IslandPath Analysis: Sulfurimonas denitrificans DSM 1251



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.46   STD DEV: 3.28
Sulfurimonas denitrificans DSM 1251, complete genome - 1..2201561
2096 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.20	-1	15..1322	+	435	78776202	dnaA	Suden_0001	-	chromosomal replication initiation protein
2	 24.81	-2	1490..2557	+	355	78776203	-	Suden_0002	-	DNA polymerase III subunit beta
3	 33.68	0	2707..5016	+	769	78776204	gyrB	Suden_0003	-	DNA gyrase subunit B
4	 30.69	-1	5041..5418	+	125	78776205	-	Suden_0004	-	7-cyano-7-deazaguanine reductase
5	 28.24	-1	5407..6642	-	411	78776206	-	Suden_0005	-	polynucleotide adenylyltransferase region
6	 37.83	+1	6798..8600	+	600	78776207	-	Suden_0006	-	GTP-binding protein TypA
7	 34.11	0	8748..10673	+	641	78776208	-	Suden_0007	-	TonB-dependent receptor
8	 29.05	-1	10712..12604	-	630	78776209	-	Suden_0008	-	histidine kinase
9	 29.78	-1	12601..13275	-	224	78776210	-	Suden_0009	-	two component transcriptional regulator
10	 40.77	+1	13468..16977	+	1169	78776211	-	Suden_0010	-	filamentous haemagglutinin-like
11	 38.56	+1	16989..18692	+	567	78776212	-	Suden_0011	-	hemolysin activation/secretion protein-like
12	 35.50	0	18752..19672	-	306	78776213	-	Suden_0012	-	bifunctional methionine sulfoxide reductase B/A protein
13	 32.84	0	19839..20861	+	340	78776214	nrdF	Suden_0013	-	ribonucleotide-diphosphate reductase subunit beta
14	 35.35	0	20848..21591	+	247	78776215	-	Suden_0014	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
15	 37.19	0	21575..22222	+	215	78776216	pcm	Suden_0015	-	protein-L-isoaspartate O-methyltransferase
16	 34.44	0	22219..23298	+	359	78776217	-	Suden_0016	-	phospholipase A1
17	 32.73	0	23358..24191	+	277	78776218	-	Suden_0017	-	thymidylate synthase complementing protein ThyX
18	 35.19	0	24196..24411	+	71	78776219	-	Suden_0018	-	hypothetical protein
19	 37.66	0	24423..24977	+	184	78776220	-	Suden_0019	-	PhnA protein
20	 32.30	0	24996..26159	+	387	78776221	-	Suden_0020	-	diguanylate cyclase
21	 32.15	0	26170..27267	+	365	78776222	-	Suden_0021	-	deoxyguanosinetriphosphate triphosphohydrolase
22	 38.03	+1	27313..27525	-	70	78776223	rpsU	Suden_0022	-	30S ribosomal protein S21
23	 37.75	+1	27963..29615	+	550	78776224	dnaG	Suden_0023	-	DNA primase
24	 35.78	0	29605..30627	-	340	78776225	-	Suden_0024	-	hypothetical protein
25	 36.59	0	30766..31962	+	398	78776226	-	Suden_0025	-	DEAD/DEAH box helicase-like
26	 38.33	+1	32011..32991	+	326	78776227	-	Suden_0026	-	thiamine biosynthesis protein:ExsB
27	 30.70	-1	33039..33455	+	138	78776228	-	Suden_0027	-	hypothetical protein
28	 31.67	0	33442..33681	-	79	78776229	-	Suden_0028	-	hypothetical protein
29	 34.31	0	33761..35395	+	544	78776230	-	Suden_0029	-	flagellar hook-length control protein
30	 37.24	0	35500..36165	+	221	78776231	-	Suden_0030	-	flagellar hook capping protein
31	 37.12	0	36177..37469	+	430	78776232	-	Suden_0031	-	hypothetical protein
32	 39.31	+1	37633..39789	+	718	78776233	flgE	Suden_0032	-	flagellar hook protein FlgE
