IslandPath Analysis: Xanthomonas oryzae pv. oryzae MAFF 311018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.74   STD DEV: 3.69
Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome - 1..4940217
4372 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.64	0	41..1369	+	442	84621658	dnaA	XOO_0001	-	chromosomal replication initiation protein
2	 61.76	0	1647..2747	+	366	84621659	-	XOO_0002	-	DNA polymerase III subunit beta
3	 64.00	0	3999..5087	+	362	84621660	recF	XOO_0003	-	recombination protein F
4	 64.34	0	5219..7663	+	814	84621661	gyrB	XOO_0004	-	DNA gyrase subunit B
5	 65.71	0	7731..8567	+	278	84621662	-	XOO_0005	-	hypothetical protein
6	 64.06	0	8754..9560	+	268	84621663	-	XOO_0006	-	hypothetical protein
7	 59.80	-1	9837..11030	+	397	84621664	-	XOO_0007	-	hypothetical protein
8	 63.84	0	11184..11855	+	223	84621665	-	XOO_0008	-	tonB protein
9	 64.30	0	11940..12701	+	253	84621666	-	XOO_0009	-	biopolymer transport ExbB protein
10	 59.34	-1	12748..13170	+	140	84621667	-	XOO_0010	-	biopolymer transport ExbD1 protein
11	 59.66	-1	13174..13587	+	137	84621668	-	XOO_0011	-	biopolymer transport ExbD2 protein
12	 64.97	0	13883..14650	-	255	84621669	-	XOO_0012	-	pyridoxal phosphate biosynthetic protein PdxJ
13	 66.03	0	14661..14972	-	103	84621670	-	XOO_0013	-	hypothetical protein
14	 66.67	0	15005..16465	-	486	84621671	-	XOO_0014	-	cardiolipin synthetase
15	 57.58	-1	16475..16870	-	131	84621672	-	XOO_0015	-	hypothetical protein
16	 65.08	0	17112..18122	-	336	84621673	-	XOO_0016	-	fructose-1,6-bisphosphatase
17	 65.50	0	18394..19596	-	400	84621674	-	XOO_0017	-	aromatic amino acid aminotransferase
18	 68.12	+1	19738..21876	+	712	84621675	-	XOO_0018	-	iron transporter
19	 66.21	0	21940..22380	+	146	84621676	-	XOO_0019	-	hypothetical protein
20	 66.30	0	22497..23042	+	181	84621677	-	XOO_0020	-	hypothetical protein
21	 62.28	0	23156..24136	-	326	84621678	-	XOO_0021	-	ISXoo7 transposase
22	 66.84	0	24184..25350	-	388	84621679	lldD	XOO_0022	-	L-lactate dehydrogenase
23	 66.31	0	25497..26063	-	188	84621680	-	XOO_0023	-	hypothetical protein
24	 67.94	+1	26207..26911	-	234	84621681	-	XOO_0024	-	hypothetical protein
25	 66.08	0	27062..27400	-	112	84621682	-	XOO_0025	-	hypotethical protein
26	 63.85	0	27538..28746	+	402	84621683	-	XOO_0026	-	trans-2-enoyl-CoA reductase
27	 67.84	+1	29374..30396	-	340	84621684	-	XOO_0027	-	2-keto-3-deoxygluconate kinase
28	 63.48	0	30683..30964	+	93	84621685	-	XOO_0028	-	hypothetical protein
29	 61.30	0	31219..32187	+	322	84621686	-	XOO_0029	-	ISXo1 transposase
30	 49.43	-2	32675..33811	+	378	84621687	-	XOO_0030	-	hypothetical protein
31	 50.48	-2	33793..34515	+	240	84621688	-	XOO_0031	-	ATP-binding protein of ABC transporter
32	 62.75	0	35117..36493	-	458	84621689	-	XOO_0032	-	ISXoo4 transposase
33	 64.82	0	36450..37697	-	415	84621690	-	XOO_0033	-	ISXoo5 transposase
34	 65.53	0	37823..38086	+	87	84621691	-	XOO_0034	-	hypothetical protein
35	 63.11	0	38132..38947	+	271	84621692	-	XOO_0035	-	ISXo5 transposase
36	 64.43	0	39096..39452	+	118	84621693	-	XOO_0036	-	hypothetical protein
37	 53.50	-2	39690..40304	-	204	84621694	-	XOO_0037	-	hypothetical protein
38	 62.08	0	40479..41459	-	326	84621695	-	XOO_0038	-	ISXoo7 transposase
39	 63.89	0	41819..42070	+	83	84621696	-	XOO_0039	-	hypothetical protein
40	 68.76	+1	42078..43367	+	429	84621697	-	XOO_0040	-	ATP-dependent RNA helicase
41	 62.80	0	43807..44142	-	111	84621698	-	XOO_0041	-	hypothetical protein
42	 67.39	0	44269..44406	-	45	84621699	-	XOO_0042	-	hypothetical protein
43	 61.81	0	44417..44848	-	143	84621700	-	XOO_0043	-	VirK protein
44	 68.55	+1	45197..46633	-	478	84621701	-	XOO_0044	-	hypothetical protein
45	 65.57	0	46712..47260	-	182	84621702	-	XOO_0045	-	hypothetical protein
46	 60.61	0	47426..47722	-	98	84621703	-	XOO_0046	-	hypothetical protein
47	 67.05	0	47924..48184	-	86	84621704	-	XOO_0047	-	hypothetical protein
48	 54.80	-2	48201..48596	-	131	84621705	-	XOO_0048	-	hypothetical protein
