IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.44   STD DEV: 5.59
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete genome - 1..1856951
1721 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.14	0	104..1468	+	454	116513229	-	LBUL_0001	-	DNA replication ATPase initiation
2	 53.01	0	1650..2777	+	375	116513230	-	LBUL_0002	-	DNA polymerase sliding clamp subunit
3	 49.57	0	2999..3232	+	77	116513231	-	LBUL_0003	-	S4-like RNA binding protein
4	 57.24	+1	3232..4377	+	381	116513232	recF	LBUL_0004	-	recombination protein F
5	 57.03	+1	4361..6322	+	653	116513233	-	LBUL_0005	-	DNA gyrase, B subunit
6	 57.44	+1	6335..8806	+	823	116513234	-	LBUL_0006	-	DNA gyrase, A subunit
7	 43.88	-1	9022..9315	+	97	116513235	rpsF	LBUL_0007	-	30S ribosomal protein S6
8	 53.65	0	9356..9931	+	191	116513236	-	LBUL_0008	-	single-stranded DNA-binding protein
9	 47.26	0	9958..10194	+	78	116513237	rpsR	LBUL_0009	-	30S ribosomal protein S18
10	 57.17	+1	10335..12356	+	673	116513238	-	LBUL_0010	-	signal protein
11	 52.19	0	12379..12834	+	151	116513239	rplI	LBUL_0011	-	50S ribosomal protein L9
12	 55.36	0	12858..14228	+	456	116513240	-	LBUL_0012	-	replicative DNA helicase
13	 54.07	0	14180..15433	-	417	116513241	-	LBUL_0013	-	hypothetical protein
14	 36.94	-2	15541..17646	-	701	116513242	-	LBUL_0014	-	peptide ABC transporter permease
15	 44.36	-1	17796..18185	+	129	116513243	-	LBUL_0015	-	hypothetical protein
16	 49.78	0	18198..18422	+	74	116513244	-	LBUL_0016	-	hypothetical protein
17	 54.33	0	18533..19237	-	234	116513245	-	LBUL_0017	-	Mg2+ transporter
18	 39.97	-1	19634..20371	+	245	116513246	-	LBUL_0019	-	XRE family transcriptional regulator
19	 46.62	0	22935..23717	-	260	116513247	-	LBUL_0021	-	response regulator
20	 48.43	0	23723..25027	-	434	116513248	-	LBUL_0022	-	signal transduction protein
21	 41.67	-1	25397..25564	+	55	116513249	-	LBUL_0023	-	hypothetical protein
22	 52.51	0	25568..27277	+	569	116513250	-	LBUL_0024	-	ABC-type multidrug transport system, ATPase and permease component
23	 51.48	0	27284..29785	+	833	116513251	-	LBUL_0025	-	Serine/threonine protein kinase
24	 43.21	-1	29805..29966	+	53	116513252	-	LBUL_0026	-	hypothetical protein
25	 53.65	0	30904..31671	+	255	116513253	-	LBUL_0029	-	ABC-type uncharacterized transport system, permease component
26	 39.02	-2	31674..31919	+	81	116513254	-	LBUL_0030	-	hypothetical protein
27	 52.22	0	32140..33627	-	495	116513255	-	LBUL_0031	-	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
28	 60.07	+1	34790..35623	+	277	116513256	-	LBUL_0033	-	pyridoxal/pyridoxine/pyridoxamine kinase
29	 57.35	+1	35657..36214	+	185	116513257	-	LBUL_0034	-	hypothetical protein
30	 58.28	+1	36241..39006	-	921	116513258	-	LBUL_0035	-	superfamily II DNA/RNA helicase
31	 53.02	0	39155..39865	+	236	116513259	-	LBUL_0036	-	integral membrane protein
32	 53.91	0	40009..40455	+	148	116513260	-	LBUL_0037	-	hypothetical protein
33	 56.93	+1	40564..40974	+	136	116513261	-	LBUL_0038	-	transcriptional regulator
