IslandPath Analysis: Thermus thermophilus HB27



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.36   STD DEV: 3.27
Thermus thermophilus HB27, complete genome - 1..1894877
1982 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 67.49	0	74..1171	-	365	46198309	-	TTC0001	-	hypothetical protein
2	 71.47	0	1281..2051	+	256	46198310	-	TTC0002	-	dehydrogenase
3	 72.01	0	2097..2639	-	180	46198311	-	TTC0003	-	hypothetical protein
4	 73.86	+1	2666..3985	+	439	46198312	-	TTC0004	-	hypothetical protein
5	 67.26	0	3973..4311	+	112	46198313	-	TTC0005	-	hypothetical protein
6	 71.00	0	4359..6134	+	591	46198314	vdcC	TTC0006	-	vdcC protein
7	 68.97	0	6172..6822	+	216	46198315	-	TTC0007	-	hypothetical protein
8	 72.31	0	6969..7517	-	182	46198316	-	TTC0008	-	O-sialoglycoprotein endopeptidase
9	 66.98	0	7480..8745	+	421	46198317	-	TTC0009	-	sugar ABC transporter, permease protein
10	 69.93	0	8735..9928	+	397	46198318	-	TTC0010	-	sugar ABC transporter, permease protein
11	 66.75	0	9984..11237	+	417	46198319	-	TTC0011	-	sugar ABC transporter, periplasmic sugar-binding protein, putative
12	 69.78	0	11299..13161	+	620	46198320	-	TTC0012	-	tungsten-containing aldehyde ferredoxin oxidoreductase
13	 72.44	0	13132..13806	-	224	46198321	-	TTC0013	-	hypothetical protein
14	 68.97	0	13870..14346	+	158	46198322	-	TTC0014	-	hypothetical protein
15	 69.92	0	14362..14607	+	81	46198323	-	TTC0015	-	hypothetical protein
16	 67.96	0	14595..15446	+	283	46198324	-	TTC0016	-	prolipoprotein diacylglyceryl transferase
17	 70.53	0	15448..16818	+	456	46198325	-	TTC0017	-	UDP-N-acetylglucosamine pyrophosphorylase
18	 67.12	0	16863..17084	+	73	46198326	tatA	TTC0018	-	Sec-independent protein translocase protein tatA
19	 66.53	0	17081..17821	+	246	46198327	tatC	TTC0019	-	Sec-independent protein translocase protein tatC
20	 67.23	0	17855..18922	+	355	46198328	-	TTC0020	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
21	 71.37	0	18925..19689	+	254	46198329	-	TTC0021	-	ferredoxin
22	 68.85	0	19686..19868	+	60	46198330	-	TTC0022	-	hypothetical protein
23	 70.76	0	19892..21529	+	545	46198331	-	TTC0023	-	putative FAD-binding dehydrogenase
24	 70.23	0	21534..21926	+	130	46198332	coA	TTC0024	-	methylmalonyl-CoA epimerase
25	 70.21	0	21926..22264	+	112	46198333	-	TTC0025	-	hypothetical protein
26	 70.47	0	22218..22901	-	227	46198334	-	TTC0026	-	cehydrogenase
27	 71.62	0	22906..23895	-	329	46198335	-	TTC0027	-	hypothetical protein
28	 70.06	0	23892..26366	-	824	46198336	-	TTC0028	-	hypothetical protein
29	 72.22	0	26363..27406	-	347	46198337	-	TTC0029	-	hypothetical protein
30	 72.50	0	27403..28413	-	336	46198338	-	TTC0030	-	hypothetical protein
31	 72.66	+1	28469..28885	-	138	46198339	-	TTC0031	-	hypothetical protein
32	 71.98	0	29053..30087	-	344	46198340	-	TTC0032	-	dehydrogenase
33	 70.74	0	30084..30476	-	130	46198341	-	TTC0033	-	hypothetical protein
