IslandPath Analysis: Lactobacillus salivarius UCC118



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.80   STD DEV: 3.30
Lactobacillus salivarius UCC118, complete genome - 1..1827111
1717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.09	0	1..1365	+	454	90960991	dnaA	LSL_0001	-	chromosomal replication initiation protein
2	 32.02	0	1532..2671	+	379	90960992	dnaN	LSL_0002	-	DNA polymerase III, beta chain
3	 32.43	0	3088..3309	+	73	90960993	-	LSL_0003	-	hypothetical protein
4	 33.51	0	3309..4448	+	379	90960994	recF	LSL_0004	-	recombination protein F
5	 35.43	0	4451..6409	+	652	90960995	gyrB	LSL_0005	-	DNA gyrase subunit B
6	 36.08	0	6446..8998	+	850	90960996	gyrA	LSL_0006	-	DNA gyrase subunit A
7	 37.11	+1	9217..9507	+	96	90960997	rpsF	LSL_0007	-	30S ribosomal protein S6
8	 38.22	+1	9548..10099	+	183	90960998	ssb	LSL_0008	-	single-strand DNA binding protein
9	 42.62	+2	10121..10357	+	78	90960999	rpsR	LSL_0009	-	30S ribosomal protein S18
10	 36.57	+1	10418..11281	-	287	90961000	mmsB	LSL_0010	-	3-hydroxyisobutyrate dehydrogenase
11	 30.67	0	11427..12440	+	337	90961001	rfaG	LSL_0011	-	glycosyltransferase
12	 33.96	0	13691..15613	+	640	90961002	asnB	LSL_0012	-	asparagine synthetase
13	 30.16	0	16466..16843	+	125	90961003	mscL	LSL_0013	-	large-conductance mechanosensitive channel
14	 37.36	+1	16903..18789	-	628	90961004	-	LSL_0014	-	pyruvate oxidase
15	 32.72	0	19313..19639	+	108	90961005	-	LSL_0015	-	hypothetical protein
16	 34.12	0	19783..21315	+	510	90961006	murE	LSL_0016	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
17	 32.93	0	21315..22565	+	416	90961007	-	LSL_0017	-	hypothetical protein
18	 32.35	0	22575..23288	+	237	90961008	racX	LSL_0018	-	aspartate racemase
19	 37.42	+1	23323..24546	-	407	90961009	-	LSL_0019	-	multidrug resistance efflux pump
20	 32.63	0	24679..25245	+	188	90961010	-	LSL_0020	-	TetR family transcriptional regulator
21	 37.95	+1	25365..26231	+	288	90961011	-	LSL_0021	-	glucose uptake protein
22	 38.60	+1	26461..27807	+	448	90961012	-	LSL_0022	-	hypothetical protein
23	 34.22	0	27822..28382	+	186	90961013	-	LSL_0023	-	hypothetical protein
24	 35.41	0	28581..29495	+	304	90961014	-	LSL_0024	-	drug/metabolite exporter family protein
25	 34.89	0	29664..31466	-	600	90961015	-	LSL_0025	-	oligoendopeptidase F
26	 36.38	+1	31822..32739	+	305	90961016	cysK	LSL_0026	-	cysteine synthase
27	 35.61	0	32755..33897	+	380	90961017	metC	LSL_0027	-	cystathionine beta-lyase / cystathionine gamma-lyase
28	 35.26	0	34052..35143	+	363	90961018	gldA	LSL_0028	-	glycerol dehydrogenase
29	 37.01	+1	35246..35680	+	144	90961019	-	LSL_0029	-	methionine sulfoxide reductase B
30	 29.63	0	35796..36092	+	98	90961020	-	LSL_0030	-	DNA-damage-inducible protein J
31	 28.22	-1	38074..38523	+	149	90961021	-	LSL_0031	-	MarR family transcriptional regulator
32	 35.06	0	38535..40268	+	577	90961022	-	LSL_0032	-	multidrug ABC transporter permease/ATP-binding protein
