IslandPath Analysis: Burkholderia pseudomallei 668



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.59   STD DEV: 5.52
Burkholderia pseudomallei 668 chromosome I, complete sequence - 1..3912947
3951 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.63	0	1..1116	-	371	126441253	-	BURPS668_0001	-	carboxylate-amine ligase
2	 66.17	0	1161..2375	-	404	126438404	-	BURPS668_0002	-	monovalent cation:proton antiporter-2 (CPA2) family protein
3	 71.56	0	3114..5240	-	708	126441676	mnmC	BURPS668_0003	-	5-methylaminomethyl-2-thiouridine methyltransferase
4	 62.01	-1	5479..5757	+	92	126442121	hupA	BURPS668_0004	-	DNA-binding protein HU-alpha
5	 67.56	0	5860..7200	-	446	126439695	-	BURPS668_0005	-	CobW/P47K family protein
6	 61.93	-1	7519..8004	-	161	126439885	-	BURPS668_0006	-	putative invasion protein
7	 66.84	0	8386..10659	+	757	126441466	gspD	BURPS668_0007	-	general secretion pathway protein D
8	 69.61	0	10656..12149	+	497	126440623	gspE	BURPS668_0008	-	general secretory pathway protein E
9	 68.97	0	12154..13371	+	405	126441326	gspF	BURPS668_0009	-	general secretion pathway protein F
10	 71.29	0	13443..13853	-	136	126441203	gspC	BURPS668_0010	-	general secretion pathway protein C
11	 58.33	-1	13852..13983	+	43	126439599	-	BURPS668_0011	-	hypothetical protein
12	 62.25	0	14001..14453	+	150	126438489	gspG	BURPS668_0012	-	general secretion pathway protein G
13	 72.67	0	14488..15087	+	199	126440850	gspH	BURPS668_0013	-	general secretion pathway protein H
14	 72.02	0	15084..15494	+	136	126439950	gspI	BURPS668_0014	-	general secretion pathway protein I
15	 71.74	0	15472..16200	+	242	126438787	gspJ	BURPS668_0015	-	general secretion pathway protein J
16	 71.70	0	16202..17452	+	416	126441463	gspK	BURPS668_0016	-	general secretion pathway protein K
17	 73.76	+1	17498..18907	+	469	126440413	gspL	BURPS668_0017	-	general secretion pathway protein L
18	 70.61	0	18904..19410	+	168	126441244	-	BURPS668_0018	-	general secretory pathway protein M
19	 70.71	0	19449..20240	+	263	126439999	-	BURPS668_0019	-	general secretory pathway protein N
20	 73.78	+1	20429..22045	-	538	126438870	-	BURPS668_0020	-	NodT family efflux transporter outer membrane lipoprotein
21	 74.04	+1	22267..22551	-	94	126441707	-	BURPS668_0021	-	hypothetical protein
22	 69.88	0	22744..23241	+	165	126440642	-	BURPS668_0022	-	MarR family transcriptional regulator
23	 66.92	0	23389..24951	+	520	126439577	-	BURPS668_0023	-	EmrB/QacA family drug resistance transporter
24	 70.67	0	25011..25934	-	307	126438913	-	BURPS668_0024	-	LysR family transcriptional regulator
25	 66.67	0	26028..26156	-	42	126441569	-	BURPS668_0025	-	hypothetical protein
26	 75.58	+1	26074..26544	+	156	126440446	-	BURPS668_0026	-	LrgA family protein
27	 68.88	0	26613..27335	+	240	126439585	-	BURPS668_0027	-	LrgB-like family protein
28	 66.87	0	28150..28647	+	165	126438457	fliL	BURPS668_0028	-	flagellar basal body-associated protein FliL
29	 62.96	0	28670..29668	+	332	126441392	fliM	BURPS668_0029	-	flagellar motor switch protein FliM
30	 68.07	0	29661..30158	+	165	126440526	fliN	BURPS668_0030	-	flagellar motor switch protein FliN
