IslandPath Analysis: Rickettsia massiliae MTU5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.29   STD DEV: 3.64
Rickettsia massiliae MTU5, complete genome - 1..1360898
968 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.44	0	1..822	+	273	157964073	-	RMA_0001	-	hypothetical protein
2	 29.39	0	1134..1463	+	109	157964074	trxA	RMA_0002	-	thioredoxin
3	 29.25	0	1441..2223	+	260	157964075	rfbE	RMA_0003	-	O-antigen export system ATP-binding protein RfbE
4	 29.09	0	2224..3000	+	258	157964076	rfbA	RMA_0004	-	O-antigen export system permease protein RfbA
5	 32.15	0	2997..6035	+	1012	157964077	gltD	RMA_0005	-	putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase
6	 38.25	+1	6502..7314	-	270	157964078	lpxA	RMA_0006	-	UDP-N-acetylglucosamine acyltransferase
7	 36.53	+1	7321..7758	-	145	157964079	fabZ	RMA_0007	-	(3R)-hydroxymyristoyl-ACP dehydratase
8	 35.16	0	7942..8979	-	345	157964080	lpxD	RMA_0008	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
9	 29.03	0	14440..14973	-	177	157964081	-	RMA_0017	-	putative P-loop hydrolase
10	 30.78	0	14961..15938	-	325	157964082	znuA	RMA_0018	-	Zinc/manganese ABC transporter substrate binding protein
11	 30.23	0	15914..17170	-	418	157964083	pcnB	RMA_0019	-	Poly(A) polymerase
12	 34.26	0	18551..23920	+	1789	157964084	sca1	RMA_0020	-	cell surface antigen Sca1
13	 30.39	0	27840..28349	-	169	157964085	atpF	RMA_0025	-	F0F1 ATP synthase subunit B
14	 25.74	-1	28346..28819	-	157	157964086	atpX	RMA_0026	-	F0F1 ATP synthase subunit B'
15	 36.71	+1	28838..29074	-	78	157964087	atpE	RMA_0027	-	F0F1 ATP synthase subunit C
16	 30.52	0	29133..29879	-	248	157964088	atpB	RMA_0028	-	F0F1 ATP synthase subunit A
17	 33.33	0	29866..30234	-	122	157964089	-	RMA_0029	-	hypothetical protein
18	 31.21	0	30240..31088	-	282	157964090	dsbG	RMA_0030	-	protein-disulfide isomerase
19	 35.03	0	31191..31778	+	195	157964091	-	RMA_0031	-	transcriptional regulator
20	 32.35	0	32025..33644	-	539	157964092	-	RMA_0032	-	putative methyltransferase
21	 31.30	0	34061..35143	-	360	157964093	recF	RMA_0033	-	recombination protein F
22	 31.25	0	37989..38660	-	223	157964094	-	RMA_0043	-	hypothetical protein
23	 26.77	-1	41691..42284	+	197	157964095	-	RMA_0048	-	Sco2 protein precursor
24	 31.05	0	42295..42864	-	189	157964096	-	RMA_0049	-	hypothetical protein
25	 26.34	-1	42929..43600	+	223	157964097	cvpA	RMA_0050	-	putative colicin V production membrane protein
26	 34.46	0	46959..48290	-	443	157964098	-	RMA_0056	-	hypothetical protein
27	 31.25	0	48388..49059	-	223	157964099	-	RMA_0057	-	hypothetical protein
28	 37.20	+1	53007..55589	+	860	157964100	clpB	RMA_0063	-	ClpB
29	 25.93	-1	55829..56368	-	179	157964101	-	RMA_0064	-	hypothetical protein
30	 34.40	0	56448..57482	-	344	157964102	gcp	RMA_0065	-	O-sialoglycoprotein endopeptidase
31	 31.24	0	57665..58858	-	397	157964103	aco1	RMA_0066	-	Acyl-CoA desaturase 1
32	 26.26	-1	59709..60146	+	145	157964104	rpsF	RMA_0068	-	30S ribosomal protein S6
