IslandPath Analysis: Streptococcus pyogenes SSI-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.53   STD DEV: 3.74
Streptococcus pyogenes SSI-1, complete genome - 1..1894275
1861 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.26	-1	232..1587	+	451	28894913	dnaA	SPs0001	-	chromosomal replication initiation protein
2	 33.42	-1	1742..2878	+	378	28894914	-	SPs0002	-	DNA polymerase III subunit beta
3	 32.32	-1	2953..3150	+	65	28894915	-	SPs0003	-	hypothetical protein
4	 37.28	0	3480..4595	+	371	28894916	-	SPs0004	-	translation-associated GTPase
5	 31.75	-1	4665..5234	+	189	28894917	-	SPs0005	-	peptidyl-tRNA hydrolase
6	 35.42	0	5237..8740	+	1167	28894918	-	SPs0006	-	putative transcription-repair coupling factor
7	 30.98	-2	8878..9174	+	98	28894919	-	SPs0007	-	hypothetical protein
8	 26.34	-2	9161..9532	+	123	28894920	-	SPs0008	-	putative cell division protein (DivIC)
9	 26.98	-2	9529..9654	+	41	28894921	-	SPs0009	-	hypothetical protein
10	 31.47	-1	9667..10953	+	428	28894922	-	SPs0010	-	hypothetical protein
11	 28.52	-2	10950..12236	+	428	28894923	-	SPs0011	-	putative cell cycle protein
12	 30.76	-2	12241..12783	+	180	28894924	-	SPs0012	-	hypoxanthine-guanine phosphoribosyltransferase
13	 37.63	0	12805..14784	+	659	28894925	-	SPs0013	-	putative cell division protein
14	 32.58	-1	15041..16501	+	486	28894926	-	SPs0014	-	putative amino acid permease
15	 40.69	0	25194..26390	+	398	28894927	-	SPs0015	-	putative secreted protein streptputative secreted protein
16	 38.94	0	26643..27605	+	320	28894928	-	SPs0016	-	ribose-phosphate pyrophosphokinase
17	 31.22	-1	27791..28546	+	251	28894929	recO	SPs0017	-	DNA repair protein RecO
18	 38.10	0	28649..29656	+	335	28894930	-	SPs0018	-	putative glycerol-3-phosphate acyltransferase PlsX
19	 30.86	-2	29649..29891	+	80	28894931	-	SPs0019	-	acyl carrier protein
20	 35.78	0	30013..30747	+	244	28894932	-	SPs0020	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
21	 44.82	+1	30872..34597	+	1241	28894933	-	SPs0021	-	putative phosphoribosylformylglycinamidine synthase II
22	 38.76	0	34831..36285	+	484	28894934	-	SPs0022	-	amidophosphoribosyltransferase
23	 42.82	+1	36313..37335	+	340	28894935	-	SPs0023	-	phosphoribosylaminoimidazole synthetase
24	 47.03	+2	37503..38057	+	184	28894936	purN	SPs0024	-	phosphoribosylglycinamide formyltransferase
25	 47.16	+2	38241..39788	+	515	28894937	purH	SPs0025	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
26	 39.29	0	39847..40971	-	374	28894938	-	SPs0026	-	putative choline binding protein
27	 47.20	+2	41136..42491	+	451	28894939	-	SPs0027	-	phosphoribosylamine--glycine ligase
28	 48.69	+2	42649..43260	+	203	28894940	-	SPs0028	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
29	 50.09	+2	43211..44320	+	369	28894941	-	SPs0029	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
30	 28.71	-2	44341..45681	+	446	28894942	-	SPs0030	-	hypothetical protein
