IslandPath Analysis: Rhizobium leguminosarum bv. viciae 3841



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.51   STD DEV: 3.25
Rhizobium leguminosarum bv. viciae 3841, complete genome - 1..5057142
4694 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.98	0	474..1295	+	273	116249767	-	RL0001	-	hypothetical protein
2	 60.33	0	1329..1928	+	199	116249768	-	RL0002	-	Maf-like protein
3	 61.54	0	1921..2778	+	285	116249769	aroE	RL0003	-	shikimate 5-dehydrogenase
4	 58.82	0	2778..3389	+	203	116249770	-	RL0004	-	putative dephospho-CoA kinase
5	 59.34	0	3382..4104	+	240	116249771	-	RL0005	-	DNA polymerase III subunit epsilon
6	 59.21	0	4172..4654	-	160	116249772	secB	RL0006	-	preprotein translocase subunit SecB
7	 60.47	0	4756..5271	-	171	116249773	fxsA	RL0007	-	FxsA
8	 61.28	0	5394..6098	+	234	116249774	-	RL0008	-	hypothetical protein
9	 62.02	0	6091..7209	+	372	116249775	mltA	RL0009	-	putative membrane-bound lytic murein transglycosylase a precursor
10	 65.43	+1	7209..7775	+	188	116249776	-	RL0010	-	Smr domain-containing protein
11	 60.58	0	7772..8149	+	125	116249777	-	RL0011	-	putative transcriptional regulator
12	 61.21	0	8285..10720	+	811	116249778	gyrB	RL0012	-	DNA gyrase subunit B
13	 61.50	0	10828..11427	-	199	116249779	-	RL0013	-	putative oxidoreductase
14	 57.58	-1	11473..11769	-	98	116249780	-	RL0014	-	hypothetical protein
15	 57.87	-1	11922..12887	+	321	116249781	-	RL0015	-	putative glutathione-S-transferase
16	 57.89	-1	13031..13873	+	280	116249782	-	RL0016	-	putative FAA hydrolase family protein
17	 59.47	0	14079..15356	+	425	116249783	-	RL0017	-	putative PHB depolymerase
18	 60.46	0	15502..15936	+	144	116249784	-	RL0018	-	putative transmembrane protein
19	 62.19	0	16044..16802	+	252	116249785	-	RL0019	-	hypothetical protein
20	 57.40	-1	16969..17637	+	222	116249786	-	RL0020	-	N-(5'-phosphoribosyl)anthranilate isomerase
21	 61.10	0	17640..18860	+	406	116249787	trpB	RL0021	-	tryptophan synthase subunit beta
22	 62.50	0	18864..19703	+	279	116249788	trpA	RL0022	-	tryptophan synthase subunit alpha
23	 60.04	0	19845..20750	+	301	116249789	-	RL0023	-	acetyl-CoA carboxylase subunit beta
24	 61.57	0	20778..22130	+	450	116249790	folC	RL0024	-	putative FolC bifunctional protein [Includes: folylpolyglutamate synthase (Folylpoly-gamma-glutamate synthetase) (FPGS); dihydrofolate synthase]
25	 55.45	-1	22203..22523	-	106	116249791	-	RL0025	-	putative thioredoxin
26	 63.32	0	22599..26150	-	1183	116249792	-	RL0026	-	ATP-dependent UvrD family DNA helicase
27	 64.72	0	26143..29334	-	1063	116249793	-	RL0027	-	hypothetical protein
28	 59.15	0	29338..30069	-	243	116249794	-	RL0028	-	putative nucleotidyltransferase protein
29	 61.13	0	30083..31600	-	505	116249795	-	RL0029	-	hypothetical protein
30	 63.69	0	31597..34182	-	861	116249796	-	RL0030	-	putative two-component sensor histidine kinase transcriptional regulatory protein
31	 60.03	0	34386..35786	-	466	116249797	-	RL0031	-	S-adenosyl-L-homocysteine hydrolase
32	 60.51	0	35943..36218	-	91	116249798	-	RL0032	-	putative phosphocarrier protein HPr
