IslandPath Analysis: Sodalis glossinidius str. 'morsitans'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.45   STD DEV: 5.35
Sodalis glossinidius str. 'morsitans', complete genome - 1..4171146
2432 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.05	0	1..1395	+	464	85057979	dnaA	SG0001	-	chromosomal replication initiation protein
2	 57.77	0	1398..2498	+	366	85057980	-	SG0002	-	DNA polymerase III subunit beta
3	 56.16	0	2525..3619	+	364	85057981	recF	SG0003	-	recombination protein F
4	 55.73	0	3638..6052	+	804	85057982	gyrB	SG0004	-	DNA gyrase subunit B
5	 53.96	0	7385..7927	+	180	85057983	-	SG0005	-	putative galactonate operon transcriptional repressor
6	 43.64	-2	10538..11701	-	387	85057984	-	SG0006	-	putative effector protein
7	 50.97	0	12873..13439	+	188	85057985	-	SG0007	-	putative transposase
8	 50.24	0	18087..18500	+	137	85057986	-	SG0008	-	heat shock protein IbpA
9	 57.07	0	19297..20484	-	395	85057987	avtA	SG0009	-	valine--pyruvate transaminase
10	 50.60	0	20622..21623	-	333	85057988	-	SG0010	-	hypothetical protein
11	 56.72	0	22715..23629	+	304	85057989	glyQ	SG0011	-	glycyl-tRNA synthetase subunit alpha
12	 61.06	+1	23639..25708	+	689	85057990	glyS	SG0012	-	glycyl-tRNA synthetase subunit beta
13	 54.76	0	25779..26282	+	167	85057991	-	SG0013	-	hypothetical protein
14	 55.30	0	27270..29195	+	641	85057992	-	SG0014	-	PTS system mannitol-specific IIABC component
15	 58.14	0	29282..30430	+	382	85057993	-	SG0015	-	mannitol-1-phosphate 5-dehydrogenase
16	 57.38	0	30489..31037	+	182	162382801	mtlR	SG0016	-	mannitol repressor protein
17	 55.18	0	31283..31900	-	205	85057995	-	SG0017	-	superoxide dismutase
18	 52.14	0	34679..35098	+	139	85057996	-	SG0018	-	hypothetical protein
19	 57.65	0	35597..36805	-	402	85057997	-	SG0019	-	putative transport protein
20	 56.64	0	37556..38014	+	152	85057998	-	SG0020	-	transcriptional regulator
21	 46.84	-1	41668..42015	+	115	85057999	-	SG0021	-	transcriptional activator FlhD
22	 48.90	-1	42020..42610	+	196	85058000	-	SG0022	-	transcriptional activator FlhC
23	 47.94	-1	42706..43602	+	298	85058001	-	SG0023	-	flagellar motor protein MotA
24	 56.82	0	43599..44624	+	341	85058002	motB	SG0024	-	flagellar motor protein MotB
25	 57.65	0	45031..46194	+	387	85058003	-	SG0025	-	flagellar biosynthetic protein FlhB
26	 57.42	0	46175..48271	+	698	85058004	flhA	SG0026	-	flagellar biosynthesis protein FlhA
27	 55.86	0	48762..49205	-	147	85058005	-	SG0027	-	flagellar protein FlgN
28	 52.89	0	49244..49468	-	74	85058006	-	SG0028	-	negative regulator of flagellin synthesis FlgM
29	 60.11	0	49511..50227	-	238	85058007	-	SG0029	-	flagellar basal body P-ring formation protein FlgA
30	 49.03	-1	50405..50818	+	137	85058008	-	SG0030	-	flagellar basal-body rod protein FlgB
31	 56.05	0	50825..51229	+	134	85058009	flgC	SG0031	-	flagellar basal body rod protein FlgC
32	 52.35	0	51241..52050	+	269	85058010	-	SG0032	-	flagellar basal-body rod modification protein FlgD
33	 49.38	-1	52102..53316	+	404	85058011	-	SG0033	-	flagellar hook protein FlgE
34	 64.16	+1	53329..54087	+	252	85058012	-	SG0034	-	flagellar basal-body rod protein FlgF
35	 57.85	0	54108..54890	+	260	85058013	flgG	SG0035	-	flagellar basal body rod protein FlgG
36	 58.40	0	54954..55715	+	253	85058014	flgH	SG0036	-	flagellar basal body L-ring protein
37	 60.02	0	55746..56843	+	365	85058015	flgI	SG0037	-	flagellar basal body P-ring protein
38	 63.62	+1	56843..57760	+	305	85058016	flgJ	SG0038	-	peptidoglycan hydrolase
39	 54.22	0	57892..59562	+	556	85058017	-	SG0039	-	flagellar hook-associated protein 1 FlgK
40	 55.84	0	59619..60560	+	313	85058018	-	SG0040	-	flagellar hook-associated protein 3 FlgL
41	 59.06	0	60611..61399	-	262	85058019	fliR	SG0041	-	flagellar biosynthesis protein FliR
42	 55.56	0	61407..61676	-	89	85058020	fliQ	SG0042	-	flagellar biosynthesis protein FliQ
43	 58.11	0	61695..62465	-	256	85058021	fliP	SG0043	-	flagellar biosynthesis protein FliP
44	 68.53	+2	62495..62869	-	124	85058022	-	SG0044	-	flagellar protein FliO
45	 60.49	0	62870..63274	-	134	85058023	-	SG0045	-	flagellar motor switch protein FliN
46	 60.41	0	63267..64289	-	340	85058024	-	SG0046	-	flagellar motor switch protein FliM
47	 50.92	0	64286..64774	-	162	85058025	-	SG0047	-	flagellar protein FliL
48	 62.02	+1	64908..66026	-	372	85058026	-	SG0048	-	flagellar hook-length control protein FliK
