IslandPath Analysis: Chlorobium phaeovibrioides DSM 265



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.25   STD DEV: 3.40
Prosthecochloris vibrioformis DSM 265, complete genome - 1..1966858
1753 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 46.04	-2	1..1464	+	487	145218823	-	Cvib_0001	-	chromosomal replication initiator protein DnaA
2	 45.78	-2	1750..2874	+	374	145218824	-	Cvib_0002	-	DNA polymerase III, beta subunit
3	 47.31	-1	2942..4057	+	371	145218825	-	Cvib_0003	-	DNA replication and repair protein RecF
4	 48.69	-1	4060..4365	+	101	145218826	-	Cvib_0004	-	hypothetical protein
5	 46.00	-2	4433..5656	-	407	145218827	-	Cvib_0005	-	beta-lactamase domain-containing protein
6	 48.88	-1	5734..8151	-	805	145218828	-	Cvib_0006	-	DNA polymerase B region
7	 51.93	0	8286..10151	-	621	145218829	-	Cvib_0007	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
8	 49.42	-1	10568..10909	+	113	145218830	-	Cvib_0008	-	sulfide dehydrogenase (flavocytochrome), cytochrome c subunit
9	 52.01	0	10925..12220	+	431	145218831	-	Cvib_0009	-	sulfide dehydrogenase (flavocytochrome), flavoprotein subunit
10	 53.28	0	12374..14158	+	594	145218832	secD	Cvib_0010	-	preprotein translocase subunit SecD
11	 51.60	0	14183..15118	+	311	145218833	secF	Cvib_0011	-	preprotein translocase subunit SecF
12	 54.24	0	15186..16505	+	439	145218834	-	Cvib_0012	-	PpiC-type peptidyl-prolyl cis-trans isomerase
13	 52.72	0	16494..18422	-	642	145218835	-	Cvib_0013	-	DNA gyrase subunit B
14	 57.32	+1	18499..18894	-	131	145218836	-	Cvib_0014	-	hypothetical protein
15	 57.61	+1	18891..19508	-	205	145218837	-	Cvib_0015	-	ribonuclease H
16	 52.74	0	19790..21484	+	564	145218838	-	Cvib_0016	-	ribonuclease
17	 58.56	+1	21567..22430	+	287	145218839	dapD	Cvib_0017	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
18	 56.03	0	22460..24142	+	560	145218840	-	Cvib_0018	-	carboxyl-terminal protease
19	 54.46	0	24081..24809	-	242	145218841	-	Cvib_0019	-	hypothetical protein
20	 53.37	0	24810..25952	-	380	145218842	-	Cvib_0020	-	geranylgeranyl reductase
21	 54.35	0	25992..27461	-	489	145218843	-	Cvib_0021	-	glycyl-tRNA synthetase
22	 54.26	0	27562..27843	-	93	145218844	-	Cvib_0022	-	ATP-dependent Clp protease adaptor protein ClpS
23	 56.53	0	27972..28928	-	318	145218845	-	Cvib_0023	-	muramoyltetrapeptide carboxypeptidase
24	 49.44	-1	28961..29227	-	88	145218846	-	Cvib_0024	-	H+-transporting two-sector ATPase, delta/epsilon subunit
25	 53.42	0	29242..30630	-	462	145218847	-	Cvib_0025	-	F0F1 ATP synthase subunit beta
26	 52.93	0	30956..31501	+	181	145218848	-	Cvib_0026	-	redoxin domain-containing protein
27	 57.98	+1	31603..33468	+	621	145218849	-	Cvib_0027	-	phosphoenolpyruvate carboxykinase
28	 53.85	0	33740..35128	+	462	145218850	-	Cvib_0028	-	membrane protein involved in aromatic hydrocarbon degradation
29	 51.69	0	35210..35416	-	68	145218851	-	Cvib_0029	-	hypothetical protein
30	 56.66	+1	35666..37234	+	522	145218852	-	Cvib_0030	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
