IslandPath Analysis: uncultured methanogenic archaeon RC-I



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.81   STD DEV: 5.27
Uncultured methanogenic archaeon RC-I, complete genome - 1..3179916
3085 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.31	0	281..1099	+	272	147918683	ppnK	LRC51	-	NAD(+) kinase
2	 58.06	0	1487..2392	+	301	147918684	-	LRC50	-	hypothetical protein
3	 55.37	0	2481..3383	+	300	147918685	-	LRC49	-	hypothetical protein
4	 58.41	0	3836..5374	-	512	147918686	-	LRC48	-	hypothetical protein
5	 58.91	0	5374..6714	-	446	147918687	rad25	LRC47	-	putative DNA repair protein 25
6	 53.09	0	6871..7533	+	220	147918688	prx1-2	LRC46	-	1-cysteine peroxiredoxin
7	 56.24	0	7578..8210	+	210	147918689	-	LRC45	-	hypothetical protein
8	 52.27	0	8317..8823	-	168	147918690	-	LRC44	-	hypothetical protein
9	 59.44	0	8857..10239	-	460	147918691	-	LRC43	-	glycerol-3-phosphate dehydrogenase
10	 56.00	0	10626..12125	+	499	147918692	-	LRC42	-	hypothetical protein
11	 57.77	0	12127..13104	+	325	147918693	-	LRC41	-	hypothetical protein
12	 56.39	0	13172..14047	-	291	147918694	-	LRC40	-	hypothetical protein
13	 57.17	0	14189..15157	+	322	147918695	rfc	LRC39	-	replication factor C small subunit
14	 61.00	0	15326..15784	+	152	147918696	-	LRC37	-	hypothetical protein
15	 54.17	0	16189..16644	-	151	147918697	-	LRC36	-	hypothetical protein
16	 57.18	0	16631..18001	-	456	147918698	-	LRC35	-	hypothetical protein
17	 56.38	0	18348..18833	-	161	147918699	-	LRC34	-	hypothetical protein
18	 51.85	0	19033..19302	+	89	147918700	-	LRC33	-	hypothetical protein
19	 56.37	0	19387..19959	+	190	147918701	-	LRC32	-	hypothetical protein
20	 58.21	0	19995..20621	-	208	147918702	-	LRC31	-	hypothetical protein
21	 60.95	0	20761..21582	-	273	147918703	-	NRC1	-	hypothetical protein
22	 58.46	0	22195..23376	+	393	147918704	ftsZ-3	LRC30	-	putative cell division GTPase Z
23	 50.46	-1	23461..23676	+	71	147918705	secE	LRC29	-	preprotein translocase subunit SecE
24	 58.99	0	23688..24182	+	164	147918706	nusG	LRC28	-	transcription antitermination protein NusG
25	 50.52	-1	24396..24872	+	158	147918707	rpl11p	LRC27	-	50S ribosomal protein L11P
26	 54.67	0	24975..25616	+	213	147918708	rpl1P	LRC26	-	50S ribosomal protein L1P
27	 56.72	0	25619..26533	+	304	147918709	rplP0	LRC25	-	acidic ribosomal protein P0
28	 60.90	0	26556..26867	+	103	147918710	rpl12p	LRC24	-	50S ribosomal protein L12P
29	 55.82	0	27034..27798	+	254	147918711	-	LRC23	-	KaiC family ATPase
30	 58.27	0	27925..28722	+	265	147918712	-	LRC22	-	hypothetical protein
31	 55.75	0	28797..29666	+	289	147918713	rfbD-2	LRC21	-	dTDP-4-dehydrorhamnose reductase
32	 49.00	-1	29673..29921	-	82	147918714	-	LRC20	-	hypothetical protein
33	 60.49	0	30058..32517	-	819	147918715	-	LRC18	-	putative proteinase
34	 57.82	0	33220..34383	+	387	147918716	ftsZ-2	LRC17	-	putative cell division GTPase Z
35	 50.98	0	34515..34871	+	118	147918717	-	LRC16	-	hypothetical protein
36	 54.97	0	34994..36823	+	609	147918718	-	LRC15	-	hypothetical protein
37	 55.84	0	37527..38828	+	433	147918719	paaK-3	LRC14	-	putative phenylacetate--coenzyme A ligase
38	 57.89	0	38912..40222	+	436	147918720	paaK-2	LRC13	-	putative phenylacetate--coenzyme A ligase
39	 58.16	0	40248..40682	+	144	147918721	-	LRC11	-	amino acid-binding protein
40	 55.00	0	41133..42161	-	342	147918722	-	LRC10	-	hypothetical protein
41	 52.27	0	42344..42607	-	87	147918723	-	LRC9	-	hypothetical protein
42	 53.12	0	42615..43256	+	213	147918724	-	LRC8	-	hypothetical protein
43	 55.96	0	43289..44539	-	416	147918725	paaK-1	LRC7	-	putative phenylacetate--coenzyme A ligase
44	 54.74	0	45158..45526	-	122	147918726	mutSa	LRC6	-	putative DNA mismatch repair protein, C-terminal fragment
45	 55.71	0	45568..47265	-	565	147918727	mutSb	LRC5	-	putative DNA mismatch repair protein, N-terminal fragment
46	 56.37	0	47380..48078	-	232	147918728	-	LRC4	-	hypothetical protein
47	 57.56	0	48196..50436	-	746	147918729	-	LRC3	-	ATP-dependent RNA helicase
48	 56.27	0	50423..51403	-	326	147918730	-	LRC2	-	hypothetical protein
49	 58.18	0	52184..53833	-	549	147918731	hsp60-4	RM7	-	chaperonin Hsp60 (GroEL-like)
