IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.01   STD DEV: 3.27
Staphylococcus aureus subsp. aureus USA300, complete genome - 1..2872769
2560 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.89	0	544..1905	+	453	87161673	dnaA	SAUSA300_0001	-	chromosomal replication initiation protein
2	 32.80	0	2183..3316	+	377	87160973	dnaN	SAUSA300_0002	-	DNA polymerase III subunit beta
3	 35.37	0	3697..3942	+	81	87160250	-	SAUSA300_0003	-	hypothetical protein
4	 33.78	0	3939..5051	+	370	87161857	recF	SAUSA300_0004	-	recombination protein F
5	 37.00	+1	5061..6995	+	644	87161454	gyrB	SAUSA300_0005	-	DNA gyrase, B subunit
6	 36.86	+1	7032..9695	+	887	87160436	gyrA	SAUSA300_0006	-	DNA gyrase, A subunit
7	 37.06	+1	9782..10612	-	276	87160041	-	SAUSA300_0007	-	hypothetical protein
8	 36.90	+1	10920..12434	+	504	87161623	hutH	SAUSA300_0008	-	histidine ammonia-lyase
9	 34.58	0	12813..14099	+	428	87160901	serS	SAUSA300_0009	-	seryl-tRNA synthetase
10	 37.07	+1	14749..15444	+	231	87160307	-	SAUSA300_0010	-	hypothetical protein
11	 34.55	0	15441..15770	+	109	87162161	-	SAUSA300_0011	-	hypothetical protein
12	 35.71	0	16133..17101	+	322	87160802	-	SAUSA300_0012	-	putative homoserine O-acetyltransferase
13	 33.12	0	17392..18330	+	312	87159904	-	SAUSA300_0013	-	hypothetical protein
14	 35.77	0	18345..20312	+	655	87162063	-	SAUSA300_0014	-	hypothetical protein
15	 31.77	0	20309..20755	+	148	87161718	rplI	SAUSA300_0015	-	50S ribosomal protein L9
16	 38.33	+1	20787..22187	+	466	87160622	dnaB	SAUSA300_0016	-	replicative DNA helicase
17	 36.37	+1	22465..23748	+	427	87160876	purA	SAUSA300_0017	-	adenylosuccinate synthetase
18	 36.47	+1	24952..25653	+	233	87160310	-	SAUSA300_0020	-	DNA-binding response regulator
19	 34.87	0	25666..27492	+	608	87161483	-	SAUSA300_0021	-	sensory box histidine kinase
20	 34.89	0	27536..28819	+	427	87162050	-	SAUSA300_0022	-	hypothetical protein
21	 32.45	0	28820..29608	+	262	87160298	-	SAUSA300_0023	-	hypothetical protein
22	 35.83	0	29998..30798	+	266	87160913	-	SAUSA300_0024	-	metallo-beta-lactamase family protein
23	 38.68	+1	31026..33344	+	772	87161790	-	SAUSA300_0025	-	5'-nucleotidase family protein
24	 39.38	+1	33712..34191	+	159	87161272	-	SAUSA300_0026	-	hypothetical protein
25	 28.48	-1	34513..35769	+	418	87161823	-	SAUSA300_0027	-	hypothetical protein
26	 34.37	0	35877..36551	-	224	87160207	-	SAUSA300_0028	-	putative transposase
27	 29.17	-1	36809..36976	+	55	87160750	-	SAUSA300_0029	-	hypothetical protein
28	 33.47	0	37813..38556	+	247	87161628	-	SAUSA300_0030	-	putative glycerophosphoryl diester phosphodiesterase
29	 29.14	-1	38653..39081	+	142	87160887	-	SAUSA300_0031	-	hypothetical protein
30	 30.59	0	39127..41133	-	668	87161759	mecA	SAUSA300_0032	-	penicillin-binding protein 2'
31	 29.28	-1	41233..42219	+	328	87162304	-	SAUSA300_0033	-	methicillin-resistance MecR1 regulatory protein
32	 37.50	+1	42236..42451	+	71	87161163	-	SAUSA300_0035	-	hypothetical protein