33	 32.64	0	60171..60458	+	95	157964105	rpsR	RMA_0069	-	30S ribosomal protein S18
34	 30.23	0	60470..60985	+	171	157964106	rplI	RMA_0070	-	50S ribosomal protein L9
35	 30.61	0	61279..62712	+	477	157964107	tilS	RMA_0071	-	tRNA(Ile)-lysidine synthetase
36	 37.92	+1	62810..64729	+	639	157964108	ftsH	RMA_0072	-	ATP-dependent metalloprotease FtsH
37	 36.77	+1	66128..66913	+	261	157964109	sdhB	RMA_0075	-	succinate dehydrogenase iron-sulfur subunit
38	 33.41	0	67259..68515	-	418	157964110	-	RMA_0077	-	hypothetical protein
39	 30.44	0	68458..69252	-	264	157964111	lgt	RMA_0078	-	prolipoprotein diacylglyceryl transferase
40	 27.84	-1	69482..70645	+	387	157964112	-	RMA_0079	-	hypothetical protein
41	 30.42	0	70830..72512	+	560	157964113	yidC	RMA_0080	-	putative inner membrane protein translocase component YidC
42	 29.85	0	72512..73057	+	181	157964114	pgsA	RMA_0081	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
43	 29.23	0	73071..73631	+	186	157964115	-	RMA_0082	-	hypothetical protein
44	 30.71	0	73804..74223	-	139	157964116	-	RMA_0083	-	hypothetical protein
45	 30.56	0	74418..74849	+	143	157964117	-	RMA_0084	-	tellurite resistance protein-related protein
46	 29.04	0	76181..76879	-	232	157964118	def3	RMA_0087	-	polypeptide deformylase
47	 31.47	0	77058..78560	+	500	157964119	tlc1	RMA_0088	-	ATP/ADP translocase
48	 34.85	0	78564..79883	+	439	157964120	uhpC	RMA_0089	-	sugar phosphate permease
49	 32.18	0	79902..80336	+	144	157964121	ndk	RMA_0090	-	nucleoside diphosphate kinase
50	 32.80	0	80340..82208	+	622	157964122	gidA	RMA_0091	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
51	 24.91	-2	82186..82767	+	193	157964123	gidB	RMA_0092	-	glucose-inhibited division protein B
52	 28.26	-1	82764..83531	+	255	157964124	soj	RMA_0093	-	ATPase involved in chromosome partitioning
53	 27.55	-1	83518..84381	+	287	157964125	-	RMA_0094	-	ParB-like partition protein
54	 29.80	0	84643..86310	+	555	157964126	abcT1	RMA_0095	-	putative ABC transporter ATP-binding protein
55	 20.91	-2	86301..86630	+	109	157964127	-	RMA_0096	-	hypothetical protein
56	 35.63	0	86663..87490	+	275	157964128	kdsA	RMA_0097	-	2-dehydro-3-deoxyphosphooctonate aldolase
57	 36.04	+1	89522..89854	-	110	157964129	iscA1	RMA_0101	-	Iron-sulfur cluster assembly accessory protein
58	 33.25	0	90109..91269	+	386	157964130	dgt	RMA_0102	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
59	 34.02	0	91413..93149	+	578	157964131	argS	RMA_0103	-	arginyl-tRNA synthetase
60	 28.28	-1	93304..93996	+	230	157964132	-	RMA_0104	-	hypothetical protein
61	 36.31	+1	94187..96400	+	737	157964133	parC	RMA_0105	-	DNA topoisomerase IV subunit A
62	 34.77	0	97617..98939	-	440	157964134	-	RMA_0106	-	hypothetical protein
63	 33.51	0	99203..99775	+	190	157964135	dcd	RMA_0107	-	deoxycytidine triphosphate deaminase
64	 31.63	0	99809..100279	+	156	157964136	secB	RMA_0108	-	preprotein translocase subunit SecB
65	 34.43	0	100486..101217	+	243	157964137	czcR	RMA_0109	-	transcriptional activator protein CzcR
