IslandPath Analysis: Leifsonia xyli subsp. xyli str. CTCB07



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.97   STD DEV: 3.84
Leifsonia xyli subsp. xyli str. CTCB07, complete genome - 1..2584158
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.06	-2	225..1646	+	473	50953926	dnaA	Lxx00010	-	chromosomal replication initiator protein
2	 60.21	-2	2083..3228	+	381	50953927	dnaN	Lxx00020	-	DNA polymerase III subunit beta
3	 62.16	-1	3266..4153	+	295	50953928	gnd	Lxx00030	-	6-phosphogluconate dehydrogenase-like protein
4	 63.47	-1	4160..5317	+	385	50953929	recF	Lxx00040	-	recombination protein F
5	 67.30	0	5314..5790	+	158	50953930	-	Lxx00050	-	hypothetical protein
6	 62.75	-1	5914..7905	+	663	50953931	gyrB	Lxx00060	-	DNA gyrase subunit B
7	 63.72	-1	7949..10525	+	858	50953932	gyrA	Lxx00070	-	DNA gyrase subunit A
8	 61.35	-1	10515..10928	+	137	50953933	-	Lxx00080	-	integral membrane protein
9	 65.74	0	13624..14487	-	287	50953934	mutM	Lxx00140	-	formamidopyrimidine-DNA glycosylase
10	 65.74	0	14528..14959	+	143	50953935	-	Lxx00130	-	MutT-like domain-containing protein
11	 70.30	0	15163..15465	-	100	50953936	-	Lxx00150	-	hypothetical protein
12	 63.70	-1	15843..16382	+	179	50953937	ppiB	Lxx00160	-	peptidyl-prolyl cis-trans isomerase
13	 65.85	0	16406..17263	+	285	50953938	yggP	Lxx00170	-	rhomboid family membrane protein
14	 62.45	-1	17482..17742	-	86	50953939	whiP	Lxx00180	-	hypothetical protein
15	 63.60	-1	17919..18668	+	249	50953940	-	Lxx00190	-	membrane protein
16	 64.95	0	18828..19466	+	212	50953941	trpG	Lxx00200	-	anthranilate synthase component II
17	 66.49	0	19497..21194	-	565	50953942	pknB	Lxx00210	-	serine/threonine kinase
18	 67.83	0	21267..22988	-	573	50953943	pknA	Lxx00220	-	serine/threonine kinase
19	 64.14	0	22985..24406	-	473	50953944	-	Lxx00230	-	penicillin binding protein transpeptidase domain-containing protein
20	 65.58	0	24441..25820	-	459	50953945	ftsW	Lxx00240	-	cell division membrane protein
21	 67.39	0	25822..27066	-	414	50953946	-	Lxx00250	-	protein phosphatase
22	 68.46	0	27070..27627	-	185	50953947	-	Lxx00260	-	secreted protein
23	 65.13	0	27624..28337	-	237	50953948	-	Lxx00270	-	hypothetical protein
24	 62.54	-1	29067..29405	+	112	50953949	-	Lxx00290	-	hypothetical protein
25	 67.50	0	30026..30745	-	239	50953950	aroE	Lxx00310	-	shikimate 5-dehydrogenase
26	 61.95	-1	31125..32672	+	515	50953951	-	Lxx00320	-	multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter
27	 65.78	0	32675..34024	+	449	50953952	araH	Lxx00330	-	L-arabinose ABC transporter, permease protein
28	 64.43	0	34092..35162	+	356	50953953	-	Lxx00340	-	multiple sugar-binding periplasmic receptor
29	 58.61	-2	37296..38450	+	384	50953954	-	Lxx00370	-	DNA-binding helix-turn-helix protein
30	 57.66	-2	39767..40810	+	347	50953955	-	Lxx00380	-	secreted hydrolase
