IslandPath Analysis: Ochrobactrum anthropi ATCC 49188



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.82   STD DEV: 3.57
Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence - 1..1895911
1693 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 49.58	-2	3..359	+	118	153010079	-	Oant_2754	-	hypothetical protein
2	 56.01	0	366..2045	-	559	153010080	-	Oant_2755	-	hypothetical protein
3	 49.58	-2	2303..2659	+	118	153010081	-	Oant_2756	-	hypothetical protein
4	 56.01	0	2666..4345	-	559	153010082	-	Oant_2757	-	hypothetical protein
5	 51.09	-1	4602..5654	-	350	153010083	-	Oant_2758	-	helix-turn-helix domain-containing protein
6	 47.10	-2	6236..6511	+	91	153010084	-	Oant_2759	-	hypothetical protein
7	 55.50	0	6726..7988	-	420	153010085	-	Oant_2761	-	inosine/uridine-preferring nucleoside hydrolase
8	 57.61	0	9366..10436	+	356	153010086	-	Oant_2762	-	alanine racemase
9	 55.56	0	10556..11302	+	248	153010087	-	Oant_2763	-	extracellular solute-binding protein
10	 59.50	0	11519..13165	+	548	153010088	-	Oant_2764	-	polar amino acid ABC transporter, inner membrane subunit
11	 56.76	0	13146..14558	+	470	153010089	-	Oant_2765	-	Beta-glucosidase
12	 58.22	0	14551..15237	+	228	153010090	-	Oant_2766	-	short-chain dehydrogenase/reductase SDR
13	 56.45	0	15749..19075	+	1108	153010091	-	Oant_2767	-	outer membrane autotransporter
14	 57.13	0	19255..20481	-	408	153010092	-	Oant_2768	-	peptidase M24
15	 54.79	0	20700..22223	+	507	153010093	-	Oant_2769	-	extracellular solute-binding protein
16	 57.45	0	22381..23313	+	310	153010094	-	Oant_2770	-	binding-protein-dependent transport systems inner membrane component
17	 60.32	0	23310..24176	+	288	153010095	-	Oant_2771	-	binding-protein-dependent transport systems inner membrane component
18	 61.23	+1	24173..24982	+	269	153010096	-	Oant_2772	-	ABC transporter related
19	 56.71	0	24979..25731	+	250	153010097	-	Oant_2773	-	ABC transporter related
20	 55.95	0	26046..26549	+	167	153010098	-	Oant_2774	-	ECF subfamily RNA polymerase sigma-24 factor
21	 57.46	0	26576..27520	+	314	153010099	-	Oant_2775	-	anti-FecI sigma factor, FecR
22	 54.81	0	27671..30124	+	817	153010100	-	Oant_2776	-	TonB-dependent siderophore receptor
23	 57.27	0	30156..31028	+	290	153010101	-	Oant_2777	-	periplasmic binding protein
24	 57.71	0	31025..33022	+	665	153010102	-	Oant_2778	-	iron-hydroxamate transporter permease subunit
25	 58.75	0	33310..34206	+	298	153010103	-	Oant_2779	-	LysR family transcriptional regulator
26	 54.31	0	34231..34497	-	88	153010104	-	Oant_2780	-	hypothetical protein
27	 55.96	0	34747..36324	+	525	153010105	-	Oant_2781	-	extracellular solute-binding protein
28	 58.12	0	36324..37271	+	315	153010106	-	Oant_2782	-	binding-protein-dependent transport systems inner membrane component
29	 59.58	0	37268..38086	+	272	153010107	-	Oant_2783	-	binding-protein-dependent transport systems inner membrane component
30	 58.21	0	38083..39690	+	535	153010108	-	Oant_2784	-	ABC transporter related
31	 58.94	0	39749..41755	+	668	153010109	-	Oant_2785	-	peptidase S15
32	 54.14	0	41839..43395	-	518	153010110	-	Oant_2786	-	hemolysin-type calcium-binding region
33	 57.43	0	43726..44634	+	302	153010111	-	Oant_2787	-	LysR family transcriptional regulator
