IslandPath Analysis: Clostridium botulinum B str. Eklund 17B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.99   STD DEV: 3.63
Clostridium botulinum B str. Eklund 17B, complete genome - 1..3800327
3473 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.59	0	175..1545	+	456	187935721	dnaA	CLL_A0001	-	chromosomal replication initiator protein DnaA
2	 26.16	0	1806..2906	+	366	187933007	dnaN	CLL_A0002	-	DNA polymerase III, beta subunit
3	 26.57	0	2945..3151	+	68	187934192	yaaA	CLL_A0003	-	S4 domain protein YaaA
4	 24.49	0	3223..4308	+	361	187932670	-	CLL_A0004	-	DNA replication and repair protein RecF
5	 26.44	0	4323..4583	+	86	187933074	-	CLL_A0005	-	hypothetical protein
6	 30.45	0	4619..6526	+	635	187934052	gyrB	CLL_A0006	-	DNA gyrase, B subunit
7	 29.06	0	6549..9098	+	849	187934554	gyrA	CLL_A0007	-	DNA gyrase, A subunit
8	 20.44	-2	14679..15182	+	167	187935109	-	CLL_A0014	-	hypothetical protein
9	 24.76	0	15223..15735	+	170	187934116	-	CLL_A0015	-	transcriptional regulator
10	 26.01	0	15749..17140	+	463	187934028	-	CLL_A0016	-	FAD-dependent oxidoreductase
11	 25.32	0	17159..17395	+	78	187935589	-	CLL_A0017	-	hypothetical protein
12	 29.89	0	17710..18987	+	425	187934733	serS	CLL_A0018	-	seryl-tRNA synthetase
13	 24.28	-1	20244..20762	+	172	187934457	-	CLL_A0023	-	GCN5-related N-acetyltransferase
14	 27.12	0	20791..24249	+	1152	187932856	addB	CLL_A0024	-	ATP-dependent nuclease subunit B
15	 26.50	0	24275..28006	+	1243	187935208	addA	CLL_A0025	-	recombination helicase AddA
16	 23.00	-1	28288..29439	-	383	187934401	-	CLL_A0026	-	ErfK/YbiS/YcfS/YnhG family protein
17	 22.10	-1	29595..30404	+	269	187934016	-	CLL_A0027	-	hypothetical protein
18	 29.83	0	30462..31631	-	389	187935540	-	CLL_A0028	-	sodium:dicarboxylate symporter family protein
19	 23.30	-1	31969..32865	+	298	187934967	-	CLL_A0029	-	sensory box histidine kinase
20	 27.71	0	33191..34345	-	384	187932470	-	CLL_A0031	-	DNA integration/recombination/invertion protein
21	 26.67	0	34346..34930	-	194	187933844	-	CLL_A0032	-	adenine-specific DNA methyltransferase
22	 24.16	-1	35125..35451	+	108	187934134	-	CLL_A0033	-	putative viral A-type inclusion protein
23	 24.30	-1	35747..37507	+	586	187935270	-	CLL_A0034	-	hypothetical protein
24	 21.52	-1	37765..38001	+	78	187932493	-	CLL_A0035	-	hypothetical protein
25	 30.30	0	38124..38354	+	76	187932862	-	CLL_A0036	-	hypothetical protein
26	 22.88	-1	38370..38522	+	50	187933629	-	CLL_A0037	-	hypothetical protein
27	 32.19	+1	38712..39938	+	408	187934144	-	CLL_A0038	-	phage portal protein
28	 33.15	+1	39901..40458	+	185	187932875	-	CLL_A0039	-	phage prohead protease, HK97 family
29	 32.84	+1	40460..41686	+	408	187933674	-	CLL_A0040	-	phage major capsid protein, HK97 family
30	 32.18	+1	41862..42122	+	86	187934888	-	CLL_A0041	-	putative DNA packaging protein
31	 27.44	0	42127..42669	+	180	187935699	-	CLL_A0042	-	prophage LambdaBa02, site-specific recombinase, phage integrase family