31	 56.91	+1	40127..41089	+	320	145218853	-	Cvib_0032	-	hypothetical protein
32	 55.01	0	41086..41514	+	142	145218854	-	Cvib_0033	-	hypothetical protein
33	 53.14	0	41640..42149	+	169	145218855	-	Cvib_0034	-	hypothetical protein
34	 56.52	0	42224..42637	+	137	145218856	-	Cvib_0035	-	rhodanese domain-containing protein
35	 52.74	0	42678..42914	+	78	145218857	-	Cvib_0036	-	SirA family protein
36	 58.64	+1	42936..44342	+	468	145218858	-	Cvib_0037	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
37	 53.57	0	44472..44807	+	111	145218859	-	Cvib_0038	-	DsrC family protein
38	 54.55	0	44864..46117	+	417	145218860	-	Cvib_0039	-	sulfite reductase, dissimilatory-type alpha subunit
39	 57.02	+1	46165..47253	+	362	145218861	-	Cvib_0040	-	sulfite reductase, dissimilatory-type beta subunit
40	 58.15	+1	47269..49005	+	578	145218862	-	Cvib_0041	-	putative glutamate synthase (NADPH) small subunit
41	 60.06	+2	49043..49405	+	120	145218863	-	Cvib_0042	-	hypothetical protein
42	 56.11	0	49455..49814	+	119	145218864	-	Cvib_0043	-	DsrE family protein
43	 50.41	0	49820..50188	+	122	145218865	-	Cvib_0044	-	DsrE family protein
44	 55.10	0	50229..50522	+	97	145218866	-	Cvib_0045	-	DsrH family protein
45	 56.60	0	50543..50989	+	148	145218867	-	Cvib_0046	-	hypothetical protein
46	 53.82	0	50986..51981	+	331	145218868	-	Cvib_0047	-	nitrate reductase, gamma subunit
47	 56.91	+1	51984..53633	+	549	145218869	-	Cvib_0048	-	DsrK protein
48	 54.26	0	53626..54012	+	128	145218870	-	Cvib_0049	-	hypothetical protein
49	 58.37	+1	54009..54767	+	252	145218871	-	Cvib_0050	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
50	 61.17	+2	54777..55922	+	381	145218872	-	Cvib_0051	-	polysulphide reductase, NrfD
51	 52.78	0	55919..56386	+	155	145218873	-	Cvib_0052	-	porphyrin biosynthesis protein, putative
52	 54.32	0	56398..57774	+	458	145218874	-	Cvib_0053	-	uroporphyrinogen-III C-methyltransferase
53	 55.41	0	58109..58810	+	233	145218875	-	Cvib_0054	-	phosphoribulokinase/uridine kinase
54	 58.97	+1	58797..60083	+	428	145218876	-	Cvib_0055	-	major facilitator transporter
55	 58.47	+1	60110..61708	-	532	145218877	-	Cvib_0056	-	EmrB/QacA family drug resistance transporter
56	 57.82	+1	61719..62690	-	323	145218878	-	Cvib_0057	-	secretion protein HlyD family protein
57	 53.63	0	62697..63164	-	155	145218879	-	Cvib_0058	-	UspA domain-containing protein
58	 58.02	+1	63161..64525	-	454	145218880	-	Cvib_0059	-	outer membrane efflux protein
59	 58.25	+1	64681..66795	+	704	145218881	-	Cvib_0060	-	Fis family transcriptional regulator
60	 58.08	+1	66958..67539	+	193	145218882	-	Cvib_0061	-	hypothetical protein
61	 48.94	-1	67900..69033	-	377	145218883	-	Cvib_0062	-	DNA-cytosine methyltransferase
62	 44.83	-2	69030..69812	-	260	145218884	-	Cvib_0063	-	hypothetical protein
63	 56.60	0	69878..73075	-	1065	145218885	-	Cvib_0064	-	UvrD/REP helicase
64	 58.53	+1	73068..75833	-	921	145218886	-	Cvib_0065	-	hypothetical protein
