IslandPath Analysis: Nocardia farcinica IFM 10152



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.70   STD DEV: 3.45
Nocardia farcinica IFM 10152, complete genome - 1..6021225
5683 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 70.09	0	1..1989	+	662	54021965	dnaA	nfa10	-	putative replication initiator protein
2	 71.15	0	2846..4006	+	386	54021966	dnaN	nfa20	-	DNA polymerase III subunit beta
3	 71.64	0	4063..5229	+	388	54021967	recF	nfa30	-	recombination protein F
4	 74.21	+1	5676..6245	+	189	54021968	-	nfa40	-	hypothetical protein
5	 73.54	0	6336..7325	+	329	54021969	-	nfa50	-	putative hydrolase
6	 65.57	-1	7529..9619	+	696	54021970	gyrB	nfa60	-	DNA gyrase subunit B
7	 66.67	-1	9691..12201	+	836	54021971	gyrA	nfa70	-	DNA gyrase subunit A
8	 71.97	0	12243..13412	+	389	54021972	-	nfa80	-	hypothetical protein
9	 70.43	0	13977..15173	-	398	54021973	-	nfa90	-	putative phage integrase
10	 69.52	0	15225..15644	-	139	54021974	-	nfa100	-	hypothetical protein
11	 59.46	-2	15778..16776	-	332	54021975	-	nfa110	-	putative DNA-binding protein
12	 61.11	-2	16880..17077	+	65	54021976	-	nfa120	-	putative excision nuclease
13	 67.71	0	17098..18150	+	350	54021977	-	nfa130	-	hypothetical protein
14	 70.41	0	18147..18413	+	88	54021978	-	nfa140	-	hypothetical protein
15	 66.93	-1	18410..18787	+	125	54021979	-	nfa150	-	hypothetical protein
16	 71.43	0	18787..19038	+	83	54021980	-	nfa160	-	hypothetical protein
17	 68.54	0	19035..19460	+	141	54021981	-	nfa170	-	hypothetical protein
18	 68.75	0	19483..19962	+	159	54021982	-	nfa180	-	hypothetical protein
19	 71.93	0	20034..20546	+	170	54021983	-	nfa190	-	hypothetical protein
20	 70.14	0	20543..20686	+	47	54021984	-	nfa200	-	hypothetical protein
21	 67.23	-1	20686..21753	+	355	54021985	-	nfa210	-	hypothetical protein
22	 65.89	-1	21750..22007	+	85	54021986	-	nfa220	-	hypothetical protein
23	 70.35	0	22004..23305	+	433	54021987	-	nfa230	-	hypothetical protein
24	 70.00	0	23302..23601	+	99	54021988	-	nfa240	-	hypothetical protein
25	 66.67	-1	23598..23774	+	58	54021989	-	nfa250	-	hypothetical protein
26	 66.07	-1	24020..24352	+	110	54021990	-	nfa260	-	hypothetical protein
27	 70.56	0	24349..25092	+	247	54021991	-	nfa270	-	hypothetical protein
28	 63.26	-2	25089..25352	+	87	54021992	-	nfa280	-	hypothetical protein
29	 69.00	0	25349..25648	+	99	54021993	-	nfa290	-	hypothetical protein
30	 67.05	-1	25645..25902	+	85	54021994	-	nfa300	-	hypothetical protein
31	 72.08	0	25899..26138	+	79	54021995	-	nfa310	-	hypothetical protein
32	 70.48	0	26237..26341	+	34	54021996	-	nfa320	-	hypothetical protein
33	 71.56	0	26496..26720	+	74	54021997	-	nfa330	-	hypothetical protein
34	 70.89	0	26717..26929	+	70	54021998	-	nfa340	-	hypothetical protein
35	 71.92	0	26929..27309	+	126	54021999	-	nfa350	-	hypothetical protein
36	 67.62	0	27306..27410	+	34	54022000	-	nfa360	-	hypothetical protein
37	 74.92	+1	27468..27794	+	108	54022001	-	nfa370	-	hypothetical protein
38	 71.57	0	27896..28384	+	162	54022002	-	nfa380	-	hypothetical protein
39	 68.95	0	28359..30107	+	582	54022003	-	nfa390	-	putative phage terminase
40	 71.99	0	30120..30401	+	93	54022004	-	nfa400	-	hypothetical protein
41	 68.63	0	30405..31676	+	423	54022005	-	nfa410	-	hypothetical protein
42	 66.79	-1	31673..32464	+	263	54022006	-	nfa420	-	putative prohead protease
43	 70.48	0	32490..33800	+	436	54022007	-	nfa430	-	putative phage head
44	 69.55	0	33803..34045	+	80	54022008	-	nfa440	-	hypothetical protein
45	 69.80	0	34046..34588	+	180	54022009	-	nfa450	-	hypothetical protein
46	 69.39	0	34597..34890	+	97	54022010	-	nfa460	-	hypothetical protein
47	 71.83	0	34890..35141	+	83	54022011	-	nfa470	-	hypothetical protein
48	 73.04	0	35138..35545	+	135	54022012	-	nfa480	-	hypothetical protein
49	 63.31	-2	35579..36115	+	178	54022013	-	nfa490	-	hypothetical protein
50	 66.94	-1	36200..36559	+	119	54022014	-	nfa500	-	hypothetical protein
