IslandPath Analysis: Bradyrhizobium sp. ORS278



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.78   STD DEV: 3.31
Bradyrhizobium sp. ORS278, complete genome - 1..7456587
6717 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.13	0	936..2366	+	476	146337176	dnaA	BRADO0001	-	chromosomal replication initiation protein
2	 66.22	0	2659..3777	+	372	146337177	dnaN	BRADO0002	-	DNA polymerase III subunit beta
3	 70.54	+1	3998..5134	+	378	146337178	recF	BRADO0003	-	recombination protein F
4	 64.94	0	5434..7872	+	812	146337179	gyrB	BRADO0004	-	DNA gyrase subunit B
5	 69.29	+1	8037..9332	+	431	146337180	murA	BRADO0005	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
6	 64.79	0	9479..9958	+	159	146337181	-	BRADO0006	-	hypothetical protein
7	 63.32	0	10145..10891	-	248	146337182	-	BRADO0007	-	hypothetical protein
8	 67.19	0	11087..11854	-	255	146337183	-	BRADO0008	-	LuxR family transcriptional regulator
9	 67.25	0	12876..14252	+	458	146337184	-	BRADO0009	-	putative MATE efflux family protein; putative multidrug resistance protein norM (multidrug-efflux transporter)
10	 71.30	+1	14255..15397	-	380	146337185	-	BRADO0010	-	hypothetical protein
11	 66.59	0	15509..16879	+	456	146337186	-	BRADO0011	-	putative MmgE/PrpD family protein
12	 68.94	0	16888..18294	-	468	146337187	-	BRADO0012	-	putative Beta-lactamase family protein; putative 6-aminohexanoate-dimer hydrolase
13	 68.99	0	18436..19512	-	358	146337188	-	BRADO0013	-	AraC family transcriptional regulator
14	 67.21	0	19653..20570	+	305	146337189	-	BRADO0014	-	putative Pirin family protein
15	 64.92	0	20610..21524	+	304	146337190	-	BRADO0015	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
16	 68.84	0	22286..23206	-	306	146337191	-	BRADO0017	-	LysR family transcriptional regulator
17	 67.33	0	23302..24057	+	251	146337192	-	BRADO0018	-	putative short-chain dehydrogenases/reductases (SDR) family protein
18	 62.93	0	24176..24550	+	124	146337193	-	BRADO0019	-	hypothetical protein
19	 66.22	0	24761..25438	-	225	146337194	-	BRADO0020	-	putative nitroreductase family protein
20	 63.86	0	25530..26207	-	225	146337195	-	BRADO0021	-	putative haloacid dehalogenase-like hydrolase family protein; putative phosphoglycolate phosphatase
21	 67.04	0	26298..27095	-	265	146337196	-	BRADO0022	-	putative aspartate/ornithine carbamoyltransferase family protein
22	 68.23	0	27293..28381	+	362	146337197	-	BRADO0023	-	putative mandelate racemase/muconate lactonizing family protein
23	 66.03	0	28410..29039	-	209	146337198	-	BRADO0024	-	putative glutathione S-transferase
24	 70.37	+1	29163..29783	-	206	146337199	-	BRADO0025	-	hypothetical protein
25	 67.07	0	29960..32164	+	734	146337200	-	BRADO0026	-	sulfate transporter
26	 66.51	0	32262..32903	+	213	146337201	-	BRADO0027	-	hypothetical protein
27	 67.07	0	32922..34415	-	497	146337202	gabD	BRADO0028	-	succinate-semialdehyde dehydrogenase [NADP+] (SSDH)
28	 65.73	0	34575..34895	-	106	146337203	-	BRADO0029	-	hypothetical protein
29	 66.33	0	35238..36431	+	397	146337204	-	BRADO0030	-	putative beta-lactamase
30	 65.37	0	36744..37745	-	333	146337205	-	BRADO0031	-	adenosine kinase
31	 69.84	+1	37816..39390	+	524	146337206	-	BRADO0032	-	putative virulence factor MviN-like protein
32	 63.25	0	39440..40492	+	350	161353771	trpS	BRADO0033	-	tryptophanyl-tRNA synthetase
