IslandPath Analysis: Pseudoalteromonas haloplanktis TAC125



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.39   STD DEV: 3.39
Pseudoalteromonas haloplanktis TAC125 chromosome I, complete genome - 1..3214944
2939 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.67	0	118..1542	+	474	77358983	dnaA	PSHAa0001	-	DNA replication initiator
2	 39.49	0	1556..2659	+	367	77358984	dnaN	PSHAa0002	-	DNA polymerase III subunit beta
3	 36.80	-1	2675..3769	+	364	77358985	recF	PSHAa0003	-	gap repair protein
4	 40.01	0	3782..6208	+	808	77358986	gyrB	PSHAa0004	-	DNA gyrase subunit B
5	 45.18	+1	6349..7251	+	300	77358987	glyQ	PSHAa0005	-	glycyl-tRNA synthetase subunit alpha
6	 42.37	0	7254..9323	+	689	77358988	glyS	PSHAa0006	-	glycyl-tRNA synthetase subunit beta
7	 39.07	0	9419..9871	+	150	77358989	-	PSHAa0007	-	hypothetical protein
8	 31.03	-2	9961..10914	+	317	77358990	-	PSHAa0008	-	hypothetical protein
9	 47.50	+2	10927..11166	-	79	77358991	sirA	PSHAa0009	-	small ubiquitous RNA-binding protein
10	 45.90	+1	11474..12643	-	389	77358992	fadA	PSHAa0010	-	3-ketoacyl-CoA thiolase
11	 41.48	0	12648..14807	-	719	77358993	fadB	PSHAa0011	-	multifunctional fatty acid oxidation complex subunit alpha
12	 41.44	0	15000..16886	+	628	77358994	slt	PSHAa0012	-	lytic murein transglycosylase
13	 41.19	0	17005..18327	+	440	77358995	pepQ	PSHAa0013	-	proline dipeptidase
14	 39.25	0	18379..19020	+	213	77358996	-	PSHAa0014	-	GTP-binding protein
15	 43.04	0	19070..20521	+	483	77358997	trkH	PSHAa0015	-	potassium transport protein
16	 40.18	0	20561..21232	+	223	77358998	-	PSHAa0016	-	hypothetical protein
17	 38.03	0	21700..21912	+	70	77358999	-	PSHAa0017	-	calmodulin
18	 41.31	0	22062..22274	+	70	77359000	-	PSHAa0018	-	calmodulin
19	 38.03	0	22343..22555	+	70	77359001	-	PSHAa0019	-	calmodulin
20	 43.21	0	22631..24007	-	458	77359002	trkA	PSHAa0020	-	potassium transporter peripheral membrane component
21	 42.67	0	24095..25390	-	431	77359003	rsmB	PSHAa0021	-	16S rRNA methyltransferase
22	 44.93	+1	25383..26348	-	321	77359004	fmt	PSHAa0022	-	10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase
23	 39.68	0	26385..26888	-	167	77359005	def	PSHAa0023	-	N-terminal methionine peptide deformylase
24	 40.55	0	27007..28128	+	373	77359006	-	PSHAa0024	-	hypothetical protein
25	 43.07	0	28157..29245	+	362	77359007	smf	PSHAa0025	-	hypothetical protein
26	 39.66	0	29531..30004	+	157	77359008	smg	PSHAa0026	-	hypothetical protein
27	 41.15	0	30253..30828	+	191	77359009	-	PSHAa0027	-	DNA topoisomerase
28	 41.67	0	30853..31416	+	187	77359010	-	PSHAa0028	-	double-stranded RNA-binding protein
29	 43.38	0	31394..32368	+	324	77359011	hemF	PSHAa0029	-	coproporphyrinogen III oxidase
30	 40.18	0	32430..32867	-	145	77359012	-	PSHAa0030	-	oxygen-binding protein
