IslandPath Analysis: Lactobacillus brevis ATCC 367



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.63   STD DEV: 3.60
Lactobacillus brevis ATCC 367, complete genome - 1..2291220
2185 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.57	0	113..1471	+	452	116332682	-	LVIS_0001	-	DNA replication ATPase initiation
2	 46.67	0	1742..2881	+	379	116332683	-	LVIS_0002	-	DNA polymerase sliding clamp subunit
3	 44.74	0	3301..3528	+	75	116332684	-	LVIS_0003	-	S4-like RNA-binding protein
4	 49.78	0	3528..4682	+	384	116332685	recF	LVIS_0004	-	recombination protein F
5	 49.07	0	4686..6629	+	647	116332686	-	LVIS_0005	-	DNA gyrase, B subunit
6	 49.94	0	6651..9185	+	844	116332687	-	LVIS_0006	-	DNA gyrase, A subunit
7	 42.09	-1	9954..10250	+	98	116332688	rpsF	LVIS_0007	-	30S ribosomal protein S6
8	 49.21	0	10284..10850	+	188	116332689	-	LVIS_0008	-	single-stranded DNA-binding protein
9	 47.68	0	10879..11115	+	78	116332690	-	LVIS_0009	-	ribosomal protein S18
10	 52.95	+1	11260..12447	-	395	116332691	-	LVIS_0010	-	imidazolonepropionase related amidohydrolase
11	 48.20	0	12478..14085	-	535	116332692	-	LVIS_0011	-	ABC-type oligopeptide transport system, periplasmic component
12	 41.31	-1	14694..15470	+	258	116332693	-	LVIS_0012	-	D-alanyl-D-alanine carboxypeptidase
13	 54.85	+2	15603..16787	-	394	116332694	-	LVIS_0013	-	imidazolonepropionase related amidohydrolase
14	 50.12	0	16809..18410	-	533	116332695	-	LVIS_0014	-	ABC-type oligopeptide transport system, periplasmic component
15	 48.15	0	18966..19532	-	188	116332696	-	LVIS_0015	-	transcriptional regulator
16	 45.35	0	19652..19909	+	85	116332697	-	LVIS_0016	-	permease
17	 47.82	0	20244..22259	+	671	116332698	-	LVIS_0017	-	signal protein
18	 47.93	0	22328..22786	+	152	116332699	rplI	LVIS_0018	-	50S ribosomal protein L9
19	 38.81	-2	22962..23180	+	72	116332700	-	LVIS_0019	-	hypothetical protein
20	 49.46	0	23692..25080	+	462	116332701	-	LVIS_0020	-	replicative DNA helicase
21	 51.79	+1	25471..26001	-	176	116332702	-	LVIS_0021	-	multimeric flavodoxin WrbA
22	 47.99	0	26142..27383	+	413	116332703	-	LVIS_0022	-	major facilitator superfamily permease
23	 58.15	+2	27380..27649	+	89	116332704	-	LVIS_0023	-	hypothetical protein
24	 48.91	0	28098..29708	+	536	116332705	-	LVIS_0024	-	ABC-type oligopeptide transport system, periplasmic component
25	 45.83	0	29914..30153	+	79	116332706	-	LVIS_0025	-	hypothetical protein
26	 49.79	0	30193..30903	-	236	116332707	-	LVIS_0026	-	Zn-dependent protease
27	 44.44	0	30902..31045	+	47	116332708	-	LVIS_0027	-	hypothetical protein
28	 46.72	0	32160..32876	+	238	116332709	-	LVIS_0029	-	DNA-binding response regulator
29	 47.60	0	32921..34777	+	618	116332710	-	LVIS_0030	-	Signal transduction histidine kinase
30	 47.31	0	34764..36065	+	433	116332711	-	LVIS_0031	-	hypothetical protein
31	 46.43	0	36088..36942	+	284	116332712	-	LVIS_0032	-	hypothetical protein
32	 48.31	0	37088..37915	+	275	116332713	-	LVIS_0033	-	beta-lactamase superfamily hydrolase