32	 33.33	+1	42839..43150	+	103	187935124	-	CLL_A0043	-	prophage LambdaBa04, Gp54
33	 28.70	0	43250..43594	+	114	187932685	-	CLL_A0044	-	hypothetical protein
34	 31.51	0	43594..45234	+	546	187933402	-	CLL_A0045	-	putative phage terminase, large subunit
35	 26.73	0	45277..45594	+	105	187934610	-	CLL_A0046	-	putative phage head-tail adaptor
36	 25.21	0	45612..46313	+	233	187935479	-	CLL_A0047	-	RNA polymerase sigma-F factor
37	 27.43	0	46314..46652	+	112	187933130	-	CLL_A0048	-	sigma-70, region 4 family
38	 23.07	-1	47083..48222	+	379	187933204	-	CLL_A0049	-	hypothetical protein
39	 27.72	0	48363..49253	-	296	187932700	psd	CLL_A0050	-	phosphatidylserine decarboxylase
40	 27.60	0	49414..49989	+	191	187934009	-	CLL_A0051	-	transcriptional regulator, TetR family
41	 31.89	+1	50301..52031	+	576	187932889	-	CLL_A0052	-	hydrogenase-1
42	 25.22	0	52291..53079	+	262	187933673	-	CLL_A0053	-	HAD-superfamily hydrolase
43	 31.08	0	53133..54728	-	531	187932894	-	CLL_A0054	-	ABC transporter, ATP-binding protein
44	 30.06	0	55218..56531	+	437	187935171	-	CLL_A0055	-	sodium:neurotransmitter symporter family protein
45	 27.78	0	56664..57311	-	215	187934459	-	CLL_A0056	-	hemolysin-3
46	 22.34	-1	57530..58111	+	193	187933225	-	CLL_A0057	-	hypothetical protein
47	 26.87	0	58112..59812	+	566	187932478	-	CLL_A0058	-	isopentenyl-diphosphate delta-isomerase
48	 24.08	-1	59901..60419	+	172	187935057	-	CLL_A0059	-	putative lipoprotein
49	 28.76	0	60692..62047	-	451	187934054	-	CLL_A0060	-	membrane protein
50	 26.37	0	62297..63991	+	564	187933061	-	CLL_A0061	-	methyl-accepting chemotaxis sensory transducer
51	 29.63	0	64352..65161	+	269	187935580	proB	CLL_A0062	-	glutamate 5-kinase
52	 31.49	0	65176..66420	+	414	187934564	proA	CLL_A0063	-	glutamate-5-semialdehyde dehydrogenase
53	 25.40	0	66522..66962	+	146	187933586	-	CLL_A0064	-	acetyltransferase
54	 23.87	-1	67148..67654	+	168	187932630	-	CLL_A0065	-	bacterial membrane flanked domain family
55	 22.17	-1	67845..69062	+	405	187935111	-	CLL_A0066	-	bacterial membrane flanked domain family
56	 28.02	0	69289..70059	+	256	187932564	-	CLL_A0067	-	short chain dehydrogenase
57	 26.08	0	70216..71028	+	270	187935134	-	CLL_A0068	-	HAD superfamily hydrolase
58	 26.34	0	71127..72584	+	485	187932726	-	CLL_A0069	-	methyl-accepting chemotaxis protein
59	 31.05	0	72952..74001	+	349	187933326	carA	CLL_A0070	-	carbamoyl-phosphate synthase, small subunit
60	 30.84	0	74016..77225	+	1069	187934720	carB	CLL_A0071	-	carbamoyl-phosphate synthase, large subunit
61	 27.39	0	77269..78378	-	369	187935260	-	CLL_A0072	-	HD-GYP hydrolase domain containing protein
62	 28.63	0	78671..80563	-	630	187933927	-	CLL_A0073	-	glutamine synthetase
63	 27.41	0	80881..81657	+	258	187934900	murI	CLL_A0074	-	glutamate racemase
64	 33.52	+1	81796..82320	+	174	187932397	-	CLL_A0075	-	peptidyl-prolyl cis-trans isomerase
65	 30.35	0	82501..82869	+	122	187933394	-	CLL_A0076	-	hypothetical protein
66	 27.50	0	82871..83539	+	222	187933619	-	CLL_A0077	-	DNA-binding protein