33	 57.21	-1	36228..36629	-	133	116249799	-	RL0033	-	PTS system, mannose-specific IIAB component (EIIAB-Man) (mannose-permease IIAB component) (phosphotransferase enzyme II, AB component) (EIII-Man)
34	 63.36	0	36780..37232	-	150	116249800	-	RL0034	-	hypothetical protein
35	 63.09	0	37229..39019	-	596	116249801	-	RL0035	-	sensor protein chvG (histidine kinase sensory protein exoS)
36	 62.45	0	39204..39938	-	244	116249802	-	RL0036	-	putative two-component response regulator transcriptional regulatory protein
37	 62.26	0	40276..41886	+	536	116249803	pckA	RL0037	-	phosphoenolpyruvate carboxykinase
38	 61.94	0	41993..42436	+	147	116249804	-	RL0038	-	hypothetical protein
39	 62.75	0	42438..43049	+	203	116249805	-	RL0039	-	putative alkylated DNA repair protein
40	 59.34	0	43056..44051	-	331	116249806	coaA	RL0040	-	pantothenate kinase
41	 58.64	0	44048..44371	-	107	116249807	hisE	RL0041	-	phosphoribosyl-ATP pyrophosphatase
42	 63.75	0	44389..45177	-	262	116249808	hisF	RL0042	-	imidazole glycerol phosphate synthase subunit HisF
43	 62.38	0	45178..45924	-	248	116249809	hisA	RL0043	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
44	 59.50	0	45931..46488	-	185	116249810	-	RL0044	-	hypothetical protein
45	 59.90	0	46485..46676	-	63	116249811	-	RL0045	-	hypothetical protein
46	 62.21	0	46921..47571	-	216	116249812	hisH	RL0046	-	imidazole glycerol phosphate synthase subunit HisH
47	 61.93	0	47574..48059	-	161	116249813	-	RL0047	-	putative transmembrane protein
48	 60.59	0	48082..48690	-	202	116249814	hisB	RL0048	-	imidazoleglycerol-phosphate dehydratase
49	 60.42	0	48847..49374	+	175	116249815	hslV	RL0049	-	ATP-dependent protease peptidase subunit
50	 58.87	0	49361..49873	+	170	116249816	-	RL0050	-	putative Mutant AAC6'-IbY166A 6'-N-acetyltransferase.
51	 61.31	0	49870..51177	+	435	116249817	hslU	RL0051	-	ATP-dependent protease ATP-binding subunit
52	 59.07	0	51470..52417	+	315	116249818	-	RL0052	-	hypothetical protein
53	 60.93	0	52466..53878	+	470	116249819	-	RL0053	-	cytochrome P450 4A3 precursor (CYPIVA3) (Lauric acid omega-hydroxylase) (P450-LA-omega 3)
54	 61.74	0	53965..56136	+	723	116249820	glcB	RL0054	-	malate synthase G
55	 63.16	0	56207..56890	-	227	116249821	-	RL0055	-	hypothetical protein
56	 57.78	-1	57070..57564	+	164	116249822	-	RL0056	-	hypothetical protein
57	 63.73	0	57585..58163	-	192	116249823	-	RL0057	-	putative two-component response regulator transcriptional regulatory protein
58	 60.95	0	58232..59560	-	442	116249824	-	RL0058	-	putative two-component regulator sensor histidine kinase transcriptional regulator
59	 66.46	+1	59583..62048	-	821	116249825	-	RL0059	-	putative ATP-dependent helicase protein
60	 65.51	+1	62045..62992	-	315	116249826	-	RL0060	-	ornithine cyclodeaminase
61	 58.22	-1	70180..71670	-	496	116249827	-	RL0061	-	putative alpha-amylase family protein
62	 56.59	-1	71667..74426	-	919	116249828	-	RL0062	-	hypothetical protein
63	 54.34	-2	74746..76002	-	418	116249829	-	RL0063	-	hypothetical protein
64	 58.56	0	76906..78225	-	439	116249830	-	RL0064	-	hypothetical protein
65	 61.27	0	78231..82121	-	1296	116249831	-	RL0065	-	putative glycosyl transferase
66	 57.91	-1	82152..84617	-	821	116249832	-	RL0066	-	putative phosphoketolase
