IslandPath Analysis: Mycobacterium sp. KMS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.56   STD DEV: 3.23
Mycobacterium sp. KMS, complete genome - 1..5737227
5460 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 70.39	0	98..1090	-	330	119866058	-	Mkms_0001	-	chromosome segregation DNA-binding protein
2	 67.66	0	1118..2125	-	335	119866059	-	Mkms_0002	-	chromosome segregation ATPase
3	 71.24	0	2122..2799	-	225	119866060	-	Mkms_0003	-	methyltransferase GidB
4	 69.41	0	2860..3405	-	181	119866061	-	Mkms_0004	-	single-stranded nucleic acid binding R3H domain-containing protein
5	 66.03	0	3441..4544	-	367	119866062	-	Mkms_0005	-	putative inner membrane protein translocase component YidC
6	 67.58	0	4537..4863	-	108	119866063	-	Mkms_0006	-	hypothetical protein
7	 68.07	0	4860..5216	-	118	119866064	rnpA	Mkms_0007	-	ribonuclease P
8	 70.83	0	5238..5381	-	47	119866065	rpmH	Mkms_0008	-	50S ribosomal protein L34
9	 65.39	0	5935..7422	+	495	119866066	dnaA	Mkms_0009	-	chromosomal replication initiation protein
10	 70.34	0	7984..9180	+	398	119866067	-	Mkms_0010	-	DNA polymerase III subunit beta
11	 68.68	0	9210..10103	+	297	119866068	-	Mkms_0011	-	6-phosphogluconate dehydrogenase-like protein
12	 69.90	0	10156..11298	+	380	119866069	recF	Mkms_0012	-	recombination protein F
13	 72.08	+1	11295..11867	+	190	119866070	-	Mkms_0013	-	hypothetical protein
14	 64.00	-1	12088..14115	+	675	119866071	gyrB	Mkms_0014	-	DNA gyrase subunit B
15	 64.71	-1	14149..17922	+	1257	119866072	-	Mkms_0015	-	DNA gyrase subunit A
16	 74.11	+1	17940..18812	+	290	119866073	-	Mkms_0016	-	hypothetical protein
17	 73.19	+1	19239..19652	-	137	119866074	-	Mkms_0017	-	hypothetical protein
18	 66.10	0	19750..20277	+	175	119866075	-	Mkms_0018	-	peptidylprolyl isomerase
19	 64.52	-1	20291..20710	-	139	119866076	-	Mkms_0019	-	hypothetical protein
20	 63.51	-1	20866..21150	-	94	119866077	-	Mkms_0020	-	putative septation inhibitor protein
21	 73.36	+1	21216..22052	+	278	119866078	-	Mkms_0021	-	hypothetical protein
22	 69.48	0	22076..22750	+	224	119866079	-	Mkms_0022	-	para-aminobenzoate synthase component II
23	 69.39	0	22728..24602	-	624	119866080	-	Mkms_0023	-	serine/threonine protein kinase
24	 70.72	0	24599..25930	-	443	119866081	-	Mkms_0024	-	protein kinase
25	 68.97	0	25962..27437	-	491	119866082	-	Mkms_0025	-	peptidoglycan glycosyltransferase
26	 66.81	0	27434..28846	-	470	119866083	-	Mkms_0026	-	cell cycle protein
27	 70.39	0	28843..30318	-	491	119866084	-	Mkms_0027	-	protein phosphatase 2C domain-containing protein
28	 67.74	0	30315..30779	-	154	119866085	-	Mkms_0028	-	FHA domain-containing protein
29	 70.57	0	30923..32332	-	469	119866086	-	Mkms_0029	-	FHA domain-containing protein
30	 59.74	-2	32968..34455	+	495	119866087	-	Mkms_0030	-	N-6 DNA methylase
31	 58.01	-2	34576..35811	+	411	119866088	-	Mkms_0031	-	type I restriction-modification system specificity subunit
