IslandPath Analysis: Dechloromonas aromatica RCB



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.34   STD DEV: 4.35
Dechloromonas aromatica RCB, complete genome - 1..4501104
4171 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.58	-1	151..1548	+	465	71905643	-	Daro_0001	-	chromosomal replication initiator protein DnaA
2	 56.82	0	1758..2864	+	368	71905644	-	Daro_0002	-	DNA polymerase III, beta subunit
3	 59.48	0	2938..5442	+	834	71905645	gyrB	Daro_0003	-	DNA gyrase subunit B
4	 60.00	0	5514..5963	+	149	71905646	-	Daro_0004	-	histidine triad (HIT) protein
5	 59.38	0	5976..6428	+	150	71905647	-	Daro_0005	-	D-tyrosyl-tRNA deacylase
6	 63.60	0	6432..7247	-	271	71905648	-	Daro_0006	-	silent information regulator protein Sir2
7	 58.07	0	7338..8477	-	379	71905649	-	Daro_0007	-	response regulator receiver modulated metal dependent phosphohydrolase
8	 59.26	0	8504..12823	-	1439	71905650	-	Daro_0008	-	PAS
9	 60.33	0	12950..13990	-	346	71905651	-	Daro_0009	-	ApbE-like lipoprotein
10	 61.47	0	13975..14994	-	339	71905652	-	Daro_0010	-	glutathione synthetase
11	 62.47	0	15001..16287	-	428	71905653	-	Daro_0011	-	glutamate--cysteine ligase GshA
12	 60.14	0	16355..17488	-	377	71905654	-	Daro_0012	-	response regulator receiver
13	 58.66	0	17619..19241	+	540	71905655	-	Daro_0013	-	ABC transporter related
14	 63.62	0	19334..19825	-	163	71905656	-	Daro_0014	-	hypothetical protein
15	 60.93	0	19904..20374	-	156	71905657	-	Daro_0015	-	hypothetical protein
16	 58.62	0	20514..21221	+	235	71905658	-	Daro_0016	-	ribosomal small subunit pseudouridine synthase A
17	 62.62	0	21218..22132	+	304	71905659	-	Daro_0017	-	LysR family transcriptional regulator
18	 60.63	0	22231..24750	-	839	161377478	-	Daro_0018	-	DNA topoisomerase III
19	 61.47	0	24827..25903	-	358	71905661	-	Daro_0019	-	SMF protein
20	 57.27	0	25900..26931	-	343	71905662	-	Daro_0020	-	peptidoglycan-binding LysM
21	 55.75	0	27075..27578	+	167	71905663	-	Daro_0021	-	peptide deformylase
22	 62.34	0	27575..28498	+	307	71905664	fmt	Daro_0022	-	methionyl-tRNA formyltransferase
23	 61.68	0	28557..29399	+	280	71905665	-	Daro_0023	-	heat shock protein HtpX
24	 60.40	0	29409..29759	-	116	71905666	-	Daro_0024	-	hypothetical protein
25	 62.71	0	29810..30391	-	193	71905667	-	Daro_0025	-	peptidase C56, PfpI
26	 61.62	0	30494..30889	-	131	71905668	-	Daro_0026	-	S-adenosylmethionine decarboxylase related
27	 60.49	0	30899..31804	-	301	71905669	-	Daro_0027	-	hypothetical protein
28	 63.33	0	31839..33098	+	419	71905670	-	Daro_0028	-	Fmu, rRNA SAM-dependent methyltransferase
29	 58.01	0	33061..33672	+	203	71905671	-	Daro_0029	-	proline rich signal peptide protein
30	 61.43	0	33669..35825	+	718	71905672	-	Daro_0030	-	multi-sensor signal transduction histidine kinase
31	 58.93	0	35803..37068	+	421	71905673	-	Daro_0031	-	helix-turn-helix, Fis-type
32	 58.71	0	37182..38249	+	355	71905674	-	Daro_0032	-	uroporphyrinogen decarboxylase HemE