67	 30.41	0	83639..85483	+	614	187934074	-	CLL_A0078	-	CspB
68	 30.41	0	85553..86884	+	443	187935424	-	CLL_A0079	-	spore cortex-lytic enzyme SleC
69	 28.59	0	86925..87830	-	301	187934625	-	CLL_A0080	-	radical SAM domain protein
70	 26.72	0	87980..89038	-	352	187933911	-	CLL_A0081	-	transporter
71	 26.80	0	89173..90243	+	356	187933173	-	CLL_A0082	-	putative lipoprotein
72	 30.67	0	90336..91274	+	312	187932373	-	CLL_A0083	-	radical SAM protein, family
73	 26.64	0	91275..91991	+	238	187934975	-	CLL_A0084	-	probable 2-phosphosulfolactate phosphatase
74	 29.30	0	92015..93205	-	396	187933779	-	CLL_A0085	-	PUA domain containing protein
75	 29.52	0	93643..93852	-	69	187932813	-	CLL_A0086	-	hypothetical protein
76	 25.44	0	94170..94853	+	227	187934991	-	CLL_A0087	-	DNA-binding response regulator
77	 25.94	0	94859..96130	+	423	187934447	-	CLL_A0088	-	sensor histidine kinase
78	 26.64	0	96428..97114	+	228	187933073	-	CLL_A0089	-	VTC domain superfamily
79	 27.25	0	97149..97838	+	229	187932535	-	CLL_A0090	-	tubulin/FtsZ, GTPase
80	 28.73	0	97955..100084	+	709	187934673	-	CLL_A0091	-	CotH protein
81	 30.30	0	100377..102356	+	659	187933696	-	CLL_A0092	-	2', 3'-cyclic nucleotide 2'-phosphodiesterase
82	 31.51	0	103159..106287	+	1042	187932895	ileS	CLL_A0093	-	isoleucyl-tRNA synthetase
83	 28.53	0	106394..107392	+	332	187935410	-	CLL_A0094	-	catabolite control protein A
84	 22.54	-1	107674..108099	+	141	187933565	-	CLL_A0095	-	hypothetical protein
85	 28.62	0	108224..109603	+	459	187932573	-	CLL_A0096	-	mate efflux family protein
86	 24.19	-1	109655..109840	-	61	187932348	-	CLL_A0097	-	hypothetical protein
87	 30.03	0	109950..110525	+	191	187935274	-	CLL_A0098	-	hypothetical protein
88	 29.36	0	110541..111068	+	175	187934806	-	CLL_A0099	-	hypothetical protein
89	 24.62	0	111172..111504	+	110	187933325	-	CLL_A0100	-	hypothetical protein
90	 26.19	0	111690..113300	+	536	187933665	-	CLL_A0101	-	ABC1 family protein kinase
91	 32.46	+1	113901..115619	+	572	187932898	-	CLL_A0102	-	Na+/H+ antiporter family family
92	 28.63	0	115847..117631	+	594	187934484	-	CLL_A0103	-	Xaa-Pro aminopeptidase 1
93	 28.68	0	117705..117833	-	42	187935258	-	CLL_A0104	-	hypothetical protein
94	 28.57	0	117841..118092	+	83	187932878	-	CLL_A0105	-	hypothetical protein
95	 26.21	0	118299..119702	+	467	187933710	-	CLL_A0106	-	AAA superfamily ATPase with N- receiver domain
96	 29.11	0	119829..120752	+	307	187934901	-	CLL_A0107	-	hydrolase, alpha/beta fold family
97	 37.87	+2	121218..121922	+	234	187934211	-	CLL_A0108	-	glycerol uptake facilitator protein
98	 33.33	+1	122016..123014	+	332	187934947	dhaK	CLL_A0109	-	dihydroxyacetone kinase, DhaK subunit
99	 30.83	0	123105..123743	+	212	187932757	-	CLL_A0110	-	dihydroxyacetone kinase, L subunit
100	 33.08	+1	123746..124135	+	129	187933499	-	CLL_A0111	-	dihydroxyacetone kinase, phosphotransfer subunit
27.99	MEAN

3.63	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.