67	 58.00	-1	84994..85662	-	222	116249833	-	RL0067	-	CBS domain-containing protein
68	 56.54	-1	85775..87463	-	562	116249834	-	RL0068	-	putative component of ABC transporter
69	 59.76	0	87586..89265	-	559	116249835	-	RL0069	-	putative cellulose biosynthesis protein
70	 58.13	-1	89508..89999	-	163	116249836	-	RL0070	-	hypothetical protein
71	 60.30	0	90117..91466	-	449	116249837	-	RL0071	-	hypothetical protein
72	 61.66	0	91472..93769	-	765	116249838	-	RL0072	-	putative ATP-binding component of ABC transporter
73	 58.37	0	93795..95831	-	678	116249839	-	RL0073	-	hypothetical protein
74	 57.89	-1	95973..96929	-	318	116249840	-	RL0074	-	hypothetical protein
75	 54.28	-2	97773..98555	+	260	116249841	-	RL0075	-	GerE family transcriptional regulator
76	 63.55	0	98571..98891	-	106	116249842	-	RL0076	-	hypothetical protein
77	 60.72	0	99276..100301	+	341	116249843	-	RL0077	-	putative dTDP-glucose 4-6-dehydratase-like protein (UDP-glucuronic acid decarboxylase)
78	 63.52	0	100303..101286	+	327	116249844	exoB	RL0078	-	putative UDP-glucose 4-epimerase (UDP-galactose 4-epimerase)
79	 61.69	0	101283..103151	+	622	116249845	acsAB	RL0079	-	putative transmembrane cellulose synthase
80	 62.41	0	103148..103711	+	187	116249846	-	RL0080	-	hypothetical protein
81	 61.83	0	103715..104686	+	323	116249847	-	RL0081	-	putative polysaccharide degradation protein
82	 61.77	0	104748..106034	-	428	116249848	-	RL0082	-	putative solute-binding component of ABC transporter
83	 64.12	0	106182..107201	+	339	116249849	-	RL0083	-	LacI family transcriptional regulator
84	 62.57	0	107329..109185	+	618	116249850	-	RL0084	-	hypothetical protein
85	 62.61	0	109182..110192	+	336	116249851	-	RL0085	-	putative glycerate dehydrogenase
86	 58.84	0	110281..111609	-	442	116249852	-	RL0086	-	GFO/IDH/MocA family oxidoreductase
87	 63.27	0	111710..112534	-	274	116249853	-	RL0087	-	hypothetical protein
88	 65.21	+1	112672..113835	-	387	116249854	-	RL0088	-	hypothetical protein
89	 63.10	0	113839..114987	-	382	116249855	-	RL0089	-	putative oxidoreductase
90	 61.06	0	115119..115796	-	225	116249856	-	RL0090	-	TetR family transcriptional regulator
91	 62.55	0	115995..117281	+	428	116249857	-	RL0091	-	putative ATP-binding component of ABC transporter
92	 59.27	0	117288..118247	+	319	116249858	-	RL0092	-	putative transmembrane component of ABC transporter
93	 59.50	0	118249..119127	+	292	116249859	-	RL0093	-	putative transmembrane component of ABC transporter
94	 61.92	0	119151..120224	+	357	116249860	-	RL0094	-	GFO/IDH/MocA family oxidoreductase
95	 62.67	0	120256..121332	+	358	116249861	-	RL0095	-	putative ATP-binding component of ABC transporter protein
96	 60.51	0	121601..122494	+	297	116249862	-	RL0096	-	hypothetical protein
97	 63.16	0	122495..124945	+	816	116249863	-	RL0097	-	pyruvate dehydrogenase phosphatase regulatory subunit
98	 63.92	0	125075..126532	-	485	116249864	-	RL0098	-	putative mannitol dehydrogenase
99	 64.19	0	126529..127944	-	471	116249865	-	RL0099	-	glucuronate isomerase
100	 61.43	0	128125..128334	+	69	116249866	-	RL0100	-	hypothetical protein
61.51	MEAN

3.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.