31	 44.86	+1	46050..47342	+	430	28894943	-	SPs0031	-	adenylosuccinate lyase
32	 29.61	-2	47473..48384	+	303	28894944	-	SPs0032	-	hypothetical protein
33	 39.64	0	48604..49602	+	332	28894945	ruvB	SPs0033	-	Holliday junction DNA helicase B
34	 35.62	0	49740..50177	+	145	28894946	-	SPs0034	-	putative protein-tyrosine phosphatase
35	 35.07	0	50200..50601	+	133	28894947	-	SPs0035	-	hypothetical protein
36	 36.71	0	50598..52373	+	591	28894948	-	SPs0036	-	putative acyltransferase
37	 40.33	0	52682..55324	+	880	28894949	-	SPs0037	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
38	 42.38	+1	55577..56593	+	338	161486361	-	SPs0038	-	alcohol dehydrogenase
39	 41.63	0	56981..58270	+	429	28894951	-	SPs0039	-	Na+ driven multidrug efflux pump
40	 40.13	0	58469..58777	+	102	28894952	rpsJ	SPs0040	-	30S ribosomal protein S10
41	 30.63	-2	58840..58950	+	36	28894953	-	SPs0041	-	hypothetical protein
42	 41.95	0	59025..59651	+	208	28894954	rplC	SPs0042	-	50S ribosomal protein L3
43	 42.31	+1	59675..60298	+	207	28894955	rplD	SPs0043	-	50S ribosomal protein L4
44	 37.37	0	60298..60594	+	98	28894956	rplW	SPs0044	-	50S ribosomal protein L23
45	 43.65	+1	60612..61445	+	277	161486360	rplB	SPs0045	-	50S ribosomal protein L2
46	 40.50	0	61584..61862	+	92	28894958	rpsS	SPs0046	-	30S ribosomal protein S19
47	 39.71	0	61878..62222	+	114	28894959	rplV	SPs0047	-	50S ribosomal protein L22
48	 41.44	0	62235..62888	+	217	161486359	rpsC	SPs0048	-	30S ribosomal protein S3
49	 43.24	+1	62892..63305	+	137	28894961	rplP	SPs0049	-	50S ribosomal protein L16
50	 34.78	-1	63315..63521	+	68	28894962	rpmC	SPs0050	-	50S ribosomal protein L29
51	 38.31	0	63547..63807	+	86	28894963	rpsQ	SPs0051	-	30S ribosomal protein S17
52	 44.17	+1	63832..64200	+	122	28894964	rplN	SPs0052	-	50S ribosomal protein L14
53	 36.60	0	64279..64584	+	101	28894965	rplX	SPs0053	-	50S ribosomal protein L24
54	 40.52	0	64608..65150	+	180	28894966	rplE	SPs0054	-	50S ribosomal protein L5
55	 39.25	0	65166..65351	+	61	28894967	rpsN	SPs0055	-	30S ribosomal protein S14
56	 36.84	0	65502..65900	+	132	28894968	rpsH	SPs0056	-	30S ribosomal protein S8
57	 38.92	0	66103..66639	+	178	28894969	rplF	SPs0057	-	50S ribosomal protein L6
58	 44.19	+1	66834..67100	+	88	28894970	-	SPs0058	-	50S ribosomal protein L18
59	 42.42	+1	67119..67613	+	164	28894971	rpsE	SPs0059	-	30S ribosomal protein S5
60	 37.16	0	67628..67810	+	60	28894972	rpmD	SPs0060	-	50S ribosomal protein L30
61	 39.68	0	68026..68466	+	146	28894973	rplO	SPs0061	-	50S ribosomal protein L15
62	 36.48	0	68483..69787	+	434	28894974	secY	SPs0062	-	preprotein translocase subunit SecY
63	 39.44	0	69937..70575	+	212	28894975	adk	SPs0063	-	adenylate kinase
64	 36.26	0	70741..70911	+	56	28894976	-	SPs0064	-	putative translation initiation factor IF-1
65	 37.61	0	70937..71053	+	38	28894977	rpmJ	SPs0065	-	50S ribosomal protein L36