34	 53.51	0	41114..41341	+	75	116513262	-	LBUL_0039	-	nucleoside-diphosphate-sugar epimerase
35	 54.95	0	41365..41697	+	110	116513263	-	LBUL_0040	-	nucleoside-diphosphate-sugar epimerase
36	 51.02	0	41797..41943	+	48	116513264	-	LBUL_0041	-	nucleoside-diphosphate-sugar epimerase
37	 50.26	0	42022..42210	+	62	116513265	-	LBUL_0042	-	4-oxalocrotonate tautomerase
38	 37.63	-2	42272..42364	+	30	116513266	-	LBUL_0043	-	hypothetical protein
39	 47.99	0	42676..43248	+	190	116513267	-	LBUL_0044	-	hypothetical protein
40	 32.51	-2	48853..49215	+	120	116513268	-	LBUL_0048	-	hypothetical protein
41	 55.56	0	49244..49369	+	41	116513269	-	LBUL_0049	-	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
42	 53.58	0	49497..50459	+	320	116513270	-	LBUL_0050	-	phosphomannose isomerase
43	 54.41	0	50499..50702	+	67	116513271	-	LBUL_0051	-	transcriptional regulator and fructokinase
44	 50.65	0	50802..51032	-	76	116513272	-	LBUL_0052	-	hypothetical protein
45	 49.30	0	51040..51252	-	70	116513273	-	LBUL_0053	-	hypothetical protein
46	 51.42	0	51239..51907	-	222	116513274	-	LBUL_0054	-	hypothetical protein
47	 52.55	0	52176..52940	+	254	116513275	-	LBUL_0055	-	hypothetical protein
48	 56.96	+1	52937..53719	+	260	116513276	-	LBUL_0056	-	hypothetical protein
49	 54.73	0	53770..54255	-	161	116513277	-	LBUL_0057	-	DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
50	 53.45	0	54683..55393	-	236	116513278	-	LBUL_0058	-	glycerol uptake facilitator related permease (major Intrinsic protein family)
51	 52.68	0	55747..56733	+	328	116513279	-	LBUL_0059	-	glycosidase
52	 54.85	0	57249..59177	+	642	116513280	-	LBUL_0060	-	hypothetical protein
53	 53.27	0	59183..60130	+	315	116513281	-	LBUL_0061	-	glycosyltransferase-like protein
54	 53.83	0	60158..60679	-	173	116513282	-	LBUL_0062	-	hypothetical protein
55	 56.00	0	60866..61699	+	277	116513283	-	LBUL_0063	-	hypothetical protein
56	 51.83	0	61646..62191	-	181	116513284	-	LBUL_0064	-	EAL domain-containing protein
57	 54.53	0	62485..63069	+	194	116513285	-	LBUL_0065	-	lysophospholipase L1 related esterase
58	 56.27	+1	63066..63719	+	217	116513286	-	LBUL_0066	-	phosphoglycerate mutase family protein
59	 56.11	+1	63910..64515	+	201	116513287	-	LBUL_0067	-	hypothetical protein
60	 47.40	0	64875..65066	+	63	116513288	-	LBUL_0068	-	hypothetical protein
61	 45.77	0	66180..66380	+	66	116513289	-	LBUL_0069	-	hypothetical protein
62	 60.07	+1	66615..67160	-	181	116513290	-	LBUL_0070	-	hypothetical protein
63	 44.83	-1	67869..67955	-	28	116513291	-	LBUL_0071	-	hypothetical protein
64	 54.62	0	68797..69510	+	237	116513292	-	LBUL_0073	-	HAD superfamily hydrolase
65	 57.37	+1	70255..71082	+	275	116513293	-	LBUL_0075	-	exonuclease III
66	 50.31	0	71162..71638	+	158	116513294	-	LBUL_0076	-	hypothetical protein
67	 56.88	+1	71825..72733	+	302	116513295	-	LBUL_0077	-	L-2-hydroxyisocaproate/malate/lactate dehydrogenase-like protein
68	 56.41	+1	72852..73709	+	285	116513296	-	LBUL_0078	-	aldo/keto reductase
