IslandPath Analysis: Legionella pneumophila str. Lens



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.75   STD DEV: 3.24
Legionella pneumophila str. Lens, complete genome - 1..3345687
2878 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.60	0	204..1562	+	452	54292965	dnaA	lpl0001	-	chromosomal replication initiator protein DnaA
2	 34.51	-1	1576..2679	+	367	54292966	dnaN	lpl0002	-	DNA polymerase III, beta chain
3	 35.40	-1	2676..3737	+	353	54292967	recF	lpl0003	-	RecF recombinational DNA repair ATPase
4	 39.54	0	4034..6451	+	805	54292968	gyrB	lpl0004	-	DNA gyrase, subunit B (type II topoisomerase)
5	 38.89	0	6796..7839	-	347	54292969	-	lpl0005	-	hypothetical protein
6	 39.04	0	7842..9734	-	630	54292970	speA	lpl0006	-	arginine decarboxylase
7	 42.67	+1	9754..10599	-	281	54292971	-	lpl0007	-	hypothetical protein
8	 38.73	0	11140..12399	-	419	54292972	-	lpl0008	-	hypothetical protein
9	 38.37	0	12587..12844	+	85	54292973	-	lpl0009	-	hypothetical protein
10	 42.73	+1	12872..14116	+	414	54292974	-	lpl0010	-	hypothetical protein
11	 37.15	0	14221..14691	-	156	54292975	-	lpl0011	-	hypothetical protein
12	 41.76	0	14858..16435	-	525	54292976	-	lpl0012	-	hypothetical protein
13	 41.37	0	16581..17414	+	277	54292977	-	lpl0013	-	hypothetical protein
14	 39.87	0	17947..19062	+	371	54292978	-	lpl0014	-	hypothetical protein
15	 36.13	0	19163..20236	+	357	54292979	-	lpl0015	-	hypothetical protein
16	 34.73	-1	20211..21143	+	310	54292980	-	lpl0016	-	hypothetical protein
17	 39.07	0	21128..22033	+	301	54292981	-	lpl0017	-	hypothetical protein
18	 36.58	0	22017..23402	+	461	54292982	-	lpl0018	-	hypothetical protein
19	 33.54	-1	23436..24410	-	324	54292983	-	lpl0019	-	hypothetical protein
20	 37.21	0	24648..26324	+	558	54292984	-	lpl0020	-	hypothetical protein
21	 37.72	0	26545..27456	+	303	54292985	-	lpl0021	-	hypothetical protein
22	 38.33	0	27647..28126	+	159	54292986	-	lpl0022	-	hypothetical protein
23	 39.36	0	28123..30246	+	707	54292987	-	lpl0023	-	23S rRNA m(2)G2445 methyltransferase
24	 38.49	0	30316..30858	-	180	54292988	-	lpl0024	-	hypothetical protein
25	 40.61	0	31005..31430	-	141	54292989	hbp	lpl0025	-	hemin binding protein
26	 44.21	+1	31570..32130	-	186	54292990	rcp	lpl0026	-	palmitoyl transferase for Lipid A
27	 40.52	0	32290..33681	+	463	54292991	-	lpl0027	-	hypothetical protein
28	 42.27	+1	33691..34686	-	331	54292992	-	lpl0028	-	hypothetical protein
29	 43.15	+1	34703..35344	-	213	54292993	-	lpl0029	-	hypothetical protein
30	 36.23	0	35567..38497	+	976	54292994	-	lpl0030	-	hypothetical protein
31	 38.72	0	38608..39498	-	296	54292995	-	lpl0031	-	hypothetical protein
32	 38.86	0	39557..40750	-	397	54292996	-	lpl0032	-	hypothetical protein
33	 40.84	0	40813..41838	-	341	54292997	-	lpl0033	-	hypothetical protein
34	 37.40	0	42102..42863	+	253	54292998	-	lpl0034	-	hypothetical protein
35	 34.73	-1	42991..43347	+	118	54292999	-	lpl0035	-	hypothetical protein
36	 38.31	0	43406..44128	-	240	54293000	-	lpl0036	-	hypothetical protein
37	 34.81	-1	44342..45085	-	247	54293001	-	lpl0037	-	hypothetical protein
38	 39.39	0	45262..46764	-	500	54293002	-	lpl0038	-	hypothetical protein
39	 32.32	-1	47028..47519	+	163	54293003	-	lpl0039	-	hypothetical protein
40	 40.46	0	47532..48527	-	331	54293004	-	lpl0040	-	hypothetical protein
41	 37.65	0	48692..49015	+	107	54293005	-	lpl0041	-	hypothetical protein
42	 36.35	0	49330..50190	-	286	54293006	-	lpl0042	-	hypothetical protein
43	 45.57	+2	50366..50602	-	78	54293007	-	lpl0043	-	hypothetical protein
44	 36.15	0	50805..51017	-	70	54293008	-	lpl0044	-	hypothetical protein
45	 35.84	0	51227..51625	+	132	54293009	-	lpl0045	-	hypothetical protein
46	 38.91	0	51824..52486	+	220	54293010	-	lpl0046	-	hypothetical protein
47	 40.73	0	52483..53361	+	292	54293011	-	lpl0047	-	hypothetical protein
48	 42.59	+1	53414..54709	+	431	54293012	-	lpl0048	-	hypothetical protein
49	 37.95	0	54773..55639	+	288	54293013	-	lpl0049	-	hypothetical protein
