112149..112538	-	129	78045650	-	XCV0094	-	hypothetical protein
95	 53.33	-2	112604..112828	-	74	78045651	-	XCV0095	-	hypothetical protein
96	 58.66	-1	112976..113362	-	128	78045652	-	XCV0096	-	hypothetical protein
97	 61.38	0	113443..113934	-	163	78045653	-	XCV0097	-	putative secreted protein
98	 64.58	0	114233..115288	-	351	78045654	cbbFC	XCV0098	-	fructose-1,6-bisphosphatase
99	 55.62	-2	115817..116803	-	328	78045655	-	XCV0099	-	putative secreted protein
100	 45.79	-2	116808..117650	-	280	78045656	-	XCV0100	-	putative secreted protein
64.66	MEAN

3.90	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.