31	 63.96	-1	41320..41652	-	110	50953956	5	Lxx00390	-	hypothetical protein
32	 64.03	-1	41660..42607	-	315	50953957	lysL	Lxx00400	-	phage-related lysozyme
33	 64.04	-1	43317..43583	-	88	50953958	-	Lxx00410	-	hypothetical protein
34	 67.32	0	43717..44178	+	153	50953959	tnp	Lxx00420	-	transposase, ISlxx4
35	 57.26	-2	46023..46373	+	116	50953960	mut	Lxx00440	-	MutT-like domain-containing protein
36	 64.14	0	46604..47908	-	434	50953961	-	Lxx00450	-	phage-related integrase
37	 68.21	0	48277..48990	-	237	50953962	-	Lxx00460	-	GntR family transcriptional regulator
38	 68.54	0	49110..49751	+	213	50953963	-	Lxx00470	-	GntR family transcriptional regulator
39	 71.87	+1	49911..51044	-	377	50953964	-	Lxx00490	-	serine protease
40	 72.79	+1	51177..51731	-	184	50953965	-	Lxx00500	-	hypothetical protein
41	 69.47	0	51946..53229	+	427	50953966	-	Lxx00510	-	ROK family transcriptional regulator
42	 67.10	0	54720..55652	+	310	50953967	-	Lxx00540	-	ABC transporter, permease protein
43	 63.32	-1	55649..56485	+	278	50953968	-	Lxx00550	-	ABC transporter, permease protein
44	 63.37	-1	57113..58324	+	403	50953969	tnp	Lxx00570	-	transposase, ISlxx5
45	 72.85	+1	60277..60648	+	123	50953970	-	Lxx00600	-	hypothetical protein
46	 72.49	+1	61552..62598	+	348	50953971	kdgK	Lxx00610	-	2-dehydro-3-deoxygluconokinase
47	 71.48	0	62595..63383	+	262	50953972	-	Lxx00620	-	IclR family transcriptional regulator
48	 67.65	0	63395..63799	+	134	50953973	-	Lxx00630	-	protein synthesis inhibitor
49	 70.87	0	65549..66595	+	348	50953974	-	Lxx00640	-	oxidoreductase
50	 64.96	0	66911..67027	+	38	50953975	-	Lxx00660	-	hypothetical protein
51	 67.52	0	67113..67583	+	156	50953976	-	Lxx00670	-	hypothetical protein
52	 70.77	0	67552..67965	-	137	50953977	crcB	Lxx00680	-	integral membrane protein
53	 69.86	0	67962..68399	-	145	50953978	crcB	Lxx00690	-	integral membrane protein
54	 71.64	0	68492..69034	-	180	50953979	-	Lxx00710	-	hypothetical protein
55	 69.08	0	69024..69770	+	248	50953980	-	Lxx00700	-	hypothetical protein
56	 70.77	0	69767..70813	+	348	50953981	-	Lxx00730	-	membrane protein
57	 70.64	0	70810..71991	-	393	50953982	-	Lxx00740	-	hypothetical protein
58	 72.18	+1	72235..73395	-	386	50953983	-	Lxx00750	-	two-component system, sensor protein
59	 70.19	0	73920..74543	-	207	50953984	-	Lxx00760	-	two-component system, response regulator
60	 72.14	+1	75783..76934	-	383	50953985	mtlD	Lxx00800	-	mannitol-1-phosphate 5-dehydrogenase
61	 67.81	0	76947..77384	-	145	50953986	-	Lxx00810	-	PTS system, mannitol-specific enzyme II, A component
62	 66.34	0	77381..78895	-	504	50953987	EIIBC-Mtl	Lxx00820	-	PTS system, mannitol-specific IIBC component
63	 72.31	+1	78892..80538	-	548	50953988	ptsI	Lxx00830	-	PTS system, enzyme I
64	 68.16	0	80598..80864	-	88	50953989	ptsH	Lxx00840	-	phosphocarrier protein HPr
65	 70.03	0	80857..81213	-	118	50953990	-	Lxx00850	-	PTS system, IIB component