34	 71.10	0	30522..30950	+	142	46198342	-	TTC0034	-	hypothetical protein
35	 68.39	0	30936..32792	-	618	46198343	ftsH	TTC0035	-	cell division protein ftsH
36	 73.73	+1	32844..34217	+	457	46198344	-	TTC0036	-	hypothetical protein
37	 71.80	0	34238..35269	-	343	46198345	-	TTC0037	-	hypothetical protein
38	 69.63	0	35266..36276	-	336	46198346	ruvB	TTC0038	-	Holliday junction DNA helicase B
39	 70.29	0	36197..37051	+	284	46198347	-	TTC0039	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
40	 72.31	0	37123..38025	+	300	46198348	-	TTC0040	-	ribosomal large subunit pseudouridine synthase D
41	 66.02	-1	38022..38948	+	308	46198349	-	TTC0041	-	methyltransferase
42	 62.89	-1	39291..39608	+	105	46198350	-	TTC0042	-	hypothetical protein
43	 69.18	0	39582..40775	-	397	46198351	-	TTC0043	-	alpha-aminodipate aminotransferase
44	 70.56	0	40871..42001	-	376	46198352	-	TTC0044	-	dNTP triphosphohydrolase
45	 70.66	0	42001..43227	-	408	46198353	-	TTC0045	-	3-oxoacyl-[acyl-carrier-protein] synthase
46	 61.32	-2	43347..43589	-	80	46198354	-	TTC0046	-	acyl carrier protein
47	 69.51	0	43622..44359	-	245	46198355	-	TTC0047	-	3-oxoacyl-[acyl-carrier protein] reductase
48	 70.15	0	44352..45269	-	305	46198356	-	TTC0048	-	malonyl-CoA-[acyl-carrier-protein] transacylase
49	 69.45	0	45269..46237	-	322	46198357	-	TTC0049	-	3-oxoacyl-[acyl-carrier-protein] synthase III
50	 69.40	0	46402..46584	-	60	46198358	rpmF	TTC0050	-	50S ribosomal protein L32
51	 68.72	0	46644..47180	-	178	46198359	-	TTC0051	-	hypothetical protein
52	 68.54	0	47269..47748	-	159	46198360	-	TTC0052	-	nitrilotriacetate monooxygenase component B
53	 72.55	0	47772..49658	-	628	46198361	-	TTC0053	-	hypothetical protein
54	 69.65	0	49668..50372	-	234	46198362	-	TTC0054	-	UDP-N-acetyl-D-mannosaminuronic acid transferase
55	 72.94	+1	50360..51076	-	238	46198363	-	TTC0055	-	hypothetical protein
56	 70.51	0	51104..52039	+	311	46198364	-	TTC0056	-	thiamin-monophosphate kinase
57	 70.23	0	52176..52793	+	205	46198365	-	TTC0057	-	NADH dehydrogenase
58	 71.67	0	52790..53149	-	119	46198366	-	TTC0058	-	hypothetical protein
59	 69.26	0	53184..53492	+	102	46198367	-	TTC0059	-	hypothetical protein
60	 69.54	0	53514..54557	+	347	46198368	-	TTC0060	-	putative histidinol-phosphate aminotransferase protein
61	 71.45	0	54550..55134	+	194	46198369	-	TTC0061	-	imidazoleglycerol-phosphate dehydratase
62	 69.51	0	55250..55846	+	198	46198370	hisH	TTC0062	-	imidazole glycerol phosphate synthase subunit HisH
63	 72.42	0	55817..56737	-	306	46198371	-	TTC0063	-	sugar kinase
64	 68.76	0	56882..58363	+	493	46198372	-	TTC0064	-	inosine-5'-monophosphate dehydrogenase
65	 67.10	0	58360..58590	-	76	46198373	-	TTC0065	-	hypothetical protein
66	 71.81	0	58631..59116	+	161	46198374	-	TTC0066	-	hypothetical protein
67	 67.37	0	59061..59486	-	141	46198375	-	TTC0067	-	disulfide bond formation protein B
68	 71.37	0	59620..60534	-	304	46198376	tsY	TTC0068	-	signal recognition particle receptor FtsY