33	 63.22	0	38532..40532	+	666	71905675	-	Daro_0033	-	replication restart DNA helicase PriA
34	 59.86	0	40584..41567	+	327	71905676	-	Daro_0034	-	hypothetical protein
35	 62.40	0	41511..42728	-	405	71905677	-	Daro_0035	-	major facilitator transporter
36	 60.99	0	42725..43429	-	234	71905678	-	Daro_0036	-	MOSC
37	 62.53	0	43448..44341	-	297	71905679	-	Daro_0037	-	N-acetylglucosamine kinase
38	 58.68	0	44341..44991	-	216	71905680	-	Daro_0038	-	hypothetical protein
39	 60.00	0	45075..45404	+	109	71905681	-	Daro_0039	-	hypothetical protein
40	 59.07	0	45412..48993	-	1193	71905682	-	Daro_0040	-	PAS/PAC sensor hybrid histidine kinase
41	 57.19	0	49018..49587	-	189	71905683	-	Daro_0041	-	hypothetical protein
42	 60.88	0	49624..49986	-	120	71905684	-	Daro_0042	-	hypothetical protein
43	 62.76	0	50052..50768	+	238	71905685	-	Daro_0043	-	cell wall hydrolase/autolysin
44	 61.83	0	50775..51788	-	337	71905686	-	Daro_0044	-	UDP-N-acetylmuramate dehydrogenase
45	 58.89	0	51862..53673	+	603	71905687	-	Daro_0045	-	ABC transporter related
46	 61.97	0	53692..57354	-	1220	71905688	metH	Daro_0046	-	B12-dependent methionine synthase
47	 61.21	0	57555..58049	-	164	71905689	-	Daro_0047	-	hypothetical protein
48	 61.65	0	58133..58531	+	132	71905690	-	Daro_0048	-	rhodanese-like protein
49	 64.17	+1	58511..59713	-	400	71905691	-	Daro_0049	-	Bcr/CflA subfamily drug resistance transporter
50	 63.59	0	59706..61202	-	498	71905692	-	Daro_0050	-	Mg chelatase-related protein
51	 58.44	0	61209..61451	-	80	71905693	-	Daro_0051	-	hypothetical protein
52	 56.72	0	61690..62463	+	257	71905694	-	Daro_0052	-	hypothetical protein
53	 55.46	0	62549..62887	+	112	71905695	-	Daro_0053	-	nitrogen regulatory protein P-II
54	 62.73	0	62898..64397	+	499	71905696	-	Daro_0054	-	ammonium transporter
55	 60.77	0	64513..65055	-	180	71905697	-	Daro_0055	-	isochorismatase hydrolase
56	 59.08	0	65055..65924	-	289	71905698	purU	Daro_0056	-	formyltetrahydrofolate deformylase
57	 59.48	0	65930..66541	-	203	71905699	-	Daro_0057	-	phosphoserine phosphatase
58	 61.35	0	66585..68936	-	783	71905700	-	Daro_0058	-	diguanylate cyclase/phosphodiesterase
59	 58.80	0	68936..69799	-	287	71905701	-	Daro_0059	-	ABC-type phosphate/phosphonate transport system periplasmic component-like protein
60	 54.60	-1	70193..70507	+	104	71905702	-	Daro_0060	-	hypothetical protein
61	 62.68	0	70544..72451	-	635	71905703	-	Daro_0061	-	ABC transporter related
62	 57.47	0	72790..73398	+	202	71905704	-	Daro_0062	-	biopolymer transport protein TolA
63	 59.18	0	73412..74626	+	404	71905705	-	Daro_0063	-	metal-dependent phosphohydrolase
64	 60.21	0	74598..75635	-	345	71905706	-	Daro_0064	-	A/G-specific DNA-adenine glycosylase
65	 59.48	0	75700..76200	+	166	71905707	-	Daro_0065	-	flavin reductase-like, FMN-binding
66	 57.98	0	82138..82770	-	210	71905708	-	Daro_0066	-	peptidase S16, lon N-terminal