33	 40.64	+1	39919..41082	+	387	78776234	purT	Suden_0033	-	phosphoribosylglycinamide formyltransferase 2
34	 36.22	0	41083..42018	+	311	78776235	-	Suden_0034	-	2-hydroxyacid dehydrogenase
35	 36.29	0	42048..42419	+	123	78776236	-	Suden_0035	-	cytoplasmic membrane protein
36	 31.16	-1	42449..45019	+	856	78776237	-	Suden_0036	-	histidine kinase
37	 37.89	+1	45009..46610	+	533	78776238	-	Suden_0037	-	succinate dehydrogenase/fumarate reductase flavoprotein subunit
38	 36.60	0	46600..47304	+	234	78776239	-	Suden_0038	-	succinate dehydrogenase/fumarate reductase iron-sulfur protein
39	 32.33	0	47477..47974	+	165	78776240	-	Suden_0039	-	nucleotide-binding protein
40	 31.99	0	47986..48654	+	222	78776241	-	Suden_0040	-	hypothetical protein
41	 30.68	-1	48904..49356	+	150	78776242	-	Suden_0041	-	hypothetical protein
42	 34.39	0	49359..50867	-	502	78776243	-	Suden_0042	-	radical SAM family protein
43	 36.41	0	51033..52298	-	421	78776244	-	Suden_0043	-	methyl-accepting chemotaxis sensory transducer
44	 34.56	0	52327..52815	-	162	78776245	-	Suden_0044	-	putative PAS/PAC sensor protein
45	 32.06	0	52872..54053	+	393	78776246	-	Suden_0045	-	putative MFS metabolite transporter
46	 31.47	0	54031..54837	-	268	78776247	-	Suden_0046	-	putative salt-induced outer membrane protein-like
47	 31.49	0	54842..55654	-	270	78776248	-	Suden_0047	-	MscS mechanosensitive ion channel
48	 32.12	0	55698..56027	-	109	78776249	-	Suden_0048	-	hypothetical protein
49	 38.14	+1	56020..56331	-	103	78776250	-	Suden_0049	-	hypothetical protein
50	 35.07	0	56333..57082	-	249	78776251	-	Suden_0050	-	putative manganese transport system permease protein
51	 35.84	0	57079..57957	-	292	78776252	-	Suden_0051	-	periplasmic solute binding protein
52	 39.56	+1	58078..59361	-	427	78776253	-	Suden_0052	-	hypothetical protein
53	 36.33	0	59422..59688	-	88	78776254	-	Suden_0053	-	hypothetical protein
54	 33.33	0	59899..60195	+	98	78776255	-	Suden_0054	-	hypothetical protein
55	 35.93	0	60204..62282	+	692	78776256	-	Suden_0055	-	phosphate acetyltransferase
56	 35.64	0	62279..63448	+	389	78776257	-	Suden_0056	-	acetate kinase
57	 33.95	0	63445..63768	-	107	78776258	-	Suden_0057	-	hypothetical protein
58	 30.56	-1	63938..64621	-	227	78776259	-	Suden_0058	-	hypothetical protein
59	 34.25	0	64683..65339	+	218	78776260	-	Suden_0059	-	hypothetical protein
60	 34.27	0	65336..65761	+	141	78776261	-	Suden_0060	-	hypothetical protein
61	 40.02	+1	65748..66719	+	323	78776262	-	Suden_0061	-	hypothetical protein
62	 39.72	+1	66729..67370	+	213	78776263	-	Suden_0062	-	cobalamin (vitamin B12) biosynthesis CbiM protein
63	 33.15	0	67363..67908	+	181	78776264	-	Suden_0063	-	hypothetical protein
64	 37.42	0	67901..68683	+	260	78776265	-	Suden_0064	-	ABC transporter-related protein
65	 40.15	+1	69380..71065	+	561	78776266	-	Suden_0065	-	dihydroxy-acid dehydratase
66	 37.76	+1	71086..72894	+	602	78776267	thrS	Suden_0066	-	threonyl-tRNA synthetase