69	 56.04	+1	74027..76246	+	739	116513297	-	LBUL_0079	-	ribonucleotide reductase, alpha subunit
70	 45.83	0	76311..77126	+	271	116513298	-	LBUL_0080	-	hypothetical protein
71	 54.46	0	77128..77676	+	182	116513299	-	LBUL_0081	-	hypothetical protein
72	 57.27	+1	77669..78232	+	187	116513300	-	LBUL_0082	-	Cob(I)alamin adenosyltransferase family protein
73	 45.92	0	78660..79406	+	248	116513301	-	LBUL_0083	-	IS30 family transposase
74	 48.10	0	79744..80745	-	333	116513302	-	LBUL_0084	-	lactate dehydrogenase
75	 54.86	0	82379..82810	+	143	116513303	-	LBUL_0086	-	peptide deformylase
76	 54.76	0	82854..83735	-	293	116513304	-	LBUL_0087	-	ABC-type metal ion transport system, periplasmic component/surface antigen
77	 56.46	+1	83763..84242	-	159	116513305	-	LBUL_0088	-	S-ribosylhomocysteinase
78	 53.00	0	84420..85202	-	260	116513306	-	LBUL_0089	-	homoserine trans-succinylase
79	 52.00	0	87132..87431	-	99	116513307	-	LBUL_0091	-	Acyl-CoA dehydrogenase
80	 53.82	0	87594..89072	-	492	116513308	-	LBUL_0092	-	ABC-type multidrug transport system, ATPase and permease component
81	 49.34	0	89924..90604	-	226	116513309	-	LBUL_0094	-	hypothetical protein
82	 52.38	0	90881..91804	-	307	116513310	-	LBUL_0095	-	fhu operon transcription regulator
83	 53.55	0	91799..92713	+	304	116513311	-	LBUL_0096	-	methionine synthase II (cobalamin-independent)
84	 38.04	-2	93313..93588	+	91	116513312	-	LBUL_0097	-	hypothetical protein
85	 44.57	-1	93588..93845	+	85	116513313	-	LBUL_0098	-	hypothetical protein
86	 54.63	0	94018..94956	+	312	116513314	-	LBUL_0099	-	transcriptional regulator/sugar kinase
87	 55.63	0	95007..95930	-	307	116513315	ldh	LBUL_0100	-	L-lactate dehydrogenase
88	 56.07	+1	96649..97875	-	408	116513316	-	LBUL_0101	-	major facilitator superfamily permease
89	 55.62	0	98076..98618	-	180	116513317	-	LBUL_0102	-	hypothetical protein
90	 53.67	0	99840..100739	-	299	116513318	-	LBUL_0104	-	transcriptional regulator
91	 54.19	0	100939..102837	+	632	116513319	-	LBUL_0105	-	shikimate 5-dehydrogenase/FAD-dependent oxidase domain-containing protein
92	 54.28	0	103059..103922	-	287	116513320	-	LBUL_0106	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
93	 52.74	0	103938..104540	-	200	116513321	-	LBUL_0107	-	lipopolysaccharide biosynthesis glycosyltransferase
94	 54.30	0	104919..105743	-	274	116513322	-	LBUL_0108	-	lipopolysaccharide biosynthesis glycosyltransferase
95	 54.95	0	105771..106547	-	258	116513323	-	LBUL_0109	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
96	 52.81	0	106805..107533	+	242	116513324	-	LBUL_0111	-	DNA-binding response regulator
97	 55.61	0	107613..109475	+	620	116513325	-	LBUL_0112	-	Signal transduction histidine kinase
98	 49.55	0	109465..109908	+	147	116513326	-	LBUL_0113	-	hypothetical protein
99	 56.57	+1	109876..110073	-	65	116513327	-	LBUL_0114	-	hypothetical protein
100	 55.02	0	110089..111024	+	311	116513328	-	LBUL_0115	-	hypothetical protein
50.44	MEAN

5.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.