33	 33.78	0	40261..42042	+	593	90961023	-	LSL_0033	-	multidrug/protein/lipid ABC transporter family ATP-binding and permease
34	 35.29	0	42151..42966	+	271	90961024	-	LSL_0034	-	HAD superfamily hydrolase
35	 36.99	+1	43139..43849	+	236	90961025	-	LSL_0035	-	two-component response regulator
36	 35.64	0	43878..45743	+	621	90961026	-	LSL_0036	-	two-component sensor kinase yycG
37	 32.66	0	45733..47070	+	445	90961027	-	LSL_0037	-	hypothetical protein
38	 32.96	0	47082..47882	+	266	90961028	-	LSL_0038	-	hypothetical protein
39	 37.56	+1	48364..49167	+	267	90961029	phnP	LSL_0041	-	zinc-dependent hydrolase
40	 36.16	+1	49266..50573	+	435	90961030	degP	LSL_0042	-	endopeptidase
41	 32.92	0	50970..51449	+	159	90961031	-	LSL_0043	-	SPOUT methyltransferase superfamily protein
42	 35.96	0	51615..52262	+	215	90961032	-	LSL_0044	-	oxidoreductase
43	 33.59	0	52274..52666	+	130	90961033	-	LSL_0045	-	hypothetical protein
44	 36.75	+1	52659..53507	+	282	90961034	-	LSL_0046	-	Short chain dehydrogenase
45	 33.07	0	53643..54395	+	250	90961035	-	LSL_0047	-	hypothetical protein
46	 40.75	+2	54734..56122	-	462	90961036	glpT	LSL_0048	-	glycerol-3-phosphate transporter
47	 34.30	0	56327..56845	+	172	90961037	-	LSL_0049	-	IS1223 family transposase
48	 28.85	-1	57833..58300	-	155	90961038	-	LSL_0050	-	IS200 family transposase
49	 30.77	0	60583..60777	-	64	90961039	-	LSL_0051	-	hypothetical protein
50	 35.63	0	60786..62045	+	419	90961040	-	LSL_0052	-	Na+ driven multidrug efflux pump
51	 34.48	0	62094..63575	-	493	90961041	-	LSL_0053	-	ABC transporter, ATP-binding protein
52	 34.76	0	63881..64300	+	139	90961042	-	LSL_0054	-	hypothetical protein
53	 40.51	+2	64386..64970	+	194	90961043	ppiB	LSL_0055	-	peptidyl-prolyl cis-trans isomerase
54	 37.78	+1	65121..65840	+	239	90961044	-	LSL_0056	-	glutamine amidotransferase, class I
55	 36.94	+1	65893..67251	-	452	90961045	gshA	LSL_0057	-	glutamate--cysteine ligase
56	 36.80	+1	67454..67684	+	76	90961046	-	LSL_0058	-	hypothetical protein
57	 36.42	+1	67810..69918	+	702	90961047	clpL	LSL_0059	-	ATP-dependent Clp protease ATP-binding subunit
58	 36.48	+1	70130..70606	+	158	90961048	-	LSL_0060	-	universal stress protein
59	 27.12	-1	70667..70843	-	58	90961049	-	LSL_0061	-	hypothetical protein
60	 33.74	0	70946..72403	-	485	90961050	glnP	LSL_0062	-	glutamine-binding protein / glutamine transport system permease protein
61	 40.19	+2	72643..73677	-	344	90961051	ilvE	LSL_0063	-	branched-chain amino acid aminotransferase
62	 32.73	0	79497..80489	-	330	90961052	scrR	LSL_0064	-	sucrose operon repressor
63	 34.88	0	80508..81998	-	496	90961053	scrB	LSL_0065	-	sucrose-6-phosphate hydrolase
64	 37.88	+1	82401..84335	+	644	90961054	scrA	LSL_0066	-	PTS system, sucrose-specific IIABC component
65	 31.67	0	84450..86195	+	581	90961055	amyB	LSL_0067	-	neopullulanase / cyclomaltodextrinase / maltogenic alpha-amylase
66	 35.57	0	86310..87698	+	462	90961056	ktrB	LSL_0068	-	potassium uptake protein ktrB