32	 60.11	-2	35811..39137	+	1108	119866089	-	Mkms_0032	-	HsdR family type I site-specific deoxyribonuclease
33	 53.59	-2	39713..41524	-	603	119866090	-	Mkms_0033	-	hypothetical protein
34	 60.84	-2	41810..42478	+	222	119866091	-	Mkms_0034	-	uracil-DNA glycosylase superfamily protein
35	 63.86	-1	42952..43236	+	94	119866092	-	Mkms_0035	-	hypothetical protein
36	 62.14	-1	43570..43812	+	80	119866093	-	Mkms_0036	-	hypothetical protein
37	 65.44	0	43857..44183	+	108	119866094	-	Mkms_0037	-	hypothetical protein
38	 62.42	-1	44255..44914	+	219	119866095	-	Mkms_0038	-	hypothetical protein
39	 66.43	0	45760..47007	-	415	119866096	-	Mkms_0039	-	transposase, mutator type
40	 66.76	0	47206..48255	+	349	119866097	-	Mkms_0040	-	hypothetical protein
41	 65.09	-1	48259..50037	+	592	119866098	-	Mkms_0041	-	hypothetical protein
42	 63.33	-1	50440..51459	-	339	119866099	-	Mkms_0042	-	aldo/keto reductase
43	 62.87	-1	51544..52149	+	201	119866100	-	Mkms_0043	-	TetR family transcriptional regulator
44	 66.16	0	52293..53282	+	329	119866101	-	Mkms_0044	-	hypothetical protein
45	 63.85	-1	53307..54335	-	342	119866102	-	Mkms_0045	-	hypothetical protein
46	 69.23	0	54440..56311	-	623	119866103	-	Mkms_0046	-	hypothetical protein
47	 70.14	0	56642..57217	-	191	119866104	-	Mkms_0047	-	TetR family transcriptional regulator
48	 71.13	0	57291..58298	+	335	119866105	-	Mkms_0048	-	NAD-dependent epimerase/dehydratase
49	 71.76	0	58298..60514	+	738	119866106	-	Mkms_0049	-	acyl-CoA dehydrogenase domain-containing protein
50	 67.82	0	60528..61736	+	402	119866107	-	Mkms_0050	-	hypothetical protein
51	 67.15	0	61741..62157	+	138	119866108	-	Mkms_0051	-	hypothetical protein
52	 70.10	0	62154..62561	+	135	119866109	-	Mkms_0052	-	hypothetical protein
53	 70.97	0	62558..63370	+	270	119866110	-	Mkms_0053	-	short-chain dehydrogenase/reductase SDR
54	 70.78	0	63394..64098	-	234	119866111	-	Mkms_0054	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
55	 70.37	0	64131..64535	-	134	119866112	-	Mkms_0055	-	DNA binding domain-containing protein
56	 71.91	+1	64727..66727	+	666	119866113	-	Mkms_0056	-	hypothetical protein
57	 73.01	+1	66724..69213	+	829	119866114	-	Mkms_0057	-	hypothetical protein
58	 69.43	0	69215..70372	+	385	119866115	-	Mkms_0058	-	hypothetical protein
59	 72.09	+1	70475..71506	+	343	119866116	-	Mkms_0059	-	FHA domain-containing protein
60	 64.71	-1	71567..72076	+	169	119866117	-	Mkms_0060	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
61	 68.54	0	72073..72552	+	159	119866118	-	Mkms_0061	-	hypothetical protein
62	 72.68	+1	72533..73363	-	276	119866119	-	Mkms_0062	-	hypothetical protein
63	 66.99	0	73415..73720	-	101	119866120	-	Mkms_0063	-	hypothetical protein
64	 64.85	-1	73733..74227	-	164	119866121	-	Mkms_0064	-	hypothetical protein
65	 69.23	0	74282..74632	+	116	119866122	-	Mkms_0065	-	hypothetical protein
66	 69.73	0	74766..75059	-	97	119866123	-	Mkms_0066	-	transcription factor WhiB
67	 73.09	+1	75418..76149	+	243	119866124	-	Mkms_0067	-	hypothetical protein