33	 67.68	0	40714..41208	+	164	146337208	-	BRADO0034	-	hypothetical protein
34	 65.96	0	41317..41886	+	189	146337209	-	BRADO0035	-	putative nifU protein (C-terminal fragment)
35	 63.81	0	42160..43842	-	560	146337210	-	BRADO0036	-	methyl-accepting chemotaxis protein
36	 68.66	0	44094..44795	+	233	146337211	-	BRADO0037	-	putative glycoprotease family protein
37	 62.11	-1	44792..45274	+	160	146337212	-	BRADO0038	-	putative ribosomal-protein-alanine acetyltransferase, RimI-like protein
38	 63.36	0	45318..45770	+	150	146337213	-	BRADO0039	-	ferric uptake regulator family protein
39	 66.39	0	45763..46482	+	239	146337214	-	BRADO0040	-	putative haloacid dehalogenase-like hydrolase; putative phosphatase
40	 65.88	0	46538..47941	+	467	146337215	-	BRADO0041	-	putative MiaB-like tRNA modifying enzyme
41	 66.96	0	47946..48983	+	345	146337216	-	BRADO0042	-	putative phosphate starvation-inducible protein, PhoH-like protein
42	 64.09	0	49011..49553	+	180	146337217	-	BRADO0043	-	putative metal-dependent hydrolase
43	 68.25	0	49550..50749	+	399	146337218	-	BRADO0044	-	transporter
44	 63.81	0	50746..52356	+	536	146337219	lnt	BRADO0045	-	apolipoprotein N-acyltransferase
45	 59.81	-1	52589..53011	+	140	146337220	-	BRADO0046	-	putative transcriptional regulatory protein HTH type
46	 64.72	0	53336..54466	+	376	146337221	-	BRADO0047	-	glutamate carboxypeptidase
47	 68.31	0	54463..55194	+	243	146337222	trmB	BRADO0048	-	tRNA (guanine-N(7))-methyltransferase
48	 66.20	0	55212..56288	-	358	146337223	-	BRADO0049	-	hypothetical protein
49	 68.38	0	56773..57474	+	233	146337224	-	BRADO0050	-	hypothetical protein
50	 67.54	0	57489..59096	+	535	146337225	nusA	BRADO0051	-	transcription elongation factor NusA
51	 65.59	0	59166..59909	+	247	146337226	-	BRADO0052	-	hypothetical protein
52	 69.74	+1	59989..62754	+	921	146337227	infB	BRADO0053	-	translation initiation factor IF-2
53	 61.87	-1	62918..63334	+	138	146337228	rbfA	BRADO0054	-	ribosome-binding factor A
54	 65.94	0	63334..64431	+	365	146337229	truB	BRADO0055	-	tRNA pseudouridine synthase B
55	 61.11	-1	64434..64703	+	89	146337230	rpsO	BRADO0056	-	30S ribosomal protein S15
56	 65.56	0	65060..67219	+	719	146337231	pnp	BRADO0057	-	polynucleotide phosphorylase/polyadenylase
57	 66.03	0	67425..67892	+	155	146337232	-	BRADO0058	-	hypothetical protein
58	 66.30	0	68024..68848	+	274	146337233	-	BRADO0059	-	putative signal peptide
59	 66.62	0	68882..70864	-	660	146337234	-	BRADO0060	-	hypothetical protein
60	 67.04	0	71097..71903	-	268	146337235	fabI	BRADO0061	-	enoyl-[acyl-carrier-protein] reductase [NADH] (NADH-dependent enoyl-ACP reductase)
61	 64.71	0	72036..73259	-	407	146337236	fabB	BRADO0062	-	3-oxoacyl-(acyl carrier protein) synthase I
62	 64.18	0	73336..73857	-	173	146337237	fabA	BRADO0063	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
63	 64.06	0	74366..74749	+	127	146337238	-	BRADO0064	-	ferric uptake regulation protein
64	 65.13	0	74857..75378	-	173	146337239	-	BRADO0065	-	putative signal peptide
65	 66.17	0	75734..76735	+	333	146337240	-	BRADO0066	-	putative D-isomer specific 2-hydroxyacid dehydrogenases family protein; putative glyoxylate reductase (glycolate reductase)
66	 70.37	+1	76847..77791	-	314	146337241	-	BRADO0067	-	LysR family transcriptional regulator
67	 67.36	0	77907..78911	+	334	146337242	-	BRADO0068	-	oxidoreductase