31	 76.28	+1	30155..30820	+	221	126439681	-	BURPS668_0031	-	flagellar biosynthesis protein FliO
32	 66.55	0	30822..31652	+	276	126442020	fliP	BURPS668_0032	-	flagellar biosynthesis protein FliP
33	 67.77	0	31678..31950	+	90	126440833	fliQ	BURPS668_0033	-	flagellar biosynthesis protein FliQ
34	 67.94	0	32069..32851	+	260	126442304	fliR	BURPS668_0034	-	flagellar biosynthetic protein FliR
35	 73.19	+1	33171..33599	-	142	126439407	-	BURPS668_0035	-	MerR family transcriptional regulator
36	 72.49	0	33681..34556	+	291	126440316	-	BURPS668_0036	-	putative methyltransferase
37	 77.39	+1	34549..35070	+	173	126439394	-	BURPS668_0037	-	hypothetical protein
38	 66.67	0	35228..36241	+	337	126440487	-	BURPS668_0038	-	hypothetical protein
39	 65.91	0	36325..37122	+	265	126441124	-	BURPS668_0039	-	ABC transporter, ATP-binding protein
40	 67.84	0	37150..37998	+	282	126438599	-	BURPS668_0040	-	ABC transporter, permease protein
41	 71.52	0	38076..39455	+	459	126439832	-	BURPS668_0041	-	sensor histidine kinase
42	 67.26	0	39466..40143	+	225	126440707	-	BURPS668_0042	-	DNA-binding response regulator
43	 61.31	-1	40305..40472	-	55	126442095	-	BURPS668_0043	-	hypothetical protein
44	 65.03	0	40428..41588	+	386	126441436	-	BURPS668_0044	-	putative porin
45	 74.43	+1	41624..41971	+	115	126441509	-	BURPS668_0045	-	hypothetical protein
46	 68.40	0	42061..44076	+	671	126440391	-	BURPS668_0046	-	type III DNA modification methyltransferase
47	 68.12	0	44117..47146	+	1009	126439782	-	BURPS668_0047	-	Type III restriction enzyme, res subunit
48	 71.21	0	47392..47523	-	43	126438697	-	BURPS668_0048	-	hypothetical protein
49	 66.12	0	47677..48777	+	366	126441408	-	BURPS668_0049	-	putative porin
50	 62.75	0	48910..49113	+	67	126440573	-	BURPS668_0050	-	hypothetical protein
51	 66.67	0	49177..50136	+	319	126439683	-	BURPS668_0051	-	putative transcriptional regulator
52	 71.31	0	50259..50990	-	243	126438835	-	BURPS668_0052	-	ABC transporter, ATP-binding protein
53	 75.52	+1	50975..51403	-	142	126441826	-	BURPS668_0053	-	LuxR family DNA-binding response regulator
54	 70.40	0	51363..52085	-	240	126440144	-	BURPS668_0054	-	ABC transporter, ATP-binding protein
55	 73.14	+1	52082..53131	-	349	126439501	-	BURPS668_0055	-	ABC transporter, permease protein
56	 72.58	0	53128..54006	-	292	126440386	-	BURPS668_0056	-	ABC transporter, permease protein
57	 67.70	0	54011..55270	-	419	126439974	-	BURPS668_0057	-	putative ABC transporter, substrate-binding protein
58	 70.52	0	55487..56992	-	501	126441248	-	BURPS668_0058	-	putative phenylacetaldehyde dehydrogenase
59	 67.68	0	57048..57440	-	130	126440398	-	BURPS668_0059	-	hypothetical protein
60	 67.78	0	57451..58260	-	269	126441546	-	BURPS668_0060	-	hypothetical protein
61	 73.31	+1	58306..59103	-	265	126439518	-	BURPS668_0061	-	short chain dehydrogenase/reductase family oxidoreductase
62	 69.90	0	59188..60858	-	556	126439352	-	BURPS668_0062	-	GMC oxidoreductase
63	 64.91	0	61583..61924	+	113	126442272	-	BURPS668_0063	-	PadR family transcriptional regulator
64	 70.03	0	61921..63108	+	395	126439827	-	BURPS668_0064	-	hypothetical protein
65	 59.17	-1	63188..63307	+	39	126438694	-	BURPS668_0066	-	hypothetical protein