67	 36.80	0	72891..73409	+	172	78776268	infC	Suden_0067	-	translation initiation factor IF-3
68	 33.33	0	73591..75507	+	638	78776269	-	Suden_0068	-	exo-beta-1 3-glucanase-like
69	 36.61	0	75488..77257	-	589	78776270	-	Suden_0069	-	ABC transporter-related protein
70	 36.75	0	77263..78579	-	438	78776271	-	Suden_0070	-	major facilitator transporter
71	 37.17	0	78689..79288	+	199	78776272	-	Suden_0071	-	Ham1-like protein
72	 31.91	0	79420..80190	-	256	78776273	-	Suden_0072	-	undecaprenol kinase
73	 39.71	+1	80317..81429	+	370	78776274	-	Suden_0073	-	aminotransferase, class V
74	 31.68	0	81430..82278	+	282	78776275	hisZ	Suden_0074	-	ATP phosphoribosyltransferase regulatory subunit
75	 37.78	+1	82325..83584	+	419	78776276	-	Suden_0075	-	adenylosuccinate synthetase
76	 38.13	+1	83666..84040	+	124	78776277	-	Suden_0076	-	hypothetical protein
77	 33.33	0	84037..84549	+	170	78776278	-	Suden_0077	-	PDP protein
78	 31.30	0	84610..86481	+	623	78776279	-	Suden_0078	-	diguanylate cyclase/phosphodiesterase
79	 31.88	0	86546..87097	+	183	78776280	-	Suden_0079	-	hypothetical protein
80	 33.60	0	87099..88244	+	381	78776281	-	Suden_0080	-	carbamoyl phosphate synthase small subunit
81	 38.69	+1	88469..89962	+	497	78776282	-	Suden_0081	-	cytochrome c oxidase cbb3-type, subunit I
82	 37.81	+1	89978..90670	+	230	78776283	-	Suden_0082	-	cbb3-type cytochrome c oxidase subunit II
83	 36.76	0	90680..90883	+	67	78776284	-	Suden_0083	-	cbb3-type cytochrome c oxidase subunit IV
84	 36.15	0	90893..91816	+	307	78776285	-	Suden_0084	-	Cbb3-type cytochrome c oxidase subunit III
85	 34.29	0	91827..92036	+	69	78776286	-	Suden_0085	-	hypothetical protein
86	 31.77	0	92144..92848	+	234	78776287	-	Suden_0086	-	3-dehydroquinate dehydratase
87	 34.91	0	92835..93341	+	168	78776288	-	Suden_0087	-	hypothetical protein
88	 32.99	0	93356..95701	+	781	78776289	-	Suden_0088	-	hypothetical protein
89	 35.04	0	95702..95935	+	77	78776290	-	Suden_0089	-	hypothetical protein
90	 35.69	0	95937..98648	+	903	78776291	-	Suden_0090	-	UvrD/REP helicase
91	 33.92	0	98700..99212	+	170	78776292	-	Suden_0091	-	NLP/P60
92	 33.81	0	99332..99754	+	140	78776293	rplM	Suden_0092	-	50S ribosomal protein L13
93	 42.31	+2	99765..100154	+	129	78776294	rpsI	Suden_0093	-	30S ribosomal protein S9
94	 36.41	0	100269..101765	+	498	78776295	-	Suden_0094	-	extracellular solute-binding protein
95	 31.14	-1	101767..102405	+	212	78776296	-	Suden_0095	-	HAD family hydrolase
96	 35.66	0	102533..103090	+	185	78776297	-	Suden_0096	-	pyruvate flavodoxin oxidoreductase subunit gamma
97	 37.37	0	103101..103496	+	131	78776298	porD	Suden_0097	-	pyruvate flavodoxin oxidoreductase subunit delta
98	 39.22	+1	103496..104719	+	407	78776299	porA	Suden_0098	-	pyruvate flavodoxin oxidoreductase subunit alpha
99	 37.93	+1	104730..105686	+	318	78776300	-	Suden_0099	-	pyruvate flavodoxin oxidoreductase subunit beta
100	 38.27	+1	106659..106982	+	107	78776301	-	Suden_0100	-	nitrate transporter
34.46	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.