66	 29.81	0	101221..102042	+	273	157964138	-	RMA_0110	-	7-cyano-7-deazaguanine reductase
67	 33.86	0	102367..102933	-	188	157964139	-	RMA_0111	-	hypothetical protein
68	 36.97	+1	102982..104409	-	475	157964140	pntB	RMA_0112	-	NAD(p) transhydrogenase subunit beta
69	 33.88	0	104517..105251	-	244	157964141	ompW	RMA_0113	-	OmpW family outer-membrane protein
70	 33.00	0	105400..106290	+	296	157964142	sam	RMA_0114	-	S-adenosylmethionine transporter
71	 33.10	0	106268..107533	+	421	157964143	proP1	RMA_0115	-	proline/betaine transporter
72	 33.54	0	107530..108024	+	164	157964144	-	RMA_0116	-	hypothetical protein
73	 30.36	0	108366..108668	+	100	157964145	secG	RMA_0117	-	preprotein translocase subunit SecG
74	 31.04	0	109631..115048	-	1805	157964146	sca2	RMA_0119	-	cell surface antigen Sca2
75	 33.33	0	115281..116660	+	459	157964147	cysS	RMA_0120	-	cysteinyl-tRNA synthetase
76	 32.91	0	116853..117791	+	312	157964148	rpsB	RMA_0121	-	30S ribosomal protein S2
77	 36.24	+1	117979..118908	+	309	157964149	tsf	RMA_0122	-	elongation factor Ts
78	 34.67	0	120427..121851	-	474	157964150	kdtA	RMA_0125	-	3-deoxy-D-manno-octulosonic-acid transferase
79	 30.84	0	121797..122477	-	226	157964151	-	RMA_0126	-	hypothetical protein
80	 34.32	0	122625..123845	-	406	157964152	aatA	RMA_0127	-	aspartate aminotransferase
81	 27.27	-1	123890..124153	-	87	157964153	-	RMA_0128	-	hypothetical protein
82	 28.97	0	124146..124397	-	83	157964154	-	RMA_0129	-	antitoxin of toxin-antitoxin
83	 24.18	-2	124539..125543	+	334	157964155	-	RMA_0130	-	hypothetical protein
84	 34.21	0	125506..126303	+	265	157964156	vacJ	RMA_0131	-	VacJ lipoprotein precursor
85	 32.09	0	126200..126922	+	240	157964157	-	RMA_0132	-	ABC-type transporter
86	 31.29	0	127100..128128	+	342	157964158	prs	RMA_0133	-	ribose-phosphate pyrophosphokinase
87	 34.30	0	128059..129192	+	377	157964159	alr	RMA_0134	-	alanine racemase
88	 37.36	+1	129330..130124	+	264	157964160	-	RMA_0135	-	ABC transporter permease protein
89	 32.38	0	130194..131033	+	279	157964161	mkl	RMA_0136	-	ribonucleotide ABC transporter ATP-binding protein
90	 26.51	-1	131035..131283	+	82	157964162	-	RMA_0137	-	hypothetical protein
91	 34.66	0	132534..132911	-	125	157964163	-	RMA_0138	-	hypothetical protein
92	 28.74	0	132927..133361	-	144	157964164	-	RMA_0139	-	hypothetical protein
93	 35.03	0	133727..134020	+	97	157964165	rpmB	RMA_0140	-	50S ribosomal protein L28
94	 32.92	0	134011..134253	+	80	157964166	rpmE	RMA_0141	-	50S ribosomal protein L31
95	 31.78	0	134647..135288	+	213	157964167	-	RMA_0142	-	GTPase EngB
96	 28.57	-1	135236..136159	+	307	157964168	argB	RMA_0143	-	acetylglutamate kinase
97	 29.86	0	136172..136459	+	95	157964169	virB3	RMA_0144	-	VirB3
98	 34.31	0	136521..138965	+	814	157964170	virB4-1	RMA_0145	-	VirB4
99	 36.27	+1	139083..142493	+	1136	157964171	virB6-1	RMA_0146	-	VirB6
100	 34.88	0	142468..144465	+	665	157964172	virB6-2	RMA_0147	-	VirB6
32.29	MEAN

3.64	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.