31	 40.48	0	32922..33746	+	274	77359013	aroE	PSHAa0031	-	5-dehydroshikimate reductase
32	 38.04	0	33743..33997	+	84	77359014	-	PSHAa0032	-	hypothetical protein
33	 40.93	0	34002..34541	-	179	77359015	-	PSHAa0033	-	carbonic anhydrase/acetyltransferase
34	 42.34	0	40991..41923	+	310	77359016	-	PSHAa0038	-	hypothetical protein
35	 41.22	0	41950..42849	+	299	77359017	-	PSHAa0039	-	hypothetical protein
36	 40.19	0	42854..44575	+	573	77359018	-	PSHAa0040	-	spermidine synthase
37	 35.51	-1	44655..45068	+	137	77359019	-	PSHAa0041	-	hypothetical protein
38	 41.41	0	45093..45785	+	230	77359020	-	PSHAa0042	-	hypothetical protein
39	 38.81	0	45860..46498	+	212	77359021	-	PSHAa0043	-	hypothetical protein
40	 39.43	0	46537..46815	+	92	77359022	-	PSHAa0044	-	hypothetical protein
41	 31.72	-2	46871..47056	+	61	77359023	-	PSHAa0045	-	hypothetical protein
42	 40.25	0	47082..47486	-	134	77359024	-	PSHAa0046	-	hypothetical protein
43	 38.31	0	47497..48018	-	173	77359025	-	PSHAa0047	-	hypothetical protein
44	 44.23	+1	48132..49508	-	458	77359026	fumC	PSHAa0048	-	fumarate hydratase
45	 39.26	0	49800..50390	+	196	77359027	-	PSHAa0049	-	methylase
46	 40.35	0	50367..51506	-	379	77359028	-	PSHAa0050	-	hypothetical protein
47	 40.48	0	51509..52879	-	456	77359029	-	PSHAa0051	-	esterase
48	 37.34	0	52869..55586	-	905	77359030	-	PSHAa0052	-	sensor protein
49	 39.47	0	55661..56116	-	151	77359031	asnC	PSHAa0053	-	transcriptional regulator
50	 40.85	0	56254..57423	+	389	77359032	-	PSHAa0054	-	hypothetical protein
51	 39.91	0	57425..58549	+	374	77359033	-	PSHAa0055	-	pyridoxal phosphate dependent enzyme
52	 37.42	0	58533..59021	-	162	77359034	-	PSHAa0056	-	RNA binding protein
53	 39.03	0	60483..61412	-	309	77359035	-	PSHAa0058	-	hypothetical protein
54	 42.81	0	61514..62959	+	481	77359036	-	PSHAa0059	-	transcriptional regulator
55	 36.73	-1	63081..63875	-	264	77359037	-	PSHAa0060	-	hypothetical protein
56	 39.52	0	64159..64449	+	96	77359038	-	PSHAa0061	-	hypothetical protein
57	 40.04	0	64576..65067	-	163	77359039	-	PSHAa0062	-	glutathione peroxidase
58	 33.33	-2	65159..65455	-	98	77359040	-	PSHAa0063	-	hypothetical protein
59	 42.99	0	65455..66117	-	220	77359041	-	PSHAa0064	-	amino acid permease
60	 36.67	-1	66290..66949	+	219	77359042	-	PSHAa0065	-	hypothetical protein
61	 41.94	0	67014..67466	-	150	77359043	-	PSHAa0066	-	cytochrome c'
62	 40.34	0	67561..68031	-	156	77359044	-	PSHAa0067	-	hypothetical protein
63	 42.08	0	68256..71720	+	1154	77359045	-	PSHAa0068	-	serine endoprotease
64	 40.00	0	71799..73973	+	724	77359046	ptrB	PSHAa0069	-	oligopeptidase
65	 36.61	-1	74144..74509	+	121	77359047	-	PSHAa0070	-	hypothetical protein
66	 40.69	0	74593..75027	+	144	77359048	-	PSHAa0071	-	hypothetical protein