67	 63.56	0	82772..83383	-	203	71905709	-	Daro_0067	-	aromatic acid decarboxylase
68	 64.78	+1	83383..83913	-	176	71905710	-	Daro_0068	-	heptaprenyl diphosphate synthase component I
69	 65.33	+1	83894..84268	-	124	71905711	-	Daro_0069	-	hypothetical protein
70	 58.28	0	84268..85125	-	285	71905712	-	Daro_0070	-	hypothetical protein
71	 62.39	0	85185..86354	+	389	71905713	-	Daro_0071	-	peptidase M20D, amidohydrolase
72	 63.31	0	87027..87800	+	257	71905714	-	Daro_0072	-	hypothetical protein
73	 60.30	0	87805..88464	+	219	71905715	-	Daro_0073	-	hypothetical protein
74	 64.78	+1	88541..92146	+	1201	71905716	-	Daro_0074	-	allophanate hydrolase subunit 2
75	 66.44	+1	92156..93958	+	600	71905717	-	Daro_0075	-	amidase
76	 61.18	0	94027..94482	-	151	71905718	-	Daro_0076	-	CopG family transcriptional regulator
77	 61.67	0	94510..95871	-	453	71905719	-	Daro_0077	-	L-glutamine synthetase
78	 66.80	+1	95911..96669	-	252	71905720	-	Daro_0078	-	creatininase
79	 62.99	0	96674..97597	-	307	71905721	-	Daro_0079	-	ABC transporter related
80	 62.70	0	97608..98564	-	318	71905722	-	Daro_0080	-	binding-protein dependent transport system inner membrane protein
81	 60.56	0	98595..99593	-	332	71905723	-	Daro_0081	-	ABC transport system substrate-binding protein
82	 63.04	0	99954..100256	-	100	71905724	-	Daro_0082	-	hypothetical protein
83	 60.77	0	100399..101313	-	304	71905725	-	Daro_0083	-	Beta-lactamase-like
84	 57.14	0	101482..101691	-	69	71905726	-	Daro_0084	-	hypothetical protein
85	 60.51	0	101691..102680	-	329	71905727	-	Daro_0085	-	hypothetical protein
86	 59.05	0	102677..103582	-	301	71905728	-	Daro_0086	-	hydroxymethylglutaryl-CoA lyase
87	 62.28	0	103668..104351	-	227	71905729	-	Daro_0087	-	Short-chain dehydrogenase/reductase SDR
88	 61.27	0	104548..105177	-	209	71905730	-	Daro_0088	-	hypothetical protein
89	 64.72	+1	105215..107215	-	666	71905731	-	Daro_0089	-	3-methylcrotonoyl-CoA carboxylase, alpha subunit
90	 65.27	+1	107219..108004	-	261	71905732	-	Daro_0090	-	enoyl-CoA hydratase
91	 62.30	0	108017..108634	-	205	71905733	-	Daro_0091	-	negative transcriptional regulator
92	 63.50	0	108638..110245	-	535	71905734	-	Daro_0092	-	carboxyl transferase
93	 64.50	+1	110302..110901	-	199	71905735	-	Daro_0093	-	hypothetical protein
94	 63.37	0	110924..111529	-	201	71905736	-	Daro_0094	-	DSBA oxidoreductase
95	 50.49	-2	111562..112383	-	273	71905737	-	Daro_0095	-	hypothetical protein
96	 62.53	0	112459..113595	-	378	71905738	-	Daro_0096	-	Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal
97	 64.92	+1	113592..114506	-	304	71905739	-	Daro_0097	-	hypothetical protein
98	 66.16	+1	114507..115697	-	396	71905740	-	Daro_0098	-	thiolase
99	 62.03	0	115726..116889	-	387	71905741	-	Daro_0099	-	GCN5-related N-acetyltransferase:carbonic anhydrase
100	 62.23	0	116928..118100	-	390	71905742	-	Daro_0100	-	isovaleryl-CoA dehydrogenase
59.34	MEAN

4.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.