33	 28.37	-1	42442..43953	-	503	87160780	-	SAUSA300_0034	-	IS1272, transposase
34	 37.08	+1	44101..44607	-	168	87161958	-	SAUSA300_0036	-	hypothetical protein
35	 34.99	0	45892..47520	-	542	87160426	ccrB	SAUSA300_0037	-	cassette chromosome recombinase B
36	 34.59	0	47542..48891	-	449	87161136	ccrA	SAUSA300_0038	-	cassette chromosome recombinase A
37	 34.51	0	49125..50912	-	595	87161581	-	SAUSA300_0039	-	hypothetical protein
38	 33.68	0	50912..51202	-	96	87160375	-	SAUSA300_0040	-	hypothetical protein
39	 25.64	-2	51299..52390	+	363	87162236	-	SAUSA300_0041	-	hypothetical protein
40	 28.50	-1	53118..54608	+	496	87161505	-	SAUSA300_0042	-	hypothetical protein
41	 31.61	0	54981..55154	-	57	87160680	-	SAUSA300_0043	-	hypothetical protein
42	 33.73	0	55232..56236	-	334	87162240	-	SAUSA300_0044	-	metallo-beta-lactamase family protein
43	 25.54	-2	56489..56860	+	123	87161433	-	SAUSA300_0045	-	HNH endonuclease family protein
44	 30.11	0	56989..57609	+	206	87160457	-	SAUSA300_0046	-	hypothetical protein
45	 27.85	-1	59098..60063	+	321	87161965	-	SAUSA300_0047	-	hypothetical protein
46	 23.96	-2	60160..60351	+	63	87161597	-	SAUSA300_0048	-	hypothetical protein
47	 26.67	-1	60443..60772	+	109	87160172	-	SAUSA300_0049	-	hypothetical protein
48	 24.48	-2	60849..61187	-	112	87160214	-	SAUSA300_0050	-	hypothetical protein
49	 22.40	-2	62607..62789	+	60	87161681	-	SAUSA300_0052	-	hypothetical protein
50	 27.11	-1	63100..63597	-	165	87161097	speG	SAUSA300_0053	-	spermidine N(1)-acetyltransferase
51	 21.71	-2	63785..63913	-	42	87160202	-	SAUSA300_0054	-	hypothetical protein
52	 36.70	+1	64125..65222	+	365	87161898	-	SAUSA300_0055	-	alcohol dehydrogenase, zinc-containing
53	 36.51	+1	65715..66218	-	167	87162269	-	SAUSA300_0056	-	hypothetical protein
54	 32.05	0	66234..66545	-	103	87160764	-	SAUSA300_0057	-	hypothetical protein
55	 32.26	0	66547..66639	-	30	87161043	-	SAUSA300_0058	-	hypothetical protein
56	 32.19	0	66632..66982	-	116	87161604	-	SAUSA300_0059	-	hypothetical protein
57	 30.67	0	67966..68790	+	274	87162436	-	SAUSA300_0060	-	putative transposase
58	 35.59	0	68890..69819	-	309	87160434	arcC	SAUSA300_0061	-	carbamate kinase
59	 33.63	0	69839..70837	-	332	87161371	arcB	SAUSA300_0062	-	ornithine carbamoyltransferase
60	 23.62	-2	70875..71564	-	229	87159898	-	SAUSA300_0063	-	cyclic nucleotide-binding domain-containing protein
61	 33.26	0	71606..73027	-	473	87160589	arcD	SAUSA300_0064	-	arginine/oirnithine antiporter
62	 33.41	0	73113..74348	-	411	87161307	arcA	SAUSA300_0065	-	arginine deiminase
63	 25.06	-2	74617..75063	-	148	87162413	argR	SAUSA300_0066	-	arginine repressor
64	 26.16	-2	75565..75996	+	143	87162383	-	SAUSA300_0067	-	universal stress protein
65	 26.80	-1	76073..76225	-	50	87160236	-	SAUSA300_0068	-	cadmium-exporting ATPase, truncation
66	 31.13	0	77130..77945	+	271	87162009	-	SAUSA300_0070	-	putative lysophospholipase
67	 33.33	0	78432..79445	+	337	87161793	-	SAUSA300_0071	-	ISSep1-like transposase