66	 39.34	0	71071..71436	+	121	28894978	rpsM	SPs0066	-	30S ribosomal protein S13
67	 44.01	+1	71454..71837	+	127	28894979	-	SPs0067	-	30S ribosomal protein S11
68	 37.91	0	71883..72821	+	312	28894980	-	SPs0068	-	DNA-directed RNA polymerase subunit alpha
69	 40.57	0	72836..73222	+	128	28894981	rplQ	SPs0069	-	50S ribosomal protein L17
70	 33.78	-1	81975..82418	+	147	28894982	-	SPs0070	-	putative repressor protein
71	 40.83	0	82422..83141	+	239	28894983	-	SPs0071	-	putative ABC transporter ATP-binding protein
72	 38.69	0	83128..83949	+	273	28894984	-	SPs0072	-	putative ABC transporter (permease)
73	 40.62	0	83989..84372	-	127	28894985	-	SPs0073	-	putative histidine triad (HIT) protein
74	 41.61	0	84428..85684	-	418	28894986	-	SPs0074	-	tyrosyl-tRNA synthetase
75	 40.29	0	85776..88088	+	770	28894987	-	SPs0075	-	putative penicillin-binding protein 1b
76	 43.06	+1	88352..91918	+	1188	28894988	rpoB	SPs0076	-	DNA-directed RNA polymerase subunit beta
77	 44.12	+1	92036..95632	+	1198	28894989	-	SPs0077	-	DNA-directed RNA polymerase subunit beta'
78	 34.97	0	95784..96149	+	121	28894990	-	SPs0078	-	putative DNA binding protein
79	 37.59	0	96242..97180	+	312	28894991	-	SPs0079	-	putative ABC transporter (subunit ComYA)
80	 35.57	0	97302..98150	+	282	28894992	-	SPs0080	-	putative competence protein, ABC transporter subunit
81	 34.83	0	98212..98478	+	88	28894993	-	SPs0081	-	putative competence protein
82	 33.56	-1	98438..98881	+	147	28894994	-	SPs0082	-	putative competence protein
83	 38.82	0	98886..99122	+	78	28894995	-	SPs0083	-	hypothetical protein
84	 35.40	0	99115..99549	+	144	28894996	-	SPs0084	-	putative competence protein
85	 35.47	0	99533..99859	+	108	28894997	-	SPs0085	-	hypothetical protein
86	 38.16	0	99957..100910	+	317	28894998	-	SPs0086	-	hypothetical protein
87	 39.10	0	100969..102165	+	398	28894999	-	SPs0087	-	acetate kinase
88	 35.92	0	102366..102674	+	102	28895000	-	SPs0088	-	hypothetical protein
89	 43.58	+1	102757..103527	-	256	28895001	-	SPs0089	-	pyrroline-5-carboxylate reductase
90	 45.51	+1	103575..104642	-	355	28895002	-	SPs0090	-	putative glutamyl-aminopeptidase
91	 38.18	0	104752..104916	-	54	28895003	-	SPs0091	-	hypothetical protein
92	 37.07	0	105098..105391	+	97	28895004	-	SPs0092	-	hypothetical protein
93	 34.91	0	105388..105705	+	105	28895005	-	SPs0093	-	putative H-type thioredoxin
94	 42.58	+1	105723..106349	+	208	28895006	-	SPs0094	-	hypothetical protein
95	 38.13	0	106501..106896	+	131	28895007	-	SPs0095	-	single-strand DNA-binding protein
96	 39.88	0	107156..107797	-	213	28895008	-	SPs0096	-	hypothetical protein
97	 45.81	+1	107817..108794	-	325	28895009	-	SPs0097	-	tRNA-dihydrouridine synthase
98	 41.92	0	108781..109653	-	290	28895010	hslO	SPs0098	-	Hsp33-like chaperonin
99	 31.97	-1	109779..111314	-	511	28895011	-	SPs0099	-	Nra
100	 35.03	0	111745..113979	+	744	28895012	-	SPs0100	-	Cpa
38.53	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.