66	 55.00	-2	63274..63393	-	39	126440999	-	BURPS668_0065	-	hypothetical protein
67	 60.78	-1	63452..63757	-	101	126439320	-	BURPS668_0067	-	hypothetical protein
68	 70.31	0	63781..64767	-	328	126440177	-	BURPS668_0068	-	fatty acid desaturase family protein
69	 72.16	0	64797..65633	-	278	126442132	-	BURPS668_0069	-	hypothetical protein
70	 71.91	0	66074..67294	-	406	126438578	-	BURPS668_0070	-	AraC family transcriptional regulator
71	 67.19	0	67293..68429	+	378	126439356	-	BURPS668_0071	-	acyl-CoA dehydrogenase
72	 78.08	+1	68477..68809	-	110	126440763	-	BURPS668_0072	-	hypothetical protein
73	 79.01	+2	68809..69051	-	80	126438765	-	BURPS668_0073	-	hypothetical protein
74	 71.14	0	69070..70275	+	401	126438365	-	BURPS668_0074	-	acetyl-CoA acetyltransferase
75	 70.81	0	70288..72411	+	707	126441017	-	BURPS668_0075	-	putative 3-hydroxyacyl-CoA dehydrogenase
76	 72.22	0	72845..73978	+	377	126440424	-	BURPS668_0076	-	alpha-methylacyl-CoA racemase
77	 67.90	0	74055..74621	-	188	126438619	-	BURPS668_0077	-	putative lipoprotein
78	 65.85	0	74823..74945	+	40	126441467	-	BURPS668_0078	-	hypothetical protein
79	 69.23	0	74957..75814	-	285	126440913	-	BURPS668_0079	-	hypothetical protein
80	 66.67	0	75977..76417	+	146	126439768	-	BURPS668_0080	-	hypothetical protein
81	 68.83	0	76404..76772	+	122	126442147	-	BURPS668_0081	-	putative lipoprotein
82	 73.48	+1	77144..77422	-	92	126440860	-	BURPS668_0082	-	hypothetical protein
83	 75.10	+1	77449..78207	-	252	126440419	prtR	BURPS668_0083	-	transmembrane regulator PrtR
84	 68.99	0	78204..78719	-	171	126438853	-	BURPS668_0084	-	sigma-70 family RNA polymerase sigma factor
85	 70.63	0	78880..79965	+	361	126441950	-	BURPS668_0085	-	putative chaperone protein
86	 64.58	0	79962..80489	+	175	126441583	-	BURPS668_0086	-	putative [Ni] hydrogenase, b-type cytochrome subunit
87	 64.36	0	81360..83828	-	822	126439588	gyrB	BURPS668_0087	-	DNA gyrase subunit B
88	 63.68	0	84017..85120	-	367	126438733	dnaN	BURPS668_0088	-	DNA polymerase III subunit beta
89	 65.48	0	85283..86884	-	533	126441420	dnaA	BURPS668_0089	-	chromosomal replication initiation protein
90	 65.93	0	87330..87464	+	44	126440567	rpmH	BURPS668_0090	-	50S ribosomal protein L34
91	 67.88	0	87538..87948	+	136	126441805	rnpA	BURPS668_0091	-	ribonuclease P protein component
92	 64.44	0	88028..88297	+	89	126440704	-	BURPS668_0092	-	hypothetical protein
93	 64.16	0	88306..89982	+	558	126439633	oxaA	BURPS668_0093	-	putative inner membrane protein translocase component YidC
94	 60.95	-1	90139..90558	-	139	126438791	-	BURPS668_0094	-	hypothetical protein
95	 52.69	-2	90430..90615	+	61	126441344	-	BURPS668_0095	-	hypothetical protein
96	 69.30	0	90896..92299	+	467	126440482	trmE	BURPS668_0096	-	tRNA modification GTPase TrmE
97	 60.00	-1	92468..93697	+	409	126441327	-	BURPS668_0097	-	phage integrase family site specific recombinase
98	 67.61	0	94346..97198	-	950	126440554	-	BURPS668_0098	-	hypothetical protein
99	 64.62	0	97338..97679	-	113	126441145	-	BURPS668_0099	-	hypothetical protein
100	 61.63	-1	97676..97933	-	85	126440291	-	BURPS668_0100	-	hypothetical protein
67.59	MEAN

5.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.