68	 36.46	+1	79759..80397	+	212	87160872	-	SAUSA300_0072	-	hypothetical protein
69	 35.71	0	80394..81947	+	517	87161538	-	SAUSA300_0073	-	peptide ABC transporter, peptide-binding protein
70	 38.24	+1	81950..82906	+	318	87161107	opp-3B	SAUSA300_0074	-	oligopeptide permease, channel-forming protein
71	 37.63	+1	82906..83673	+	255	87160395	opp-3C	SAUSA300_0075	-	oligopeptide permease, channel-forming protein
72	 34.64	0	83640..84407	+	255	87159972	-	SAUSA300_0076	-	ABC transporter, ATP-binding protein
73	 33.65	0	84400..85035	+	211	87162114	-	SAUSA300_0077	-	ABC transporter, ATP-binding protein
74	 33.93	0	86094..88118	+	674	87161242	copA	SAUSA300_0078	-	ATPase copper transport
75	 32.42	0	88136..88681	+	181	87160733	-	SAUSA300_0079	-	putative lipoprotein
76	 21.51	-2	89207..89299	+	30	87160181	-	SAUSA300_0080	-	hypothetical protein
77	 25.46	-2	89446..91197	+	583	87161877	-	SAUSA300_0081	-	hypothetical protein
78	 35.32	0	91291..91743	-	150	87160657	-	SAUSA300_0082	-	hypothetical protein
79	 31.61	0	91958..92713	-	251	87160645	-	SAUSA300_0083	-	hypothetical protein
80	 31.03	0	92713..92973	-	86	87159958	-	SAUSA300_0084	-	hypothetical protein
81	 31.84	0	93110..94177	+	355	87162131	-	SAUSA300_0085	-	hypothetical protein
82	 33.56	0	94208..95542	+	444	87160960	-	SAUSA300_0086	-	hypothetical protein
83	 31.37	0	97021..97122	-	33	87160921	-	SAUSA300_0088	-	hypothetical protein
84	 39.23	+1	97421..98353	-	310	87161344	-	SAUSA300_0089	-	hypothetical protein
85	 31.65	0	98968..99264	+	98	87161874	-	SAUSA300_0090	-	hypothetical protein
86	 29.07	-1	99336..100556	-	406	87160166	-	SAUSA300_0091	-	putative permease
87	 31.39	0	100549..101010	-	153	87160051	-	SAUSA300_0092	-	hypothetical protein
88	 27.64	-1	101212..102072	+	286	87160804	-	SAUSA300_0093	-	transcriptional regulator
89	 26.22	-2	102427..102960	-	177	87162429	-	SAUSA300_0094	-	hypothetical protein
90	 26.21	-2	103051..103794	+	247	87160449	-	SAUSA300_0095	-	transcriptional regulator
91	 30.18	0	104228..104830	+	200	87161497	-	SAUSA300_0096	-	hypothetical protein
92	 31.30	0	105097..108249	+	1050	87161985	-	SAUSA300_0097	-	hypothetical protein
93	 32.09	0	108306..108788	+	160	87160412	-	SAUSA300_0098	-	hypothetical protein
94	 33.33	0	108993..109979	+	328	87162123	plc	SAUSA300_0099	-	1-phosphatidylinositol phosphodiesterase
95	 29.57	-1	110200..110970	+	256	87161540	-	SAUSA300_0100	-	staphylococcal tandem lipoprotein
96	 28.15	-1	111022..111792	+	256	87161129	-	SAUSA300_0101	-	staphylococcal tandem lipoprotein
97	 29.96	0	111856..112626	+	256	87160569	-	SAUSA300_0102	-	staphylococcal tandem lipoprotein
98	 31.12	0	112693..113460	+	255	87162291	-	SAUSA300_0103	-	staphylococcal tandem lipoprotein
99	 33.65	0	113593..115791	+	732	87161751	-	SAUSA300_0104	-	AraC family transcriptional regulator
100	 37.15	+1	115942..117120	+	392	87161414	-	SAUSA300_0105	-	M20/M25/M40 family peptidase
33.01	MEAN

3.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.