65	 54.69	0	75846..76421	-	191	145218887	-	Cvib_0066	-	hypothetical protein
66	 54.76	0	76501..77004	-	167	145218888	-	Cvib_0067	-	membrane-flanked domain-containing protein
67	 51.87	0	77260..77766	+	168	145218889	-	Cvib_0068	-	hypothetical protein
68	 52.92	0	78880..80799	+	639	145218890	-	Cvib_0070	-	hypothetical protein
69	 54.47	0	80817..82562	+	581	145218891	-	Cvib_0071	-	hypothetical protein
70	 50.00	0	82555..83850	+	431	145218892	-	Cvib_0072	-	hypothetical protein
71	 51.08	0	83847..89510	+	1887	145218893	-	Cvib_0073	-	DEAD/DEAH box helicase domain-containing protein
72	 51.73	0	89631..90380	-	249	145218894	-	Cvib_0074	-	hypothetical protein
73	 55.12	0	90381..92051	-	556	145218895	-	Cvib_0075	-	type III restriction enzyme, res subunit
74	 52.87	0	92053..94371	-	772	145218896	-	Cvib_0076	-	hypothetical protein
75	 51.64	0	94487..95890	-	467	145218897	-	Cvib_0077	-	DNA-cytosine methyltransferase
76	 46.93	-1	95970..96278	-	102	145218898	-	Cvib_0078	-	DNA mismatch endonuclease
77	 54.10	0	96403..97389	-	328	145218899	-	Cvib_0079	-	integrase catalytic subunit
78	 50.57	0	98045..98659	-	204	145218900	-	Cvib_0081	-	hypothetical protein
79	 41.55	-2	99164..99832	-	222	145218901	-	Cvib_0082	-	HNH endonuclease
80	 50.15	0	100915..102894	-	659	145218902	-	Cvib_0084	-	hypothetical protein
81	 48.87	-1	102878..104332	-	484	145218903	-	Cvib_0085	-	hypothetical protein
82	 56.73	+1	104370..105395	-	341	145218904	-	Cvib_0086	-	helix-turn-helix, type 11 domain-containing protein
83	 50.73	0	105503..106048	-	181	145218905	-	Cvib_0087	-	hypothetical protein
84	 45.05	-2	106128..106238	-	36	145218906	-	Cvib_0088	-	hypothetical protein
85	 55.34	0	106497..107591	+	364	145218907	-	Cvib_0089	-	hypothetical protein
86	 48.17	-1	107699..108136	+	145	145218908	-	Cvib_0090	-	hypothetical protein
87	 62.55	+2	108298..109245	+	315	145218909	-	Cvib_0091	-	ADP-ribosylation/crystallin J1
88	 54.64	0	109286..109975	+	229	145218910	-	Cvib_0092	-	hypothetical protein
89	 64.29	+2	110385..111266	-	293	145218911	-	Cvib_0093	-	hypothetical protein
90	 53.78	0	112112..117964	+	1950	145218912	-	Cvib_0094	-	superfamily I DNA/RNA helicase
91	 52.31	0	118805..119389	+	194	145218913	-	Cvib_0096	-	hypothetical protein
92	 49.40	-1	119361..120443	+	360	145218914	-	Cvib_0097	-	hypothetical protein
93	 52.81	0	120506..121198	+	230	145218915	-	Cvib_0098	-	hypothetical protein
94	 59.33	+1	121241..122752	+	503	145218916	-	Cvib_0099	-	Sel1 domain-containing protein
95	 52.17	0	122817..123299	+	160	145218917	-	Cvib_0100	-	hypothetical protein
96	 54.98	0	123944..124405	+	153	145218918	-	Cvib_0101	-	hypothetical protein
97	 55.39	0	124440..124643	+	67	145218919	-	Cvib_0102	-	hypothetical protein
98	 50.85	0	124786..125316	+	176	145218920	-	Cvib_0103	-	integrase catalytic subunit
99	 57.01	+1	125510..126658	+	382	145218921	-	Cvib_0104	-	hypothetical protein
100	 62.03	+2	126768..128234	-	488	145218922	-	Cvib_0105	-	DNA ligase, NAD-dependent
53.25	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.