51	 71.52	0	36972..40532	+	1186	54022015	-	nfa510	-	putative phage tail
52	 69.90	0	40532..41428	+	298	54022016	-	nfa520	-	putative phage tail
53	 66.67	-1	41428..43053	+	541	54022017	-	nfa530	-	putative phage tail
54	 71.94	0	43064..44125	+	353	54022018	-	nfa540	-	putative phage tail
55	 72.11	0	44122..45204	+	360	54022019	-	nfa550	-	putative phage tail
56	 72.25	0	45201..46256	+	351	54022020	-	nfa560	-	putative phage tail
57	 69.80	0	46253..46891	+	212	54022021	-	nfa570	-	hypothetical protein
58	 67.28	0	46884..47696	+	270	54022022	-	nfa580	-	hypothetical protein
59	 65.28	-1	47693..47908	+	71	54022023	-	nfa590	-	hypothetical protein
60	 71.56	0	47905..48354	+	149	54022024	-	nfa600	-	hypothetical protein
61	 68.68	0	48347..48694	+	115	54022025	-	nfa610	-	hypothetical protein
62	 71.52	0	48687..50108	+	473	54022026	-	nfa620	-	hypothetical protein
63	 71.79	0	50108..50536	+	142	54022027	-	nfa630	-	hypothetical protein
64	 67.05	-1	50599..51117	-	172	54022028	-	nfa640	-	hypothetical protein
65	 66.67	-1	51118..51306	-	62	54022029	-	nfa650	-	hypothetical protein
66	 66.33	-1	51303..51596	-	97	54022030	-	nfa660	-	hypothetical protein
67	 70.46	0	51593..51829	-	78	54022031	-	nfa670	-	hypothetical protein
68	 67.98	0	51972..52580	+	202	54022032	-	nfa680	-	putative DNA-binding protein
69	 72.08	0	52585..52935	+	116	54022033	-	nfa690	-	hypothetical protein
70	 75.71	+1	53250..54167	+	305	54022034	-	nfa700	-	hypothetical protein
71	 70.28	0	54706..55701	+	331	54022035	-	nfa710	-	putative ABC transporter ATP-binding protein
72	 65.73	-1	55698..56555	+	285	54022036	-	nfa720	-	putative ABC transporter membrane protein
73	 69.23	0	56623..56856	+	77	54022037	-	nfa730	-	hypothetical protein
74	 71.78	0	56856..57716	+	286	54022038	-	nfa740	-	hypothetical protein
75	 72.73	0	57836..58297	-	153	54022039	-	nfa750	-	hypothetical protein
76	 61.36	-2	58400..58663	-	87	54022040	-	nfa760	-	putative septation inhibitor protein
77	 70.23	0	58811..59455	+	214	54022041	pabA	nfa770	-	para-aminobenzoate synthase component II
78	 73.62	0	59452..60573	+	373	54022042	-	nfa780	-	putative reductase/deaminase
79	 67.09	-1	60578..61048	-	156	54022043	-	nfa790	-	hypothetical protein
80	 69.81	0	61091..62998	-	635	54022044	-	nfa800	-	putative serine/threonine protein kinase
81	 72.83	0	62995..64518	-	507	54022045	-	nfa810	-	putative serine/threonine protein kinase
82	 70.76	0	64556..66022	-	488	54022046	-	nfa820	-	putative penicillin-binding protein
83	 67.95	0	66019..67497	-	492	54022047	ftsW2	nfa830	-	putative cell division protein
84	 73.20	0	67497..69026	-	509	54022048	-	nfa840	-	putative protein phosphatase
85	 65.60	-1	69023..69490	-	155	54022049	-	nfa850	-	hypothetical protein
86	 70.30	0	69650..71080	-	476	54022050	-	nfa860	-	hypothetical protein
87	 72.99	0	71532..72164	-	210	54022051	-	nfa870	-	putative transcriptional regulator
88	 72.03	0	72253..74415	+	720	54022052	-	nfa880	-	hypothetical protein
89	 71.65	0	75160..76203	-	347	54022053	-	nfa890	-	hypothetical protein
90	 73.97	0	76248..77027	+	259	54022054	-	nfa900	-	hypothetical protein
91	 73.84	0	77294..78589	-	431	54022055	-	nfa910	-	hypothetical protein
92	 71.15	0	78592..79572	-	326	54022056	-	nfa920	-	putative regulator
93	 74.98	+1	79569..80603	-	344	54022057	-	nfa930	-	hypothetical protein
94	 72.32	0	80600..81484	-	294	54022058	-	nfa940	-	hypothetical protein
95	 76.35	+1	81927..83579	-	550	54022059	-	nfa950	-	hypothetical protein
96	 68.82	0	84525..89171	+	1548	54022060	gltB	nfa960	-	putative glutamate synthase large subunit
97	 68.84	0	89216..90685	+	489	54022061	gltD	nfa970	-	glutamate synthase subunit beta
98	 72.56	0	90970..91869	+	299	54022062	-	nfa980	-	hypothetical protein
99	 76.67	+1	91884..92243	-	119	54022063	-	nfa990	-	hypothetical protein
100	 71.24	0	92306..92983	-	225	54022064	-	nfa1000	-	hypothetical protein
70.70	MEAN

3.45	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.