IslandPath Analysis: Rhodobacter sphaeroides ATCC 17029



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.83   STD DEV: 4.33
Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequence - 1..1219053
1052 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.25	-1	444..941	+	165	126463753	-	Rsph17029_2993	-	bacterioferritin
2	 71.45	0	1624..2730	+	368	126463754	-	Rsph17029_2994	-	glycosyl transferase, group 1
3	 65.85	0	2737..4209	-	490	126463755	-	Rsph17029_2995	-	diguanylate cyclase
4	 68.67	0	4526..5770	+	414	126463756	-	Rsph17029_2996	-	hypothetical protein
5	 68.57	0	5780..8506	-	908	126463757	-	Rsph17029_2997	-	methionine synthase
6	 69.72	0	8503..9582	-	359	126463758	-	Rsph17029_2998	-	methionine synthase
7	 69.74	0	9857..10735	+	292	126463759	-	Rsph17029_2999	-	hypothetical protein
8	 72.32	0	10732..11775	+	347	126463760	-	Rsph17029_3000	-	lipocalin-related protein
9	 74.36	+1	12127..12360	+	77	126463761	-	Rsph17029_3001	-	hypothetical protein
10	 74.56	+1	12750..13724	+	324	126463762	-	Rsph17029_3003	-	phage late control D family protein
11	 68.84	0	13784..14749	+	321	126463763	-	Rsph17029_3004	-	D12 class N6 adenine-specific DNA methyltransferase
12	 54.83	-2	15035..16090	+	351	126463764	-	Rsph17029_3005	-	hypothetical protein
13	 51.65	-2	16135..16467	+	110	126463765	-	Rsph17029_3006	-	hypothetical protein
14	 53.97	-2	16464..17030	+	188	126463766	-	Rsph17029_3007	-	hypothetical protein
15	 65.87	0	17433..17936	+	167	126463767	-	Rsph17029_3008	-	hypothetical protein
16	 73.97	+1	17964..18785	+	273	126463768	-	Rsph17029_3009	-	pyrroline-5-carboxylate reductase
17	 66.67	0	18782..19114	+	110	126463769	-	Rsph17029_3010	-	export-related chaperone CsaA
18	 72.78	0	19111..20058	+	315	126463770	-	Rsph17029_3011	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
19	 70.27	0	20267..20932	+	221	126463771	-	Rsph17029_3012	-	hypothetical protein
20	 72.95	0	21233..22552	-	439	126463772	-	Rsph17029_3013	-	diguanylate cyclase
21	 68.59	0	22684..22839	-	51	126463773	-	Rsph17029_3014	-	hypothetical protein
22	 75.42	+1	22836..24194	-	452	126463774	-	Rsph17029_3015	-	amidase
23	 64.77	0	24181..25602	-	473	126463775	-	Rsph17029_3016	-	TRAP C4-dicarboxylate transport system permease DctM subunit
24	 64.75	0	25784..26356	-	190	126463776	-	Rsph17029_3017	-	tripartite ATP-independent periplasmic transporter DctQ
25	 64.82	0	26408..27547	-	379	126463777	-	Rsph17029_3018	-	TRAP dicarboxylate transporter- DctP subunit
26	 68.74	0	27725..28930	-	401	126463778	-	Rsph17029_3019	-	hypothetical protein
27	 70.80	0	28932..29633	-	233	126463779	-	Rsph17029_3020	-	ABC transporter related
28	 73.59	+1	29630..30886	-	418	126463780	-	Rsph17029_3021	-	RND family efflux transporter MFP subunit
29	 65.99	0	30974..31417	-	147	126463781	-	Rsph17029_3022	-	3-dehydroquinate dehydratase
30	 73.22	+1	31597..32481	+	294	126463782	-	Rsph17029_3023	-	glutathione S-transferase family protein
31	 76.63	+1	32545..33156	+	203	126463783	-	Rsph17029_3024	-	hypothetical protein
32	 76.04	+1	33156..33806	+	216	126463784	-	Rsph17029_3025	-	hypothetical protein
33	 69.37	0	34042..34707	+	221	126463785	-	Rsph17029_3026	-	hypothetical protein
