IslandPathversion 1.0

IslandPath Analysis: Dechloromonas aromatica RCB



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.34 STD DEV: 4.35
Dechloromonas aromatica RCB, complete genome - 1..4501104
4171 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.58	-1	151..1548	+	465	71905643	-	Daro_0001	-	chromosomal replication initiator protein DnaA
2	 56.82	0	1758..2864	+	368	71905644	-	Daro_0002	-	DNA polymerase III, beta subunit
3	 59.48	0	2938..5442	+	834	71905645	gyrB	Daro_0003	-	DNA gyrase subunit B
4	 60.00	0	5514..5963	+	149	71905646	-	Daro_0004	-	histidine triad (HIT) protein
5	 59.38	0	5976..6428	+	150	71905647	-	Daro_0005	-	D-tyrosyl-tRNA deacylase
6	 63.60	0	6432..7247	-	271	71905648	-	Daro_0006	-	silent information regulator protein Sir2
7	 58.07	0	7338..8477	-	379	71905649	-	Daro_0007	-	response regulator receiver modulated metal dependent phosphohydrolase
8	 59.26	0	8504..12823	-	1439	71905650	-	Daro_0008	-	PAS
9	 60.33	0	12950..13990	-	346	71905651	-	Daro_0009	-	ApbE-like lipoprotein
10	 61.47	0	13975..14994	-	339	71905652	-	Daro_0010	-	glutathione synthetase
11	 62.47	0	15001..16287	-	428	71905653	-	Daro_0011	-	glutamate--cysteine ligase GshA
12	 60.14	0	16355..17488	-	377	71905654	-	Daro_0012	-	response regulator receiver
13	 58.66	0	17619..19241	+	540	71905655	-	Daro_0013	-	ABC transporter related
14	 63.62	0	19334..19825	-	163	71905656	-	Daro_0014	-	hypothetical protein
15	 60.93	0	19904..20374	-	156	71905657	-	Daro_0015	-	hypothetical protein
16	 58.62	0	20514..21221	+	235	71905658	-	Daro_0016	-	ribosomal small subunit pseudouridine synthase A
17	 62.62	0	21218..22132	+	304	71905659	-	Daro_0017	-	LysR family transcriptional regulator
18	 60.63	0	22231..24750	-	839	161377478	-	Daro_0018	-	DNA topoisomerase III
19	 61.47	0	24827..25903	-	358	71905661	-	Daro_0019	-	SMF protein
20	 57.27	0	25900..26931	-	343	71905662	-	Daro_0020	-	peptidoglycan-binding LysM
21	 55.75	0	27075..27578	+	167	71905663	-	Daro_0021	-	peptide deformylase
22	 62.34	0	27575..28498	+	307	71905664	fmt	Daro_0022	-	methionyl-tRNA formyltransferase
23	 61.68	0	28557..29399	+	280	71905665	-	Daro_0023	-	heat shock protein HtpX
24	 60.40	0	29409..29759	-	116	71905666	-	Daro_0024	-	hypothetical protein
25	 62.71	0	29810..30391	-	193	71905667	-	Daro_0025	-	peptidase C56, PfpI
26	 61.62	0	30494..30889	-	131	71905668	-	Daro_0026	-	S-adenosylmethionine decarboxylase related
27	 60.49	0	30899..31804	-	301	71905669	-	Daro_0027	-	hypothetical protein
28	 63.33	0	31839..33098	+	419	71905670	-	Daro_0028	-	Fmu, rRNA SAM-dependent methyltransferase
29	 58.01	0	33061..33672	+	203	71905671	-	Daro_0029	-	proline rich signal peptide protein
30	 61.43	0	33669..35825	+	718	71905672	-	Daro_0030	-	multi-sensor signal transduction histidine kinase
31	 58.93	0	35803..37068	+	421	71905673	-	Daro_0031	-	helix-turn-helix, Fis-type
32	 58.71	0	37182..38249	+	355	71905674	-	Daro_0032	-	uroporphyrinogen decarboxylase HemE
33	 63.22	0	38532..40532	+	666	71905675	-	Daro_0033	-	replication restart DNA helicase PriA
34	 59.86	0	40584..41567	+	327	71905676	-	Daro_0034	-	hypothetical protein
35	 62.40	0	41511..42728	-	405	71905677	-	Daro_0035	-	major facilitator transporter
36	 60.99	0	42725..43429	-	234	71905678	-	Daro_0036	-	MOSC
37	 62.53	0	43448..44341	-	297	71905679	-	Daro_0037	-	N-acetylglucosamine kinase
38	 58.68	0	44341..44991	-	216	71905680	-	Daro_0038	-	hypothetical protein
39	 60.00	0	45075..45404	+	109	71905681	-	Daro_0039	-	hypothetical protein
40	 59.07	0	45412..48993	-	1193	71905682	-	Daro_0040	-	PAS/PAC sensor hybrid histidine kinase
41	 57.19	0	49018..49587	-	189	71905683	-	Daro_0041	-	hypothetical protein
42	 60.88	0	49624..49986	-	120	71905684	-	Daro_0042	-	hypothetical protein
43	 62.76	0	50052..50768	+	238	71905685	-	Daro_0043	-	cell wall hydrolase/autolysin
44	 61.83	0	50775..51788	-	337	71905686	-	Daro_0044	-	UDP-N-acetylmuramate dehydrogenase
45	 58.89	0	51862..53673	+	603	71905687	-	Daro_0045	-	ABC transporter related
46	 61.97	0	53692..57354	-	1220	71905688	metH	Daro_0046	-	B12-dependent methionine synthase
47	 61.21	0	57555..58049	-	164	71905689	-	Daro_0047	-	hypothetical protein
48	 61.65	0	58133..58531	+	132	71905690	-	Daro_0048	-	rhodanese-like protein
49	 64.17	+1	58511..59713	-	400	71905691	-	Daro_0049	-	Bcr/CflA subfamily drug resistance transporter
50	 63.59	0	59706..61202	-	498	71905692	-	Daro_0050	-	Mg chelatase-related protein
51	 58.44	0	61209..61451	-	80	71905693	-	Daro_0051	-	hypothetical protein
52	 56.72	0	61690..62463	+	257	71905694	-	Daro_0052	-	hypothetical protein
53	 55.46	0	62549..62887	+	112	71905695	-	Daro_0053	-	nitrogen regulatory protein P-II
54	 62.73	0	62898..64397	+	499	71905696	-	Daro_0054	-	ammonium transporter
55	 60.77	0	64513..65055	-	180	71905697	-	Daro_0055	-	isochorismatase hydrolase
56	 59.08	0	65055..65924	-	289	71905698	purU	Daro_0056	-	formyltetrahydrofolate deformylase
57	 59.48	0	65930..66541	-	203	71905699	-	Daro_0057	-	phosphoserine phosphatase
58	 61.35	0	66585..68936	-	783	71905700	-	Daro_0058	-	diguanylate cyclase/phosphodiesterase
59	 58.80	0	68936..69799	-	287	71905701	-	Daro_0059	-	ABC-type phosphate/phosphonate transport system periplasmic component-like protein
60	 54.60	-1	70193..70507	+	104