67	 35.05	0	87718..88356	+	212	90961057	ktrA	LSL_0069	-	potassium uptake protein
68	 34.86	0	88433..89086	+	217	90961058	-	LSL_0070	-	putative Zn-dependent protease
69	 29.40	-1	89113..90129	+	338	90961059	-	LSL_0071	-	N-acetylglucosaminyltransferase
70	 26.01	-2	90207..90479	-	90	90961060	-	LSL_0072	-	hypothetical protein
71	 34.67	0	90664..92457	+	597	90961061	-	LSL_0073	-	hypothetical protein
72	 34.45	0	92594..93130	+	178	90961062	-	LSL_0074	-	BioY protein
73	 34.29	0	93373..94629	+	418	90961063	dacC	LSL_0075	-	D-alanyl-D-alanine serine-type carboxypeptidase
74	 33.08	0	94842..95618	+	258	90961064	-	LSL_0076	-	DeoR family transcriptional regulator
75	 32.05	0	97235..97936	-	233	90961065	-	LSL_0077	-	hypothetical protein
76	 38.34	+1	97936..99414	-	492	90961066	-	LSL_0078	-	multidrug resistance protein B
77	 31.10	0	99569..100015	+	148	90961067	-	LSL_0079	-	MerR family transcriptional regulator
78	 34.91	0	100015..100395	+	126	90961068	gloA	LSL_0080	-	glyoxalase family protein
79	 34.79	0	100444..101130	-	228	90961069	-	LSL_0081	-	hypothetical protein
80	 32.64	0	101288..102583	-	431	90961070	-	LSL_0082	-	putative sugar-binding protein
81	 35.01	0	102593..103249	-	218	90961071	-	LSL_0083	-	two-component response regulator
82	 33.10	0	103265..104566	-	433	90961072	baeS	LSL_0084	-	two component system histidine kinase
83	 34.24	0	104563..105555	-	330	90961073	rbsB	LSL_0085	-	D-ribose-binding protein
84	 37.04	+1	105826..106824	+	332	90961074	manX	LSL_0086	-	PTS system, mannose-specific IIAB component
85	 41.85	+2	106843..107652	+	269	90961075	-	LSL_0087	-	PTS system, mannose-specific IIC component
86	 37.05	+1	107671..108585	+	304	90961076	-	LSL_0088	-	PTS system, mannose-specific IID component
87	 34.36	0	108607..108996	+	129	90961077	-	LSL_0089	-	hypothetical protein
88	 38.88	+1	109121..110671	-	516	90961078	-	LSL_0090	-	hypothetical protein
89	 32.42	0	111092..112183	+	363	90961079	serC	LSL_0091	-	phosphoserine aminotransferase
90	 34.51	0	112191..113375	+	394	90961080	serA	LSL_0092	-	D-3-phosphoglycerate dehydrogenase
91	 33.00	0	113377..113973	+	198	90961081	-	LSL_0093	-	Uracil DNA glycosylase superfamily protein
92	 30.92	0	114069..114566	+	165	90961082	-	LSL_0094	-	hypothetical protein
93	 28.55	-1	114740..118189	+	1149	90961083	-	LSL_0095	-	hypothetical protein
94	 28.34	-1	118318..118758	+	146	90961084	-	LSL_0096	-	hypothetical protein
95	 28.57	-1	118704..118871	-	55	90961085	-	LSL_0097	-	hypothetical protein
96	 27.81	-1	118952..119857	+	301	90961086	cas1	LSL_0098	-	CRISPR-associated protein
97	 27.45	-1	119835..120140	+	101	90961087	cas2	LSL_0099	-	CRISPR-associated protein
98	 29.91	0	120137..120808	+	223	90961088	-	LSL_0100	-	CRISPR-associated Csn2 family protein
99	 31.15	0	122941..123261	+	106	90961089	-	LSL_0105	-	PadR family transcriptional regulator
100	 33.66	0	123264..123869	+	201	90961090	-	LSL_0106	-	hypothetical protein
32.80	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.