34	 72.00	0	34788..35762	-	324	126463786	-	Rsph17029_3027	-	alcohol dehydrogenase
35	 64.99	0	35759..36115	-	118	126463787	-	Rsph17029_3028	-	alkylhydroperoxidase
36	 66.67	0	36202..37020	-	272	126463788	-	Rsph17029_3029	-	cyclase family protein
37	 67.61	0	37191..38354	-	387	126463789	-	Rsph17029_3030	-	mandelate racemase/muconate lactonizing protein
38	 69.20	0	38432..39379	-	315	126463790	-	Rsph17029_3031	-	LysR family transcriptional regulator
39	 65.41	0	39640..40596	+	318	126463791	-	Rsph17029_3032	-	hypothetical protein
40	 69.85	0	40606..42582	+	658	126463792	-	Rsph17029_3033	-	hypothetical protein
41	 70.73	0	42597..43679	+	360	126463793	-	Rsph17029_3034	-	tartrate dehydrogenase
42	 68.34	0	43690..44763	+	357	126463794	-	Rsph17029_3035	-	tartrate dehydrogenase
43	 74.46	+1	44936..45718	-	260	126463795	-	Rsph17029_3036	-	ABC transporter related
44	 73.62	+1	45715..46749	-	344	126463796	-	Rsph17029_3037	-	transport system permease protein
45	 69.85	0	46746..47750	-	334	126463797	-	Rsph17029_3038	-	periplasmic binding protein
46	 66.54	0	48221..49015	-	264	126463798	-	Rsph17029_3039	-	binding-protein-dependent transport systems inner membrane component
47	 67.93	0	49026..49898	-	290	126463799	-	Rsph17029_3040	-	binding-protein-dependent transport systems inner membrane component
48	 71.22	0	49895..51013	-	372	126463800	-	Rsph17029_3041	-	ABC transporter related
49	 67.53	0	51015..52058	-	347	126463801	-	Rsph17029_3042	-	extracellular solute-binding protein
50	 69.57	0	52132..52785	-	217	126463802	-	Rsph17029_3043	-	dimethylmenaquinone methyltransferase
51	 67.54	0	52795..53598	-	267	126463803	-	Rsph17029_3044	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
52	 70.37	0	53688..54578	-	296	126463804	-	Rsph17029_3045	-	LysR family transcriptional regulator
53	 70.34	0	54802..56490	+	562	126463805	-	Rsph17029_3046	-	diguanylate cyclase
54	 71.71	0	56506..59142	+	878	126463806	-	Rsph17029_3047	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
55	 71.53	0	59149..59991	-	280	126463807	-	Rsph17029_3048	-	hypothetical protein
56	 74.32	+1	60243..61340	+	365	126463808	-	Rsph17029_3049	-	hypothetical protein
57	 67.78	0	61373..62092	+	239	126463809	-	Rsph17029_3050	-	GntR domain-containing protein
58	 70.01	0	62137..63123	-	328	126463810	-	Rsph17029_3051	-	4-hydroxythreonine-4-phosphate dehydrogenase
59	 71.82	0	63149..64099	-	316	126463811	-	Rsph17029_3052	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
60	 68.59	0	64096..64980	-	294	126463812	-	Rsph17029_3053	-	dihydrodipicolinate synthetase
61	 68.94	0	64984..66480	-	498	126463813	-	Rsph17029_3054	-	hypothetical protein
62	 69.18	0	66541..67494	-	317	126463814	-	Rsph17029_3055	-	hypothetical protein
63	 67.31	0	67530..67994	-	154	126463815	-	Rsph17029_3056	-	TRAP-T family transporter small inner membrane subunit
64	 72.19	0	68255..69376	+	373	126463816	-	Rsph17029_3057	-	iron-containing alcohol dehydrogenase
65	 72.78	0	69424..70224	-	266	126463817	-	Rsph17029_3058	-	ABC transporter related
66	 73.29	+1	70221..71261	-	346	126463818	-	Rsph17029_3059	-	transport system permease protein
67	 74.98	+1	71258..72436	-	392	126463819	-	Rsph17029_3060	-	transport system permease protein