68	 73.83	+1	76270..77232	+	320	119866125	-	Mkms_0068	-	hypothetical protein
69	 75.00	+1	77302..78297	-	331	119866126	-	Mkms_0069	-	FHA domain-containing protein
70	 68.02	0	78415..79374	-	319	119866127	-	Mkms_0070	-	hypothetical protein
71	 69.49	0	80246..81094	+	282	119866128	-	Mkms_0071	-	hypothetical protein
72	 68.44	0	81107..81613	+	168	119866129	-	Mkms_0072	-	hypothetical protein
73	 68.06	0	81606..83327	+	573	119866130	-	Mkms_0073	-	ATPase central domain-containing protein
74	 68.70	0	83331..84806	+	491	119866131	-	Mkms_0074	-	hypothetical protein
75	 67.52	0	84820..87057	+	745	119866132	-	Mkms_0075	-	cell divisionFtsK/SpoIIIE
76	 68.44	0	87054..88856	+	600	119866133	-	Mkms_0076	-	cell divisionFtsK/SpoIIIE
77	 72.45	+1	89004..89297	+	97	119866134	-	Mkms_0077	-	PE domain-containing protein
78	 71.17	0	89348..90679	+	443	119866135	-	Mkms_0078	-	PPE protein
79	 66.67	0	90773..91072	+	99	119866136	-	Mkms_0079	-	10 kDa culture filtrate antigen LHP (CFP10)
80	 69.44	0	91103..91390	+	95	119866137	-	Mkms_0080	-	6 kDa early secretory antigenic target EsaT6 (EsaT-6)
81	 71.01	0	91496..92923	+	475	119866138	-	Mkms_0081	-	hypothetical protein
82	 70.08	0	92986..94449	+	487	119866139	-	Mkms_0082	-	hypothetical protein
83	 76.92	+2	94459..94770	+	103	119866140	-	Mkms_0083	-	hypothetical protein
84	 66.04	0	94776..95096	-	106	119866141	-	Mkms_0084	-	hypothetical protein
85	 74.22	+1	95105..96706	-	533	119866142	-	Mkms_0085	-	hypothetical protein
86	 68.88	0	96757..98154	-	465	119866143	-	Mkms_0086	-	hypothetical protein
87	 70.23	0	98151..99497	-	448	119866144	-	Mkms_0087	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
88	 74.42	+1	99688..99945	-	85	119866145	-	Mkms_0088	-	phosphotransferase system, phosphocarrier protein HPr
89	 70.93	0	99974..101989	-	671	119866146	-	Mkms_0089	-	PTS system, fructose subfamily, IIC subunit
90	 75.97	+2	102010..102987	-	325	119866147	-	Mkms_0090	-	ribokinase-like domain-containing protein
91	 71.74	0	102984..103751	-	255	119866148	-	Mkms_0091	-	DeoR family transcriptional regulator
92	 74.25	+1	103794..105548	+	584	119866149	-	Mkms_0092	-	phosphoenolpyruvate--protein phosphotransferase
93	 70.82	0	105585..106571	+	328	119866150	-	Mkms_0093	-	pirin domain-containing protein
94	 72.93	+1	106574..108730	-	718	119866151	-	Mkms_0094	-	membrane protein-like protein
95	 67.15	0	108762..109379	-	205	119866152	-	Mkms_0095	-	TetR family transcriptional regulator
96	 64.31	-1	109494..110129	+	211	119866153	-	Mkms_0096	-	TetR family transcriptional regulator
97	 70.07	0	110238..111176	+	312	119866154	-	Mkms_0097	-	putative methyltransferase
98	 72.10	+1	111173..111964	+	263	119866155	-	Mkms_0098	-	putative methyltransferase
99	 66.45	0	112036..113448	+	470	119866156	-	Mkms_0099	-	aldehyde dehydrogenase
100	 66.90	0	113523..114386	+	287	119866157	-	Mkms_0100	-	short-chain dehydrogenase/reductase SDR
68.56	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.