49	 52.22	0	66023..66472	-	149	85058027	fliJ	SG0049	-	flagellar biosynthesis chaperone
50	 60.86	+1	66483..67859	-	458	85058028	fliI	SG0050	-	flagellum-specific ATP synthase
51	 63.17	+1	67831..68544	-	237	85058029	fliH	SG0051	-	flagellar assembly protein H
52	 57.68	0	68537..69526	-	329	85058030	-	SG0052	-	flagellar motor switch protein FliG
53	 59.58	0	69523..71229	-	568	85058031	-	SG0053	-	flagellar basal-body M-ring protein FliF
54	 50.00	-1	71471..71794	+	107	85058032	-	SG0054	-	flagellar hook-basal body complex protein FliE
55	 41.52	-2	71863..72204	-	113	85058033	-	SG0055	-	flagellar protein FliT
56	 53.33	0	72218..72607	-	129	85058034	-	SG0056	-	flagellar protein FliS
57	 50.24	0	72688..74148	-	486	85058035	-	SG0057	-	flagellar hook-associated protein 2 FliD
58	 48.49	-1	74875..76134	+	419	85058036	-	SG0058	-	flagellin FliC
59	 60.19	0	76289..77014	+	241	85058037	fliA	SG0059	-	flagellar biosynthesis sigma factor
60	 53.73	0	77593..79200	+	535	85058038	-	SG0060	-	dipeptide ABC transporter periplasmic component
61	 58.92	0	79401..80420	+	339	85058039	-	SG0061	-	dipeptide transporter permease DppB
62	 61.37	+1	80432..81337	+	301	85058040	-	SG0062	-	dipeptide transporter
63	 60.04	0	81348..82328	+	326	85058041	dppD	SG0063	-	dipeptide transporter ATP-binding subunit
64	 56.97	0	82325..83335	+	336	85058042	dppF	SG0064	-	dipeptide transporter ATP-binding subunit
65	 33.33	-2	84328..84642	-	104	85058043	-	SG0065	-	hypothetical protein
66	 58.67	0	94714..95814	+	366	85058044	-	SG0066	-	hypothetical protein
67	 57.32	0	98463..99404	-	313	85058045	-	SG0067	-	ketodeoxygluconokinase
68	 55.58	0	104605..105957	-	450	85058046	-	SG0068	-	glutathione reductase
69	 58.48	0	106056..106898	-	280	85058047	-	SG0069	-	hypothetical protein
70	 51.38	0	107125..107667	+	180	85058048	-	SG0070	-	putative transposase
71	 54.49	0	108772..110085	+	437	85058049	-	SG0071	-	cytosine transport protein
72	 58.50	0	111196..111648	+	150	85058050	-	SG0072	-	hypothetical protein
73	 57.38	0	112733..114757	+	674	85058051	-	SG0073	-	oligopeptidase A
74	 51.83	0	116767..117231	-	154	85058052	-	SG0074	-	universal stress protein A
75	 58.60	0	118069..119667	-	532	85058053	-	SG0075	-	low-affinity inorganic phosphate transport protein
76	 55.61	0	121369..122535	-	388	85058054	-	SG0076	-	putative salicylate hydroxylase
77	 54.90	0	126303..126863	-	186	85058055	-	SG0077	-	hypothetical protein
78	 52.85	0	127001..127666	-	221	85058056	-	SG0078	-	hypothetical protein
79	 61.18	+1	127863..128117	+	84	85058057	-	SG0079	-	hypothetical protein
80	 55.82	0	128145..128771	-	208	85058058	-	SG0080	-	hypothetical protein
81	 47.98	-1	128966..129286	+	106	85058059	-	SG0081	-	hypothetical protein
82	 51.20	0	129363..129653	-	96	85058060	-	SG0082	-	hypothetical protein
83	 61.88	+1	129640..130245	-	201	85058061	-	SG0083	-	16S rRNA m(2)G966-methyltransferase
84	 59.93	0	130474..131988	+	504	85058062	-	SG0084	-	cell division protein
85	 56.20	0	131995..132663	+	222	85058063	-	SG0085	-	cell division protein FtsE
86	 59.69	0	132653..133669	+	338	85058064	ftsX	SG0086	-	cell division protein FtsX
87	 56.99	0	133828..134685	+	285	85058065	-	SG0087	-	RNA polymerase factor sigma-32
88	 57.64	0	134822..135220	-	132	85058066	-	SG0088	-	hypothetical protein
89	 53.55	0	136547..137278	+	243	85058067	-	SG0089	-	glycerol-3-phosphate ABC transporter permease component
90	 52.29	0	139775..140539	+	254	85058068	-	SG0090	-	hypothetical protein
91	 59.65	0	140708..141619	-	303	85058069	-	SG0091	-	LysR family transcriptional regulator
92	 58.59	0	141722..143998	+	758	85058070	-	SG0092	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
93	 60.72	0	145857..146327	+	156	85058071	-	SG0093	-	hypothetical protein
94	 56.56	0	150427..150891	+	154	85058072	-	SG0094	-	phage lysozyme lysis protein
95	 57.95	0	152777..154003	+	408	85058073	-	SG0095	-	hypothetical protein
96	 53.52	0	154000..154653	+	217	85058074	-	SG0096	-	hypothetical protein
97	 57.21	0	154660..155484	+	274	85058075	-	SG0097	-	hypothetical protein
98	 51.41	0	156879..157802	+	307	85058076	-	SG0098	-	transposase
99	 48.40	-1	158286..158690	+	134	85058077	-	SG0099	-	hypothetical protein
100	 47.49	-1	165067..165843	+	258	85058078	-	SG0100	-	putative N-acetylmuramoyl-L-alanine amidase
55.45	MEAN

5.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.