49	 63.48	0	49351..50574	-	407	84621706	-	XOO_0049	-	ISXoo8 transposase
50	 61.74	0	50590..51015	-	141	84621707	-	XOO_0050	-	ISXo8 transposase
51	 58.54	-1	51086..51442	+	118	84621708	-	XOO_0051	-	ISXo3 transposase orfA
52	 58.91	-1	51408..51884	+	158	84621709	-	XOO_0052	-	ISXo3 transposase orfB
53	 61.73	0	51871..52701	-	276	84621710	-	XOO_0053	-	ISXo8 transposase
54	 55.35	-2	52689..53501	-	270	84621711	-	XOO_0054	-	hypothetical protein
55	 63.06	0	53566..54564	+	332	84621712	-	XOO_0055	-	ISXo5 transposase
56	 62.95	0	54983..56302	+	439	84621713	-	XOO_0056	-	ISXo8 transposase
57	 55.59	-2	56420..57466	+	348	84621714	-	XOO_0057	-	methylamine utilization protein precursor
58	 56.02	-2	57607..58104	-	165	84621715	-	XOO_0058	-	hypothetical protein
59	 65.35	0	58268..58948	-	226	84621716	-	XOO_0059	-	hypothetical protein
60	 63.62	0	58917..61079	-	720	84621717	-	XOO_0060	-	glycogen debranching enzyme
61	 68.82	+1	61194..61379	-	61	84621718	-	XOO_0061	-	hypothetical protein
62	 66.97	0	61402..64005	-	867	84621719	-	XOO_0062	-	maltooligosyltrehalose synthase
63	 67.74	+1	64002..65951	-	649	84621720	-	XOO_0063	-	4-alpha-glucanotransferase
64	 65.76	0	65948..67705	-	585	84621721	-	XOO_0064	-	maltooligosyltrehalose trehalohydrolase
65	 66.98	0	67708..69942	-	744	84621722	-	XOO_0065	-	glycogen branching enzyme
66	 67.45	+1	69939..71468	-	509	84621723	glgA	XOO_0066	-	glycogen synthase
67	 66.91	0	71996..73624	+	542	84621724	-	XOO_0067	-	hypothetical protein
68	 63.00	0	73621..74985	-	454	84621725	-	XOO_0068	-	hypothetical protein
69	 65.71	0	75178..76119	-	313	84621726	-	XOO_0069	-	hypothetical protein
70	 64.12	0	76360..78084	+	574	84621727	-	XOO_0070	-	ABC transporter substrate binding protein
71	 56.49	-1	78091..78375	-	94	84621728	-	XOO_0071	-	ISXoo11 transposase
72	 54.81	-2	78435..78881	-	148	84621729	-	XOO_0072	-	ISXoo12 transposase
73	 59.39	-1	78914..79174	+	86	84621730	-	XOO_0073	-	hypothetical protein
74	 64.07	0	79193..81658	-	821	84621731	-	XOO_0074	-	hypothetical protein
75	 66.37	0	81936..82277	+	113	84621732	-	XOO_0075	-	hypothetical protein
76	 64.71	0	82627..83394	+	255	84621733	-	XOO_0076	-	ISXoo2 transposase
77	 60.15	0	83720..83980	-	86	84621734	-	XOO_0077	-	hypothetical protein
78	 63.64	0	84159..84422	-	87	84621735	-	XOO_0078	-	hypothetical protein
79	 62.06	0	85028..86047	+	339	84621736	-	XOO_0079	-	hypothetical protein
80	 55.70	-2	86511..86984	-	157	84621737	-	XOO_0080	-	Hpa2-like protein
81	 60.48	0	87450..87869	+	139	84621738	-	XOO_0081	-	Hpa1-like protein
82	 62.54	0	88608..90425	-	605	84621739	-	XOO_0082	-	HrcC protein
83	 61.49	0	90508..91338	-	276	84621740	-	XOO_0083	-	HrcT protein
84	 65.69	0	91335..91844	-	169	84621741	-	XOO_0084	-	HrpB7 protein
85	 65.54	0	91837..93165	-	442	84621742	-	XOO_0085	-	type III secretion system ATPase
86	 68.80	+1	93155..93856	-	233	84621743	-	XOO_0086	-	type III secretion system protein HrpB
87	 67.46	+1	93841..94470	-	209	84621744	-	XOO_0087	-	HrpB4 protein
88	 61.42	0	94478..95239	-	253	84621745	-	XOO_0088	-	HrcJ protein
89	 61.07	0	95241..95633	-	130	84621746	-	XOO_0089	-	HrpB2 protein
90	 62.72	0	95667..96122	-	151	84621747	-	XOO_0090	-	HrpB1 protein
91	 58.89	-1	96337..97416	+	359	84621748	-	XOO_0091	-	type III secretion system protein HrcU
92	 61.61	0	97410..99347	+	645	84621749	-	XOO_0092	-	HrcV protein
93	 63.92	0	99371..99988	+	205	84621750	-	XOO_0093	-	HpaP protein
94	 63.39	0	100120..101034	+	304	84621751	-	XOO_0094	-	HrcQ protein
95	 58.76	-1	101021..101665	+	214	84621752	-	XOO_0095	-	type III secretion system protein
96	 62.45	0	101670..101930	+	86	84621753	-	XOO_0096	-	HrcS protein
97	 63.41	0	101927..102754	+	275	84621754	-	XOO_0097	-	HpaA protein
98	 62.41	0	102751..103689	+	312	84621755	-	XOO_0098	-	HrpD5 protein
99	 60.49	0	103699..103941	+	80	84621756	-	XOO_0099	-	HrpD6 protein
100	 53.19	-2	104022..104303	+	93	84621757	-	XOO_0100	-	HrpE1 protein
63.74	MEAN

3.69	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.