version 1.0
Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete sequence - 1..1877212 1752 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 46.58 0 1150..3120 + 656 28899856 - VPA0001 - hypothetical protein 2 43.74 0 3409..3879 - 156 28899857 - VPA0002 - hypothetical protein 3 48.45 0 3876..4808 - 310 28899858 - VPA0003 - peptide ABC transporter, ATP-binding protein 4 47.76 0 4805..5698 - 297 28899859 - VPA0004 - peptide ABC transporter, ATP-binding protein 5 45.27 0 6022..6222 + 66 28899860 - VPA0005 - hypothetical protein 6 49.59 +1 6422..7528 + 368 28899861 - VPA0006 - GTP cyclohydrolase II 7 43.75 0 7497..7592 + 31 28899862 - VPA0007 - hypothetical protein 8 44.97 0 7634..8389 - 251 28899863 - VPA0008 - putative amino acid ABC transporter, periplasmic amino acid-binding portion 9 48.13 0 8458..10356 + 632 28899864 - VPA0009 - putative two-component sensor 10 41.90 0 10458..10667 + 69 28899865 - VPA0010 - hypothetical protein 11 45.19 0 10802..11518 + 238 28899866 - VPA0011 - hypothetical protein 12 47.28 0 11595..12677 - 360 28899867 - VPA0012 - rod shape-determining protein RodA 13 43.56 0 12773..13075 + 100 28899868 - VPA0013 - hypothetical protein 14 49.33 +1 13135..13803 + 222 28899869 - VPA0014 - hypothetical protein 15 49.46 +1 13786..13878 - 30 28899870 - VPA0016 - hypothetical protein 16 51.07 +1 13813..14511 + 232 28899871 - VPA0015 - ABC transporter, ATP-binding protein 17 49.65 +1 14499..15767 + 422 28899872 - VPA0017 - hypothetical protein 18 49.87 +1 15760..16533 + 257 28899873 - VPA0018 - hypothetical protein 19 49.22 0 16566..17906 + 446 28899874 - VPA0019 - hypothetical protein 20 46.80 0 17907..18938 + 343 28899875 - VPA0020 - hypothetical protein 21 46.72 0 18940..19731 + 263 28899876 - VPA0021 - response regulator 22 46.23 0 19809..20444 + 211 28899877 - VPA0022 - hypothetical protein 23 47.68 0 20547..21041 - 164 28899878 - VPA0023 - peptidyl-prolyl cis-trans isomerase B 24 48.86 0 21160..22821 - 553 28899879 - VPA0024 - methyl-accepting chemotaxis protein 25 50.13 +1 23001..23387 - 128 28899880 - VPA0025 - hypothetical protein 26 46.14 0 23389..24216 - 275 28899881 - VPA0026 - hypothetical protein 27 45.93 0 24113..24247 - 44 28899882 - VPA0027 - hypothetical protein 28 46.17 0 24466..25104 + 212 28899883 - VPA0028 - antibiotic acetyltransferase 29 43.26 0 25171..25311 + 46 28899884 - VPA0029 - hypothetical protein 30 46.79 0 25362..25517 + 51 28899885 - VPA0030 - hypothetical protein 31 46.52 0 25649..26884 + 411 28899886 - VPA0031 - sodium/glutamate symporter 32 48.68 0 26983..27816 - 277 28899887 - VPA0032 - hypothetical protein 33 48.37 0 27813..28670 - 285 28899888 - VPA0033 - putative ABC transporter ATP-binding protein 34 46.19 0 28667..29047 - 126 28899889 - VPA0034 - GntR family transcriptional regulator 35 46.62 0 29473..30699 + 408 28899890 - VPA0035 - sodium/glutamate symporter 36 47.06 0 30877..31743 + 288 28899891 - VPA0036 - hypothetical protein 37 42.98 0 31787..31900 + 37 28899892 - VPA0037 - hypothetical protein 38 45.69 0 31871..32671 - 266 28899893 nagB VPA0038 - glucosamine-6-phosphate deaminase 39 45.24 0 33057..33308 + 83 28899894 - VPA0039 - hypothetical protein 40 44.92 0 33460..33813 - 117 28899895 - VPA0040 - hypothetical protein 41 46.11 0 33962..34861 + 299 28899896 - VPA0041 - LysR family transcriptional regulator 42 46.84 0 34981..35676 - 231 28899897 - VPA0042 - hypothetical protein 43 47.97 0 35698..36141 - 147 28899898 - VPA0043 - hypothetical protein 44 39.01 -1 36354..36494 - 46 28899899 - VPA0044 - hypothetical protein 45 49.71 +1 36875..38242 + 455 28899900 - VPA0045 - ada regulatory protein 46 49.69 +1 38239..38721 + 160 28899901 - VPA0046 - methylated-DNA-protein-cysteine S-methyltransferase 47 39.47 -1 38718..38831 - 37 28899902 - VPA0048 - hypothetical protein 48 48.72 0 38821..39639 + 272 28899903 - VPA0047 - hypothetical protein 49 47.62 0 39723..40331 - 202 28899904 - VPA0049 - hypothetical protein 50 46.46 0 40533..40928 + 131 28899905 - VPA0050 - putative inner membrane protein 51 50.79 +1 40956..42221 - 421 28899906 - VPA0051 - NhaD 52 46.69 0 42797..43822 - 341 28899907 - VPA0052 - hypothetical protein 53 44.33 0 44076..44666 + 196 28899908 - VPA0053 - putative transcription regulator protein 54 49.65 +1 44787..45644 + 285 28899909 - VPA0054 - hypothetical protein 55 49.43 +1 45762..48308 - 848 28899910 - VPA0055 - chitinase 56 46.03 0 48678..49181 - 167 28899911 - VPA0056 - hypothetical protein 57 47.72 0 49506..49790 + 94 28899912 - VPA0057 - hypothetical protein 58 48.23 0 49961..50242 + 93 28899913 - VPA0058 - hypothetical protein 59 46.29 0 50262..51419 - 385 28899914 - VPA0059 - GGDEF family protein 60 42.74 0 51666..51782 + 38 28899915 - VPA0060 - lysis protein - phage PP7 61 48.40 0 51995..53335 + 446 28899916 - VPA0061 - hypothetical protein 62 49.23 0 53424..55103 - 559 28899917 - VPA0062 - putative ribosomal large chain pseudouridine synthase A 63 47.83 0 55221..55841 - 206 28899918 - VPA0063 - hypothetical protein 64 48.79 0 55835..56701 - 288 28899919 - VPA0064 - hypothetical protein 65 49.44 +1 56828..57715 + 295 28899920 - VPA0065 - LysR family transcriptional regulator 66 47.76 0 57811..58614 + 267 28899921 - VPA0066 - hypothetical protein 67 48.64 0 58723..59127 - 134 28899922 - VPA0067 - hypothetical protein 68 42.77 0 59137..60228 - 363 28899923 - VPA0068 - GGDEF family protein 69 40.48 -1 60228..60689 - 153 28899924 - VPA0069 - hypothetical protein 70 47.02 0 61135..61974 - 279 28899925 - VPA0070 - putative esterase 71 49.70 +1 62036..63184 - 382 28899926 - VPA0071 - putative alcohol dehydrogenase 72 49.81 +1 63478..64284 + 268 28899927 - VPA0072 - putative N-hydroxyarylamine O-acetyltransferase 73 51.38 +1 64365..65234 + 289 28899928 - VPA0073 - putative transcriptional regulator 74 48.95 0 65235..65945 - 236 28899929 - VPA0074 - putative DNA polymerase III, epsilon subunit 75 49.28 0 65948..67816 - 622 28899930 - VPA0075 - hypothetical protein 76 45.49 0 67900..68697 - 265 28899931 - VPA0076 - putative regulator 77 49.34 +1 68938..69699 + 253 28899932 - VPA0077 - 2-deoxy-D-gluconate 3-dehydrogenase 78 45.14 0 69718..70242 + 174 28899933 - VPA0078 - hypothetical protein 79 45.48 0 70250..70570 + 106 28899934 - VPA0079 - pectin degradation protein 80 47.48 0 70611..71246 + 211 28899935 - VPA0080 - hypothetical protein 81 50.88 +1 71323..72234 + 303 28899936 - VPA0081 - hypothetical protein 82 48.71 0 72333..73262 + 309 28899937 - VPA0082 - putative 2-dehydro-3-deoxygluconokinase 83 48.56 0 73274..73897 + 207 28899938 - VPA0083 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 84 49.94 +1 74083..75822 - 579 28899939 - VPA0084 - putative transporter protein 85 47.35 0 75952..76629 + 225 28899940 - VPA0085 - hypothetical protein 86 51.19 +1 76645..78873 + 742 28899941 - VPA0086 - putative exopolygalacturonate lyase 87 48.84 0 79174..80946 + 590 28899942 - VPA0087 - putative transporter 88 46.19 0 81003..82169 + 388 28899943 - VPA0088 - oligogalacturonate lyase 89 50.39 +1 82256..83029 - 257 28899944 - VPA0089 - putative siderophore utilization protein 90 48.38 0 83209..83793 - 194 28899945 - VPA0090 - hypothetical protein 91 49.21 0 83908..84348 + 146 28899946 - VPA0091 - AsnC family transcriptional regulator 92 49.45 +1 84564..85742 + 392 28899947 - VPA0092 - spindolin-related protein 93 49.11 0 85859..86479 - 206 28899948 - VPA0093 - hypothetical protein 94 47.76 0 86518..86829 - 103 28899949 - VPA0094 - hypothetical protein 95 45.31 0 86839..87489 - 216 28899950 - VPA0095 - hypothetical protein 96 43.57 0 87986..88630 + 214 28899951 - VPA0096 - outer membrane protein W 97 49.71 +1 88863..89888 + 341 28899952 - VPA0097 - putative secretion protein 98 48.83 0 89885..91375 + 496 28899953 - VPA0098 - putative efflux pump protein 99 46.34 0 91472..91717 - 81 28899954 - VPA0099 - hypothetical protein 100 47.41 0 91898..93034 + 378 28899955 - VPA0100 - hypothetical protein 45.47 MEAN 3.83 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.