33	 49.52	0	38062..39408	+	448	116332714	-	LVIS_0034	-	trypsin-like serine protease
34	 50.00	0	39945..40424	+	159	116332715	-	LVIS_0035	-	SPOUT methyltransferase superfamily protein
35	 31.58	-2	40495..41859	+	454	116332716	-	LVIS_0036	-	hypothetical protein
36	 38.67	-2	42690..42914	+	74	116332717	-	LVIS_0037	-	hypothetical protein
37	 27.56	-2	43173..43328	-	51	116332718	-	LVIS_0038	-	hypothetical protein
38	 39.39	-2	43341..43802	-	153	116332719	-	LVIS_0039	-	hypothetical protein
39	 48.78	0	44102..45985	-	627	116332720	-	LVIS_0040	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase
40	 50.10	0	46138..46626	-	162	116332721	-	LVIS_0041	-	acetyltransferase
41	 31.75	-2	46881..47195	+	104	116332722	-	LVIS_0042	-	hypothetical protein
42	 43.94	0	47179..48102	-	307	116332723	-	LVIS_0043	-	IS30 family transposase
43	 35.87	-2	48303..49328	+	341	116332724	-	LVIS_0044	-	site-specific DNA methylase
44	 43.74	0	49185..50981	-	598	116332725	-	LVIS_0045	-	transposase
45	 33.04	-2	51432..52124	+	230	116332726	-	LVIS_0046	-	hypothetical protein
46	 44.41	0	52189..53109	+	306	116332727	-	LVIS_0047	-	IS30 family transposase
47	 32.18	-2	53135..54004	+	289	116332728	-	LVIS_0048	-	hypothetical protein
48	 40.97	-1	54125..55054	+	309	116332729	-	LVIS_0049	-	IS30 family transposase
49	 46.20	0	55099..55821	+	240	116332730	-	LVIS_0050	-	esterase/lipase
50	 52.06	+1	55947..56891	+	314	116332731	-	LVIS_0051	-	ADP-ribosylglycohydrolase
51	 51.00	+1	56891..57490	+	199	116332732	-	LVIS_0052	-	acetyltransferase
52	 49.84	0	57534..57848	-	104	116332733	-	LVIS_0053	-	hypothetical protein
53	 50.61	+1	57888..58460	-	190	116332734	-	LVIS_0054	-	permease, cadmium resistance protein
54	 49.07	0	58549..58980	+	143	116332735	-	LVIS_0055	-	acetyltransferase
55	 44.83	0	59023..59535	-	170	116332736	-	LVIS_0056	-	hypothetical protein
56	 47.78	0	59759..61399	-	546	116332737	-	LVIS_0057	-	ABC-type oligopeptide transport system, periplasmic component
57	 48.90	0	62097..62732	+	211	116332738	-	LVIS_0058	-	transcriptional regulator
58	 51.92	+1	62872..64146	+	424	116332739	-	LVIS_0059	-	hypothetical protein
59	 50.41	+1	64210..65058	-	282	116332740	-	LVIS_0060	-	membrane protease family stomatin/prohibitin-like protein
60	 49.09	0	65072..65401	-	109	116332741	-	LVIS_0061	-	hypothetical protein
61	 41.19	-1	65499..66236	-	245	116332742	-	LVIS_0062	-	domain of unknown function (DUF1085)
62	 45.92	0	66549..67112	+	187	116332743	-	LVIS_0063	-	hypothetical protein
63	 43.65	0	67229..67732	-	167	116332744	-	LVIS_0064	-	hypothetical protein
64	 51.64	+1	67819..68184	-	121	116332745	-	LVIS_0065	-	aromatic compounds catabolism protein
65	 49.15	0	68217..69038	+	273	116332746	-	LVIS_0066	-	naphthoate synthase
66	 53.97	+2	69054..70487	+	477	116332747	-	LVIS_0067	-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
67	 46.22	0	70552..71094	-	180	116332748	-	LVIS_0068	-	hypothetical protein