68	 70.55	0	72433..73410	-	325	126463820	-	Rsph17029_3061	-	periplasmic binding protein
69	 67.04	0	73737..75884	+	715	126463821	-	Rsph17029_3062	-	TonB-dependent siderophore receptor
70	 71.12	0	75998..76918	-	306	126463822	-	Rsph17029_3063	-	helix-turn-helix domain-containing protein
71	 65.11	0	77717..78295	+	192	126463823	-	Rsph17029_3064	-	uncharacterized peroxidase-related enzyme
72	 68.13	0	78516..80090	+	524	126463824	-	Rsph17029_3065	-	methyl-accepting chemotaxis sensory transducer
73	 70.66	0	80087..80662	+	191	126463825	-	Rsph17029_3066	-	hypothetical protein
74	 70.12	0	80674..81252	+	192	126463826	-	Rsph17029_3067	-	hypothetical protein
75	 67.32	0	81431..82198	-	255	126463827	-	Rsph17029_3068	-	exodeoxyribonuclease III Xth
76	 73.39	+1	82380..83033	+	217	126463828	-	Rsph17029_3069	-	short-chain dehydrogenase/reductase SDR
77	 71.33	0	83146..83724	-	192	126463829	-	Rsph17029_3070	-	hypothetical protein
78	 67.33	0	83721..84923	-	400	126463830	-	Rsph17029_3071	-	glutathionylspermidine synthase
79	 69.51	0	85376..87100	+	574	126463831	-	Rsph17029_3072	-	heme peroxidase
80	 72.49	0	87151..89109	+	652	126463832	-	Rsph17029_3073	-	hypothetical protein
81	 69.60	0	89081..90919	+	612	126463833	-	Rsph17029_3074	-	peptidase C14, caspase catalytic subunit p20
82	 72.70	0	91007..91669	+	220	126463834	-	Rsph17029_3075	-	two component transcriptional regulator
83	 74.28	+1	91666..93018	+	450	126463835	-	Rsph17029_3076	-	integral membrane sensor signal transduction histidine kinase
84	 71.47	0	93196..94755	+	519	126463836	-	Rsph17029_3077	-	methyl-accepting chemotaxis sensory transducer
85	 69.41	0	94820..95293	+	157	126463837	-	Rsph17029_3078	-	CopG family transcriptional regulator
86	 75.61	+1	95584..95952	-	122	126463838	-	Rsph17029_3079	-	hypothetical protein
87	 66.97	0	96053..96385	+	110	126463839	-	Rsph17029_3080	-	putative DNA-binding protein
88	 72.56	0	96472..97353	-	293	126463840	-	Rsph17029_3081	-	LysR family transcriptional regulator
89	 70.11	0	97473..98693	+	406	126463841	-	Rsph17029_3082	-	aspartate aminotransferase
90	 74.18	+1	98690..99115	+	141	126463842	-	Rsph17029_3083	-	endoribonuclease L-PSP
91	 69.15	0	99164..100372	+	402	126463843	-	Rsph17029_3084	-	aminotransferase, class I and II
92	 72.01	0	100438..101223	+	261	126463844	-	Rsph17029_3085	-	short-chain dehydrogenase/reductase SDR
93	 71.65	0	101239..101961	+	240	126463845	-	Rsph17029_3086	-	hypothetical protein
94	 71.76	0	102056..102997	+	313	126463846	-	Rsph17029_3087	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
95	 73.40	+1	103225..104190	-	321	126463847	-	Rsph17029_3088	-	acetamidase/formamidase
96	 73.92	+1	104202..105386	-	394	126463848	-	Rsph17029_3089	-	creatinase
97	 70.75	0	105391..106026	-	211	126463849	-	Rsph17029_3090	-	GntR family transcriptional regulator
98	 73.54	+1	106023..107303	-	426	126463850	-	Rsph17029_3091	-	allantoate amidohydrolase
99	 75.30	+1	107300..108295	-	331	126463851	-	Rsph17029_3092	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
100	 69.83	0	108292..108954	-	220	126463852	-	Rsph17029_3093	-	GntR family transcriptional regulator
68.83	MEAN

4.33	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.