66	 71.95	+1	84065..85180	+	371	50953991	-	Lxx00880	-	acetyltransferase
67	 67.04	0	85621..87519	+	632	50953992	-	Lxx00900	-	BigG family transcription antiterminator
68	 72.10	+1	87549..88247	-	232	50953993	-	Lxx00910	-	HAD superfamily hydrolase
69	 72.38	+1	88285..88704	-	139	50953994	-	Lxx00920	-	hypothetical protein
70	 68.68	0	88704..89399	-	231	50953995	-	Lxx00930	-	hypothetical protein
71	 72.16	+1	89414..90487	+	357	50953996	-	Lxx00940	-	secreted protein
72	 65.24	0	90531..91160	-	209	50953997	-	Lxx00950	-	hypothetical protein
73	 74.24	+1	92167..93552	-	461	50953998	dinF	Lxx00960	-	DNA-damage-inducible protein F
74	 72.54	+1	93566..94297	+	243	50953999	-	Lxx00970	-	hypothetical protein
75	 71.70	0	94294..94611	+	105	50954000	-	Lxx00980	-	hypothetical protein
76	 64.89	0	95288..95512	+	74	50954001	-	Lxx00990	-	hypothetical protein
77	 67.00	0	95597..96193	+	198	50954002	-	Lxx01000	-	hypothetical protein
78	 67.74	0	96210..98165	+	651	50954003	-	Lxx01010	-	metallopeptidase
79	 69.53	0	98366..99202	+	278	50954004	-	Lxx01020	-	beta-lactamase related protein
80	 66.24	0	99376..100767	-	463	50954005	glyS	Lxx01030	-	glycyl-tRNA synthetase
81	 71.82	+1	100844..102142	-	432	50954006	hemA	Lxx01050	-	glutamyl-tRNA reductase
82	 72.05	+1	102252..103385	+	377	50954007	hemE	Lxx01040	-	uroporphyrinogen decarboxylase
83	 72.23	+1	103382..105214	+	610	50954008	hemG	Lxx01060	-	protoporphyrinogen oxidase
84	 73.61	+1	105650..105865	+	71	50954009	-	Lxx01080	-	hypothetical protein
85	 69.74	0	106682..107851	+	389	50954010	hemH	Lxx01090	-	ferrochelatase
86	 74.95	+1	107848..108837	+	329	50954011	hemC	Lxx01100	-	porphobilinogen deaminase
87	 72.41	+1	108834..109616	+	260	50954012	hemD	Lxx01110	-	uroporphyrinogen-III synthase
88	 71.87	+1	109644..110624	+	326	50954013	hemB	Lxx01120	-	delta-aminolevulinic acid dehydratase
89	 72.77	+1	110645..111988	+	447	50954014	hemL	Lxx01130	-	glutamate-1-semialdehyde 2,1-aminomutase
90	 67.32	0	112143..112751	+	202	50954015	-	Lxx01140	-	hypothetical protein
91	 67.93	0	113470..114183	+	237	50954016	-	Lxx01150	-	hypothetical protein
92	 61.97	-1	114224..114649	+	141	50954017	-	Lxx01160	-	hypothetical protein
93	 68.77	0	116688..117068	-	126	50954018	-	Lxx01180	-	membrane protein
94	 70.97	0	117132..118154	-	340	50954019	adhT	Lxx01190	-	alcohol dehydrogenase
95	 66.98	0	118621..119262	+	213	50954020	-	Lxx01200	-	hypothetical protein
96	 77.08	+2	119326..119421	+	31	50954021	-	Lxx01210	-	hypothetical protein
97	 69.79	0	119421..119900	+	159	50954022	-	Lxx01220	-	hypothetical protein
98	 69.75	0	120874..121749	+	291	50954023	-	Lxx01230	-	glycosyltransferase
99	 70.76	0	121753..122289	+	178	50954024	-	Lxx01250	-	hypothetical protein
100	 68.00	0	123941..124840	+	299	50954025	prpB	Lxx01280	-	phosphonomutase
67.97	MEAN

3.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.