69	 71.07	0	60534..61055	-	173	46198377	-	TTC0069	-	hypothetical protein
70	 67.73	0	60991..62397	-	468	46198378	-	TTC0070	-	glutamyl-tRNA synthetase
71	 66.80	0	62452..63180	+	242	46198379	-	TTC0071	-	ABC transporter ATP-binding protein
72	 74.78	+1	63183..64526	+	447	46198380	-	TTC0072	-	hypothetical protein
73	 74.78	+1	63819..65321	-	500	46198381	-	TTC0073	-	methyltransferase
74	 71.05	0	65334..65903	-	189	46198382	-	TTC0074	-	DNA/RNA-binding protein
75	 67.29	0	65913..67205	-	430	46198383	-	TTC0075	-	hypothetical protein
76	 70.28	0	67202..67450	-	82	46198384	-	TTC0076	-	alpha-hemolysin
77	 67.88	0	67455..68033	-	192	46198385	-	TTC0077	-	ribonuclease P protein subunit
78	 66.54	0	68107..68868	+	253	46198386	livG	TTC0078	-	branched-chain amino acid transport ATP-binding protein livG
79	 67.29	0	68865..70799	+	644	46198387	-	TTC0079	-	long-chain-fatty-acid-CoA ligase
80	 67.90	0	70796..71689	+	297	46198388	livH	TTC0080	-	branched-chain amino acid transport system permease protein livH
81	 65.76	-1	71652..72752	+	366	46198389	livM	TTC0081	-	branched-chain amino acid transport system permease protein livM
82	 66.25	0	72792..73988	+	398	46198390	-	TTC0082	-	leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
83	 67.27	0	74033..74866	+	277	46198391	livF	TTC0083	-	branched-chain amino acid transport ATP-binding protein livF
84	 72.06	0	74933..75673	+	246	46198392	mntA	TTC0084	-	manganese transport system ATP-binding protein mntA
85	 70.01	0	75666..76472	+	268	46198393	mntB	TTC0085	-	manganese transport system membrane protein mntB
86	 71.56	0	76497..76946	+	149	46198394	-	TTC0086	-	rrf2 family protein
87	 73.60	+1	76962..78086	+	374	46198395	-	TTC0087	-	cysteine desulfhydrase/selenocysteine lyase
88	 73.44	+1	78119..79402	+	427	46198396	-	TTC0088	-	3-phosphoshikimate 1-carboxyvinyltransferase
89	 74.32	+1	79387..80013	+	208	46198397	-	TTC0089	-	cytidylate kinase
90	 65.50	-1	80017..80790	+	257	46198398	-	TTC0090	-	hypothetical protein
91	 67.15	0	80754..81164	+	136	46198399	-	TTC0091	-	hypothetical protein
92	 68.65	0	81161..81865	+	234	46198400	-	TTC0092	-	putative dihydropteridine reductase
93	 65.10	-1	82076..82267	+	63	46198401	-	TTC0093	-	transmembrane protein
94	 70.43	0	82264..82794	+	176	46198402	-	TTC0094	-	cysteinyl-tRNA synthetase
95	 74.19	+1	83333..83518	+	61	46198403	-	TTC0095	-	hypothetical protein
96	 68.25	0	83829..84836	-	335	46198404	-	TTC0096	-	thioredoxin reductase
97	 70.93	0	84869..85900	-	343	46198405	-	TTC0097	-	alcohol dehydrogenase
98	 63.69	-1	86014..87762	+	582	46198406	appA	TTC0098	-	oligopeptide-binding protein appA
99	 64.06	-1	87804..88802	+	332	46198407	appB	TTC0099	-	oligopeptide transport system permease protein appB
100	 68.00	0	88810..90156	+	448	46198408	appC	TTC0100	-	oligopeptide transport system permease protein appC
69.36	MEAN

3.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.