50	 35.95	0	55700..55852	-	50	54293014	-	lpl0050	-	hypothetical protein
51	 35.61	0	56145..56627	-	160	54293015	-	lpl0051	-	hypothetical protein
52	 42.84	+1	56837..57730	-	297	54293016	prpB	lpl0052	-	2-methylisocitrate lyase
53	 39.18	0	58039..58773	-	244	54293017	-	lpl0053	-	hypothetical protein
54	 37.30	0	58763..59467	-	234	54293018	-	lpl0054	-	hypothetical protein
55	 38.50	0	59573..60481	+	302	54293019	-	lpl0055	-	hypothetical protein
56	 41.11	0	60626..61345	+	239	54293020	-	lpl0056	-	hypothetical protein
57	 35.24	-1	61500..62498	+	332	54293021	-	lpl0057	-	hypothetical protein
58	 39.90	0	63198..64445	+	415	54293022	sdbB	lpl0058	-	SdbB protein (putative substrate of the Dot/Icm system)
59	 36.05	0	64742..65146	-	134	54293023	-	lpl0059	-	hypothetical protein
60	 39.25	0	65216..65959	+	247	54293024	-	lpl0060	-	hypothetical protein
61	 43.22	+1	66159..67250	+	363	54293025	-	lpl0061	-	hypothetical protein
62	 31.27	-2	68898..70691	+	597	54293026	-	lpl0063	-	hypothetical protein
63	 38.83	0	70860..72278	+	472	54293027	-	lpl0064	-	hypothetical protein
64	 41.71	0	72587..73840	+	417	54293028	-	lpl0065	-	hypothetical protein
65	 37.29	0	74228..74809	+	193	54293029	-	lpl0066	-	hypothetical protein
66	 38.55	0	74915..75700	+	261	54293030	-	lpl0067	-	hypothetical protein
67	 37.10	0	75697..76572	+	291	54293031	-	lpl0068	-	hypothetical protein
68	 42.39	+1	77003..77278	+	91	54293032	-	lpl0069	-	hypothetical protein
69	 46.60	+2	77345..79093	+	582	54293033	-	lpl0070	-	hypothetical protein
70	 38.25	0	79418..79783	+	121	54293034	-	lpl0071	-	hypothetical protein
71	 32.56	-1	80088..83207	+	1039	54293035	-	lpl0072	-	hypothetical protein
72	 46.48	+2	83521..84699	-	392	54293036	-	lpl0073	-	hypothetical protein
73	 42.87	+1	84746..86737	+	663	54293037	uvrB	lpl0074	-	excinuclease ABC subunit B
74	 36.37	0	87091..88704	+	537	54293038	-	lpl0075	-	hypothetical protein
75	 40.39	0	88796..90367	-	523	54293039	-	lpl0076	-	hypothetical protein
76	 30.16	-2	90445..90759	-	104	54293040	-	lpl0077	-	hypothetical protein
77	 41.07	0	90915..91496	+	193	54293041	-	lpl0078	-	hypothetical protein
78	 42.72	+1	91601..92911	+	436	54293042	pepP	lpl0079	-	hypothetical protein
79	 42.98	+1	92901..94103	+	400	54293043	ubiH	lpl0080	-	hypothetical protein
80	 42.27	+1	94100..95263	+	387	54293044	-	lpl0081	-	hypothetical protein
81	 41.88	0	95578..96525	-	315	54293045	-	lpl0082	-	hypothetical protein
82	 39.83	0	96522..98045	-	507	54293046	-	lpl0083	-	hypothetical protein
83	 36.93	0	98035..98562	-	175	54293047	-	lpl0084	-	hypothetical protein
84	 39.56	0	98812..100737	+	641	54293048	-	lpl0085	-	hypothetical protein
85	 37.39	0	100703..101293	-	196	54293049	-	lpl0086	-	hypothetical protein
86	 38.55	0	101520..102248	-	242	54293050	-	lpl0087	-	hypothetical protein
87	 42.73	+1	102338..102784	-	148	54293051	-	lpl0088	-	hypothetical protein
88	 37.03	0	102895..106869	+	1324	54293052	-	lpl0089	-	hypothetical protein
89	 41.72	0	107090..107554	+	154	54293053	-	lpl0090	-	hypothetical protein
90	 42.60	+1	107950..110130	+	726	54293054	rnr/lidP	lpl0091	-	hypothetical protein
91	 42.80	+1	110123..110872	+	249	54293055	-	lpl0092	-	hypothetical protein
92	 40.40	0	110865..111515	+	216	54293056	-	lpl0093	-	ribose-5-phosphate isomerase A
93	 36.01	0	111579..112958	+	459	54293057	-	lpl0094	-	hypothetical protein
94	 47.62	+2	112968..113135	-	55	54293058	-	lpl0095	-	hypothetical protein
95	 41.12	0	113342..114535	+	397	54293059	-	lpl0096	-	hypothetical protein
96	 36.55	0	114696..115037	+	113	54293060	-	lpl0097	-	hypothetical protein
97	 39.51	0	115152..115604	+	150	54293061	-	lpl0098	-	hypothetical protein
98	 41.10	0	115634..118324	-	896	54293062	polA	lpl0099	-	DNA polymerase I
99	 40.25	0	118327..119382	-	351	54293063	lpxD	lpl0100	-	hypothetical protein
100	 40.10	0	119646..120428	+	260	54293064	-	lpl0101	-	hypothetical protein
38.75	MEAN

3.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.