68	 67.16	0	79118..79921	-	267	146337243	-	BRADO0069	-	putative molybdopterin biosynthesis protein moeB
69	 68.71	0	80061..81428	+	455	146337244	-	BRADO0070	-	hypothetical protein
70	 68.78	0	81858..82661	+	267	146337245	-	BRADO0071	-	hypothetical protein
71	 64.60	0	82971..83453	-	160	146337246	-	BRADO0073	-	putative cAMP-binding protein
72	 66.21	0	83514..84395	-	293	146337247	mutM	BRADO0074	-	bifunctional formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase mutM
73	 64.83	0	84502..85263	+	253	146337248	ubiE	BRADO0075	-	ubiquinone/menaquinone biosynthesis methyltransferase
74	 68.00	0	85260..86834	+	524	146337249	ubiB	BRADO0076	-	ubiquinone biosynthesis protein ubiB
75	 69.19	+1	87140..88567	+	475	146337250	coaBC	BRADO0077	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
76	 70.81	+1	88564..89022	+	152	146337251	dut	BRADO0078	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
77	 68.34	0	89215..91722	+	835	146337252	-	BRADO0079	-	putative sensor histidine kinase
78	 68.56	0	91719..93248	+	509	146337253	-	BRADO0080	-	bifunctional ATPase/phosphotransferase
79	 63.40	0	93554..93859	+	101	146337254	-	BRADO0081	-	hypothetical protein
80	 68.05	0	94016..94738	+	240	146337255	-	BRADO0082	-	putative nucleotidyl transferase family protein; putative mannose-1-phosphate guanyltransferase
81	 69.53	+1	95216..98362	+	1048	146337256	-	BRADO0083	-	helicase-exonuclease type V family protein AddB subunit
82	 68.74	0	98359..101829	+	1156	146337257	-	BRADO0084	-	helicase-exonuclease type V family protein AddA subunit
83	 65.43	0	101929..102252	+	107	146337258	trxA	BRADO0085	-	thioredoxin 1, redox factor
84	 67.06	0	102527..103540	+	337	146337259	ligC	BRADO0086	-	ATP-dependent DNA ligase
85	 64.78	0	103541..104281	-	246	146337260	-	BRADO0087	-	putative phosphoesterase
86	 66.22	0	104295..105638	-	447	146337261	-	BRADO0088	-	folC bifunctional protein
87	 67.31	0	105635..106573	-	312	146337262	accD	BRADO0089	-	acetyl-CoA carboxylase subunit beta
88	 68.94	0	106668..107504	-	278	146337263	trpA	BRADO0090	-	tryptophan synthase subunit alpha
89	 65.03	0	107501..108724	-	407	146337264	trpB	BRADO0091	-	tryptophan synthase subunit beta
90	 65.45	0	108721..109380	-	219	146337265	trpF	BRADO0092	-	N-(5'-phosphoribosyl)anthranilate isomerase
91	 67.94	0	109459..109851	-	130	146337266	-	BRADO0093	-	putative signal peptide
92	 63.52	0	109930..110247	-	105	146337267	ihfB	BRADO0094	-	integration host factor subunit beta
93	 65.44	0	110415..111395	-	326	146337268	-	BRADO0095	-	S49 family peptidase
94	 62.87	0	111819..113528	-	569	146337269	rpsA	BRADO0096	-	30S ribosomal protein S1
95	 66.67	0	113798..114436	-	212	146337270	cmk	BRADO0097	-	cytidylate kinase (CK) (cytidine monophosphate kinase) (CMP kinase)
96	 69.28	+1	114433..115770	-	445	146337271	aroA	BRADO0098	-	3-phosphoshikimate 1-carboxyvinyltransferase
97	 64.44	0	115920..116324	+	134	146337272	-	BRADO0099	-	hypothetical protein
98	 60.32	-1	116707..116958	+	83	146337273	-	BRADO0100	-	excinuclease ABC subunit C
99	 66.45	0	116966..117421	-	151	146337274	ohrR	BRADO0101	-	organic hydroperoxide resistance transcriptional regulator
100	 68.78	0	117594..118019	+	141	146337275	ohr	BRADO0102	-	organic hydroperoxide resistance protein
65.78	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.