67	 38.10	0	75066..75422	-	118	77359049	folX	PSHAa0072	-	D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase
68	 39.64	0	75426..75980	-	184	77359050	folE	PSHAa0073	-	GTP cyclohydrolase I
69	 38.89	0	76007..76726	-	239	77359051	folM	PSHAa0074	-	short chain dehydrogenase
70	 43.37	0	76850..77686	-	278	77359052	nadE	PSHAa0075	-	NAD synthetase
71	 40.63	0	77760..78389	-	209	77359053	-	PSHAa0076	-	hypothetical protein
72	 37.76	0	78431..81793	-	1120	77359054	-	PSHAa0077	-	sensor protein
73	 41.91	0	81911..83671	-	586	77359055	-	PSHAa0078	-	hypothetical protein
74	 44.43	+1	83828..86161	+	777	77359056	-	PSHAa0079	-	hydrolase
75	 41.31	0	86306..87157	+	283	77359057	-	PSHAa0080	-	hydrolase
76	 40.27	0	87246..88817	+	523	77359058	-	PSHAa0081	-	hydrolase
77	 42.07	0	88953..89261	+	102	77359059	-	PSHAa0082	-	exporter protein
78	 41.64	0	89331..90173	-	280	77359060	-	PSHAa0083	-	hypothetical protein
79	 40.89	0	90432..90815	+	127	77359061	-	PSHAa0084	-	hypothetical protein
80	 40.43	0	90852..91541	-	229	77359062	-	PSHAa0085	-	ribosomal RNA pseudouridylate synthase
81	 30.65	-2	91554..91739	-	61	77359063	-	PSHAa0086	-	hypothetical protein
82	 42.34	0	91721..92131	+	136	77359064	-	PSHAa0087	-	acetyltransferase
83	 39.78	0	92146..92502	-	118	77359065	-	PSHAa0088	-	hypothetical protein
84	 42.84	0	92582..93286	-	234	77359066	-	PSHAa0089	-	hypothetical protein
85	 43.88	+1	93298..94245	-	315	77359067	xerC	PSHAa0090	-	site-specific recombinase
86	 42.32	0	94242..94853	-	203	77359068	-	PSHAa0091	-	hypothetical protein
87	 41.76	0	94850..95680	-	276	77359069	dapF	PSHAa0092	-	diaminopimelate epimerase
88	 42.58	0	95744..96997	-	417	77359070	lysA	PSHAa0093	-	diaminopimelate decarboxylase
89	 40.00	0	96998..97192	-	64	77359071	-	PSHAa0094	-	hypothetical protein
90	 38.27	0	97340..97663	+	107	77359072	cyaY	PSHAa0095	-	iron scavenging protein
91	 43.30	0	97645..98316	+	223	77359073	-	PSHAa0096	-	hypothetical protein
92	 41.94	0	98339..99244	+	301	77359074	-	PSHAa0097	-	hypothetical protein
93	 43.66	0	99281..100219	+	312	77359075	hemC	PSHAa0098	-	porphobilinogen deaminase
94	 40.63	0	100219..102069	+	616	77359076	hemDX	PSHAa0099	-	uroporphyrinogen-III synthase
95	 37.85	0	102066..103172	+	368	77359077	hemY	PSHAa0100	-	heme biosynthesis protein
96	 38.05	0	103222..105912	+	896	77359078	-	PSHAa0101	-	sensor protein
97	 40.82	0	106040..107041	+	333	77359079	add	PSHAa0102	-	adenosine deaminase
98	 39.90	0	107138..107548	-	136	77359080	-	PSHAa0103	-	hypothetical protein
99	 42.16	0	107724..108437	-	237	77359081	fre	PSHAa0104	-	FMN reductase
100	 43.63	0	108538..110004	-	488	77359082	ubiD	PSHAa0105	-	3-octaprenyl-4-hydroxybenzoate carboxylyase
40.39	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.