68	 50.48	+1	71297..72241	+	314	116332749	-	LVIS_0069	-	hypothetical protein
69	 49.97	0	72301..73815	-	504	116332750	murE	LVIS_0070	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
70	 47.58	0	73836..75344	-	502	116332751	-	LVIS_0071	-	lysyl-tRNA synthetase (class II)
71	 50.59	+1	75558..76739	+	393	116332752	-	LVIS_0072	-	major facilitator superfamily permease
72	 44.50	0	77204..77758	-	184	116332753	-	LVIS_0075	-	transcriptional regulator
73	 44.74	0	77866..78873	+	335	116332754	-	LVIS_0076	-	NADPH:quinone reductase related Zn-dependent oxidoreductase
74	 45.18	0	79144..79734	+	196	116332755	-	LVIS_0077	-	transcriptional regulator
75	 45.62	0	79928..81433	+	501	116332756	-	LVIS_0078	-	glutamate gamma-aminobutyrate antiporter
76	 45.21	0	81489..82928	+	479	116332757	-	LVIS_0079	-	glutamate decarboxylase
77	 45.57	0	82989..84500	+	503	116332758	-	LVIS_0080	-	glutamyl- and glutaminyl-tRNA synthetase
78	 45.79	0	84677..85591	+	304	116332759	-	LVIS_0081	-	hypothetical protein
79	 45.14	0	91250..92536	+	428	116332760	-	LVIS_0085	-	Na+/H+-dicarboxylate symporter
80	 48.23	0	93624..94187	+	187	116332761	-	LVIS_0086	-	peroxiredoxin
81	 42.53	-1	94304..94651	-	115	116332762	-	LVIS_0087	-	hypothetical protein
82	 49.22	0	94814..95455	+	213	116332763	-	LVIS_0088	-	nucleoside-diphosphate-sugar epimerase
83	 51.89	+1	95547..95810	+	87	116332764	-	LVIS_0089	-	hypothetical protein
84	 45.32	0	96063..96329	-	88	116332765	-	LVIS_0090	-	hypothetical protein
85	 41.90	-1	96391..96705	-	104	116332766	-	LVIS_0091	-	XRE family transcriptional regulator
86	 40.58	-1	96853..97059	-	68	116332767	-	LVIS_0092	-	hypothetical protein
87	 45.50	0	97522..97710	-	62	116332768	-	LVIS_0093	-	hypothetical protein
88	 47.12	0	97877..99319	-	480	116332769	-	LVIS_0094	-	6-phosphogluconate dehydrogenase
89	 51.52	+1	99453..99881	-	142	116332770	-	LVIS_0095	-	transcriptional regulator
90	 47.39	0	99966..100406	+	146	116332771	-	LVIS_0096	-	acetyltransferase
91	 45.50	0	100516..102003	-	495	116332772	-	LVIS_0097	-	glucose-6-phosphate 1-dehydrogenase
92	 54.30	+2	102464..103288	+	274	116332773	-	LVIS_0098	-	aminoglycoside N3'-acetyltransferase
93	 48.04	0	103376..104218	-	280	116332774	-	LVIS_0099	-	Aryl-alcohol dehydrogenase related enzyme
94	 48.04	0	104458..105273	+	271	116332775	-	LVIS_0100	-	hypothetical protein
95	 47.47	0	105527..106693	+	388	116332776	-	LVIS_0101	-	major facilitator superfamily permease
96	 48.55	0	106851..108197	+	448	116332777	-	LVIS_0102	-	glycerol-3-phosphatase transporter
97	 50.07	0	108267..109013	-	248	116332778	-	LVIS_0103	-	nitroreductase
98	 48.73	0	109010..109483	-	157	116332779	-	LVIS_0104	-	hypothetical protein
99	 52.40	+1	109814..111334	+	506	116332780	-	LVIS_0105	-	ABC transporter ATPase
100	 48.54	0	111433..112866	+	477	116332781	-	LVIS_0106	-	major facilitator superfamily permease
46.63	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.