IslandPath Analysis: Ralstonia eutropha H16



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.66   STD DEV: 4.02
Ralstonia eutropha H16 chromosome 1, complete sequence - 1..4052032
3651 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.20	0	689..2455	+	588	113866032	dnaA	H16_A0001	-	chromosomal replication initiation protein
2	 61.74	-1	2823..3938	+	371	113866033	dnaN	H16_A0002	-	DNA polymerase III subunit beta
3	 60.69	-1	4168..6693	+	841	113866034	gyrB	H16_A0003	-	DNA gyrase subunit B
4	 60.49	-1	6960..9467	+	835	113866035	h16_A0004	H16_A0004	-	Type I restriction-modification system methylation subunit
5	 54.14	-2	9460..10728	+	422	113866036	h16_A0005	H16_A0005	-	Type I restriction-modification system specificity subunit
6	 61.64	-1	10728..14048	+	1106	113866037	h16_A0006	H16_A0006	-	Type I restriction-modification system restriction subunit
7	 61.90	-1	14053..14766	+	237	113866038	h16_A0007	H16_A0007	-	metal-dependent hydrolase
8	 59.69	-1	14773..17151	+	792	113866039	h16_A0008	H16_A0008	-	5-methylcytosine-specific restriction protein B
9	 59.79	-1	17160..18512	+	450	113866040	h16_A0009	H16_A0009	-	5-methylcytosine-specific restriction protein C
10	 56.53	-2	18786..19367	+	193	113866041	h16_A0010	H16_A0010	-	putative phage-related protein
11	 52.43	-2	19324..20559	-	411	113866042	h16_A0011	H16_A0011	-	hypothetical protein
12	 43.04	-2	20763..21236	-	157	113866043	h16_A0012	H16_A0012	-	hypothetical protein
13	 47.21	-2	21451..22293	-	280	113866044	h16_A0013	H16_A0013	-	hypothetical protein
14	 50.63	-2	22436..23551	-	371	113866045	h16_A0014	H16_A0014	-	restriction endonuclease
15	 64.85	0	24045..24374	+	109	113866046	h16_A0015	H16_A0015	-	hypothetical protein
16	 67.04	0	24477..25538	-	353	113866047	h16_A0016	H16_A0016	-	putative signal transduction protein
17	 58.15	-2	26086..27024	-	312	113866048	h16_A0017	H16_A0017	-	hypothetical protein
18	 61.44	-1	27081..31499	-	1472	113866049	h16_A0018	H16_A0018	-	chromosome segregation ATPase
19	 62.62	-1	31501..32241	-	246	113866050	h16_A0019	H16_A0019	-	hypothetical protein
20	 57.73	-2	32238..33803	-	521	113866051	h16_A0020	H16_A0020	-	hypothetical protein
21	 53.07	-2	34342..34863	-	173	113866052	h16_A0021	H16_A0021	-	hypothetical protein
22	 48.78	-2	34860..35474	-	204	113866053	h16_A0022	H16_A0022	-	hypothetical protein
23	 51.87	-2	35471..36031	-	186	113866054	h16_A0023	H16_A0023	-	hypothetical protein
24	 56.36	-2	36695..37024	+	109	113866055	h16_A0024	H16_A0024	-	hypothetical protein
25	 65.87	0	37110..39752	-	880	113866056	h16_A0025	H16_A0025	-	signal transduction protein
26	 63.52	0	40214..40975	-	253	113866057	h16_A0026	H16_A0026	-	hypothetical protein
27	 59.37	-1	41654..42160	+	168	113866058	h16_A0027	H16_A0027	-	hypothetical protein
28	 63.97	0	42132..42650	+	172	113866059	h16_A0028	H16_A0028	-	hypothetical protein
29	 61.59	-1	42643..45204	+	853	113866060	h16_A0029	H16_A0029	-	membrane anchored protein
30	 61.02	-1	45247..46362	+	371	113866061	h16_A0030	H16_A0030	-	hypothetical protein
31	 65.38	0	46589..47911	-	440	113866062	h16_A0031	H16_A0031	-	major facilitator superfamily transporter ACS family protein
32	 66.45	0	48020..48952	-	310	113866063	h16_A0032	H16_A0032	-	hypothetical protein