50	 57.49	0	53976..54422	-	148	147918732	-	RRC535	-	hypothetical protein
51	 49.59	-1	54512..54874	-	120	147918733	-	RRC534	-	hypothetical protein
52	 53.24	0	55430..56323	+	297	147918734	-	RM2	-	hypothetical protein
53	 55.53	0	56927..58138	+	403	147918735	pgk-2	RRC531	-	3-phosphoglycerate kinase
54	 50.31	-1	58363..59499	+	378	147918736	mscS-5	RRC528	-	putative small-conductance mechanosensitive ion channel
55	 53.76	0	59513..60070	-	185	147918737	-	RRC526	-	uracil-DNA glycosylase superfamily protein
56	 55.92	0	60121..61869	-	582	147918738	-	RRC525	-	hypothetical protein
57	 53.91	0	61996..62340	-	114	147918739	-	RRC524	-	hypothetical protein
58	 56.74	0	62512..62793	-	93	147918740	-	RRC523	-	hypothetical protein
59	 57.28	0	62795..64402	-	535	147918741	-	RRC522	-	hypothetical protein
60	 53.77	0	64613..65209	+	198	147918742	-	RRC521	-	hypothetical protein
61	 55.17	0	65243..66016	-	257	147918743	dphB	RRC519	-	diphthine synthase
62	 54.49	0	66054..67022	-	322	147918744	-	RRC517	-	hypothetical protein
63	 48.29	-1	67197..68339	+	380	147918745	-	RRC516	-	hypothetical protein
64	 55.23	0	68434..69447	+	337	147918746	-	RRC515	-	putative SAM-dependent methyltransferase
65	 56.94	0	70023..70814	-	263	147918747	aqpM	RRC514	-	putative aquaporin
66	 57.86	0	70849..72369	-	506	147918748	-	RRC513	-	hypothetical protein
67	 44.65	-2	73064..73708	+	214	147918749	-	RRC511	-	hypothetical protein
68	 57.62	0	73712..74827	-	371	147918750	-	RRC510	-	FMN oxidoreductase
69	 53.45	0	75509..76030	+	173	147918751	-	RRC508	-	hypothetical protein
70	 56.57	0	76088..77305	-	405	147918752	-	RRC507	-	major facilitator superfamily permease
71	 56.15	0	77389..77835	+	148	147918753	-	RRC506	-	signal transduction protein
72	 55.14	0	78034..78519	-	161	147918754	flr	RRC505	-	putative flavoredoxin
73	 59.84	0	78822..79202	-	126	147918755	-	RRC504	-	hypothetical protein
74	 51.41	0	79510..79935	-	141	147918756	-	RRC502	-	pyridoxamine 5'-phosphate oxidase family protein
75	 43.75	-2	79948..80187	+	79	147918757	-	NRC29	-	hypothetical protein
76	 57.66	0	80257..81111	+	284	147918758	hibD	RRC500	-	putative 3-hydroxyisobutyrate dehydrogenase
77	 57.22	0	81128..82090	-	320	147918759	pfkA	RRC499	-	ATP-dependent 6-phosphofructokinase
78	 55.07	0	82188..83015	+	275	147918760	-	RRC498	-	hypothetical protein
79	 56.61	0	83360..84532	+	390	147918761	-	RRC497	-	alanyl-tRNS synthetase-related protein
80	 56.50	0	84663..85262	+	199	147918762	-	RRC496	-	hypothetical protein
81	 53.68	0	85281..85919	-	212	147918763	-	RRC495	-	hypothetical protein
82	 51.40	0	86286..86750	+	154	147918764	-	RM1	-	hypothetical protein
83	 54.64	0	86747..87844	-	365	147918765	-	RRC493	-	hypothetical protein
84	 56.87	0	87973..88860	+	295	147918766	-	RRC492	-	hypothetical protein
85	 56.97	0	88904..90295	-	463	147918767	-	RRC491	-	hypothetical protein
86	 49.59	-1	90450..90812	+	120	147918768	-	RRC490	-	putative response regulator (CheY-like)
87	 54.87	0	90814..91491	-	225	147918769	-	RRC489	-	riboflavin specific deaminase
88	 58.36	0	91535..92329	-	264	147918770	-	RRC488	-	hypothetical protein
89	 45.28	-1	92366..92725	+	119	147918771	-	RRC487	-	hypothetical protein
90	 51.09	0	93605..93925	-	106	147918772	-	RRC486	-	ArsR family transcriptional regulator
91	 55.31	0	94209..95141	-	310	147918773	-	RRC485	-	hypothetical protein
92	 56.15	0	95277..95951	-	224	147918774	-	RRC483	-	molybdopterin-binding protein (CinA-like)
93	 54.33	0	95953..96633	-	226	147918775	-	RRC482	-	hypothetical protein
94	 57.43	0	97027..98715	+	562	147918776	sat	RRC481	-	sulfate adenylyltransferase (sulfurylase)
95	 56.72	0	98722..99666	-	314	147918777	-	RRC480	-	putative trypsin-like protease
96	 58.04	0	99815..100405	+	196	147918778	-	RRC479	-	hypothetical protein
97	 50.60	0	100551..102398	+	615	147918779	-	RRC477	-	putative signal transduction histidine kinase
98	 49.88	-1	102556..102960	+	134	147918780	-	RRC476	-	putative response regulator (CheY-like)
99	 53.24	0	102978..104273	-	431	147918781	-	RRC475	-	arsenical pump membrane family protein
100	 57.56	0	104270..105082	-	270	147918782	pheA	RRC474	-	putative prephenate dehydratase
55.81	MEAN

5.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.