33	 67.43	0	49037..49819	-	260	113866064	h16_A0033	H16_A0033	-	short chain dehydrogenase
34	 65.01	0	49916..50698	+	260	113866065	h16_A0034	H16_A0034	-	GntR family transcriptional regulator
35	 66.13	0	50803..51357	-	184	113866066	h16_A0035	H16_A0035	-	IclR family transcriptional regulator
36	 66.26	0	51548..52525	+	325	113866067	h16_A0036	H16_A0036	-	extra-cytoplasmic solute receptor
37	 64.73	0	52570..53445	+	291	113866068	h16_A0037	H16_A0037	-	Alpha-ketoglutarate-dependent taurine dioxygenase
38	 63.15	0	53508..54359	+	283	113866069	h16_A0038	H16_A0038	-	Alpha-ketoglutarate-dependent taurine dioxygenase
39	 58.97	-1	54625..55209	-	194	113866070	h16_A0039	H16_A0039	-	GNAT family N-acetyltransferase
40	 59.90	-1	55253..55651	-	132	113866071	h16_A0040	H16_A0040	-	hypothetical protein
41	 69.70	0	55714..56439	-	241	113866072	h16_A0041	H16_A0041	-	hypothetical protein
42	 64.20	0	56446..57621	-	391	113866073	h16_A0042	H16_A0042	-	glutathionylspermidine synthase
43	 68.89	0	57621..59015	-	464	113866074	hss	H16_A0043	-	homospermidine synthase
44	 70.56	0	59202..60152	-	316	113866075	speB	H16_A0044	-	formimidoylglutamase
45	 67.06	0	60149..60910	-	253	113866076	hisP	H16_A0045	-	ABC transporter ATPase
46	 63.83	0	60907..61575	-	222	113866077	hisM	H16_A0046	-	ABC transporter permease
47	 65.08	0	61594..62349	-	251	113866078	hisJ	H16_A0047	-	ABC transporter periplasmic protein
48	 69.43	0	62430..63224	-	264	113866079	h16_A0048	H16_A0048	-	IclR family transcriptional regulator
49	 69.09	0	63359..64018	-	219	113866080	h16_A0049	H16_A0049	-	S-isoprenylcysteine methyltransferase-like protein
50	 62.56	-1	64098..64487	+	129	113866081	h16_A0050	H16_A0050	-	pyrophosphatase
51	 66.85	0	64760..65290	+	176	113866082	h16_A0051	H16_A0051	-	hypothetical protein
52	 69.53	0	65293..66270	-	325	113866083	h16_A0052	H16_A0052	-	hypothetical protein
53	 68.06	0	66381..66884	-	167	113866084	h16_A0053	H16_A0053	-	hypothetical protein
54	 69.02	0	66877..67767	-	296	113866085	h16_A0054	H16_A0054	-	SAM-dependent methyltransferase
55	 68.28	0	67842..68276	+	144	113866086	h16_A0055	H16_A0055	-	SoxR family transcriptional regulator
56	 68.17	0	68388..70187	-	599	113866087	tar1	H16_A0056	-	methyl-accepting chemotaxis protein
57	 68.50	0	70719..71918	+	399	113866088	h16_A0057	H16_A0057	-	hypothetical protein
58	 66.67	0	72060..72965	+	301	113866089	h16_A0058	H16_A0058	-	hypothetical protein
59	 67.23	0	72999..74408	+	469	113866090	dbpA	H16_A0059	-	ATP-dependent RNA helicase DbpA
60	 67.11	0	74441..75556	-	371	113866091	h16_A0060	H16_A0060	-	hypothetical protein
61	 70.03	0	75622..76335	+	237	113866092	h16_A0061	H16_A0061	-	TetR/AcrR family transcriptional regulator
62	 61.68	-1	76478..76918	+	146	113866093	h16_A0062	H16_A0062	-	inosine-5'-monophosphate dehydrogenase
63	 70.51	0	76990..78030	-	346	113866094	h16_A0063	H16_A0063	-	hypothetical protein
64	 72.22	+1	78279..79844	+	521	113866095	h16_A0064	H16_A0064	-	major facilitator superfamily transporter DHA2 family protein
65	 67.32	0	79927..80535	+	202	113866096	h16_A0065	H16_A0065	-	glutathione peroxidase
66	 66.83	0	80560..81186	-	208	113866097	h16_A0066	H16_A0066	-	glutathione S-transferase
67	 70.60	0	81320..82057	-	245	113866098	h16_A0067	H16_A0067	-	hydantoin racemase
68	 68.50	0	82131..83552	-	473	113866099	h16_A0068	H16_A0068	-	dihydropyrimidinase
69	 65.98	0	83557..84285	-	242	113866100	h16_A0069	H16_A0069	-	maleate cis-trans isomerase
70	 64.97	0	84375..85673	-	432	113866101	h16_A0070	H16_A0070	-	major facilitator superfamily transporter ACS family protein
71	 68.77	0	85832..86590	+	252	113866102	h16_A0071	H16_A0071	-	GntR family transcriptional regulator
72	 69.85	0	86616..87464	+	282	113866103	h16_A0072	H16_A0072	-	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
73	 69.31	0	87734..88981	+	415	113866104	h16_A0073	H16_A0073	-	M20 family peptidase
74	 72.03	+1	89000..89875	-	291	113866105	h16_A0074	H16_A0074	-	AraC family transcriptional regulator
75	 68.05	0	90004..91236	+	410	113866106	h16_A0075	H16_A0075	-	major facilitator superfamily transporter fosmidomycin resistance protein
76	 71.27	+1	91240..91695	-	151	113866107	h16_A0076	H16_A0076	-	MarR family transcriptional regulator
77	 73.88	+1	91898..92812	+	304	113866108	h16_A0077	H16_A0077	-	PecM protein
78	 72.67	+1	92860..93159	+	99	113866109	h16_A0078	H16_A0078	-	hypothetical protein
79	 69.43	0	93318..94259	+	313	113866110	h16_A0079	H16_A0079	-	extra-cytoplasmic solute receptor
80	 69.75	0	94262..94942	-	226	113866111	h16_A0080	H16_A0080	-	response regulator
81	 69.24	0	95164..95901	+	245	113866112	h16_A0081	H16_A0081	-	response regulator
82	 73.97	+1	95898..96623	+	241	113866113	h16_A0082	H16_A0082	-	fragment of signal transduction histidine kinase
83	 63.75	0	96675..97772	-	365	113866114	h16_A0083	H16_A0083	-	outer membrane protein (porin)
84	 63.92	0	98139..98393	-	84	113866115	h16_A0084	H16_A0084	-	cell division inhibitor MinE
85	 63.36	0	98415..99230	-	271	113866116	h16_A0085	H16_A0085	-	cell division inhibitor MinD
86	 69.25	0	99298..100110	-	270	113866117	h16_A0086	H16_A0086	-	septum formation inhibitor
87	 66.26	0	100341..101312	+	323	113866118	corA1	H16_A0087	-	Mg2+/Co2+ transporter
88	 69.36	0	101467..102171	+	234	113866119	h16_A0088	H16_A0088	-	TPR repeat-containing protein
89	 69.19	0	102276..103106	-	276	113866120	h16_A0089	H16_A0089	-	MerR family transcriptional regulator
90	 73.02	+1	103205..104149	+	314	113866121	h16_A0090	H16_A0090	-	LysR family transcriptional regulator
91	 69.66	0	104272..105240	+	322	113866122	h16_A0091	H16_A0091	-	extra-cytoplasmic solute receptor
92	 70.15	0	105359..106333	+	324	113866123	h16_A0092	H16_A0092	-	succinylglutamate desuccinylase
93	 67.22	0	106422..106964	-	180	113866124	h16_A0093	H16_A0093	-	hypothetical protein
94	 68.63	0	107104..107307	-	67	113866125	h16_A0094	H16_A0094	-	hypothetical protein
95	 68.77	0	107338..107907	-	189	113866126	h16_A0095	H16_A0095	-	hypothetical protein
96	 71.28	+1	107949..109226	-	425	113866127	h16_A0096	H16_A0096	-	glycosyltransferase
97	 68.34	0	109295..110251	-	318	113866128	h16_A0097	H16_A0097	-	LysR family transcriptional regulator
98	 69.03	0	110432..111406	+	324	113866129	h16_A0098	H16_A0098	-	extra-cytoplasmic solute receptor
99	 69.89	0	111478..112656	+	392	113866130	h16_A0099	H16_A0099	-	bile acid-inducible operon protein F, acyl-CoA transferase/carnitine dehydratase
100	 66.67	0	112713..113495	+	260	113866131	h16_A0100	H16_A0100	-	enoyl-CoA hydratase/carnithine racemase
66.66	MEAN

4.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.