34	 55.73	0	44756..45916	+	386	153010112	-	Oant_2788	-	extracellular solute-binding protein
35	 57.99	0	46010..47023	+	337	153010113	-	Oant_2789	-	spermidine/putrescine ABC transporter ATPase subunit
36	 58.10	0	47020..48000	+	326	153010114	-	Oant_2790	-	binding-protein-dependent transport systems inner membrane component
37	 59.19	0	47990..48805	+	271	153010115	-	Oant_2791	-	binding-protein-dependent transport systems inner membrane component
38	 57.47	0	48822..50246	+	474	153010116	-	Oant_2792	-	gamma-aminobutyraldehyde dehydrogenase
39	 52.15	-1	50856..55952	-	1698	153010117	-	Oant_2793	-	YD repeat-containing protein
40	 41.50	-2	56355..58031	-	558	153010118	-	Oant_2794	-	hypothetical protein
41	 57.03	0	58457..59317	+	286	153010119	-	Oant_2795	-	hypothetical protein
42	 58.91	0	59390..59776	-	128	153010120	-	Oant_2796	-	L-ectoine synthase
43	 59.61	0	59811..61142	-	443	153010121	-	Oant_2797	-	amidase
44	 58.99	0	61277..61927	-	216	153010122	-	Oant_2798	-	GntR family transcriptional regulator
45	 56.29	0	61931..63463	-	510	153010123	-	Oant_2799	-	polar amino acid ABC transporter, inner membrane subunit
46	 55.87	0	63524..64384	-	286	153010124	-	Oant_2800	-	extracellular solute-binding protein
47	 54.74	0	64694..65548	-	284	153010125	-	Oant_2801	-	RpiR family transcriptional regulator
48	 53.00	-1	65609..66676	-	355	153010126	-	Oant_2802	-	extracellular solute-binding protein
49	 59.50	0	66821..67909	+	362	153010127	-	Oant_2803	-	spermidine/putrescine ABC transporter ATPase subunit
50	 56.78	0	67909..68808	+	299	153010128	-	Oant_2804	-	binding-protein-dependent transport systems inner membrane component
51	 53.07	-1	68822..69652	+	276	153010129	-	Oant_2805	-	ornithine carbamoyltransferase
52	 60.20	0	69654..70781	+	375	153010130	-	Oant_2806	-	peptidase S58 DmpA
53	 55.25	0	70970..71950	+	326	153010131	-	Oant_2807	-	monosaccharide-transporting ATPase
54	 56.97	0	72032..73537	+	501	153010132	-	Oant_2808	-	ABC transporter related
55	 55.62	0	73534..74547	+	337	153010133	-	Oant_2809	-	monosaccharide-transporting ATPase
56	 56.66	0	75063..82799	+	2578	153010134	-	Oant_2810	-	outer membrane autotransporter
57	 51.49	-1	83144..84382	-	412	153010135	-	Oant_2811	-	regulatory protein LacI
58	 55.97	0	84569..85624	+	351	153010136	-	Oant_2812	-	periplasmic binding protein/LacI transcriptional regulator
59	 57.04	0	85729..86559	+	276	153010137	-	Oant_2813	-	ABC transporter related
60	 58.88	0	86559..87803	+	414	153010138	-	Oant_2814	-	inner-membrane translocator
61	 57.89	0	87822..88550	+	242	153010139	-	Oant_2815	-	short-chain dehydrogenase/reductase SDR
62	 58.63	0	88563..90179	+	538	153010140	-	Oant_2816	-	FGGY-family pentulose kinase
63	 54.22	0	90263..93115	-	950	153010141	-	Oant_2817	-	outer membrane autotransporter
64	 55.98	0	93465..94784	+	439	153010142	-	Oant_2818	-	FAD dependent oxidoreductase
65	 58.39	0	94792..95745	-	317	153010143	-	Oant_2819	-	3-oxoacyl-(acyl carrier protein) synthase II
66	 57.33	0	95742..97016	-	424	153010144	-	Oant_2820	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
67	 58.06	0	97013..97651	-	212	153010145	-	Oant_2821	-	dithiobiotin synthetase
68	 59.97	0	97648..98796	-	382	153010146	-	Oant_2822	-	8-amino-7-oxononanoate synthase
69	 56.38	0	98789..99799	-	336	153010147	-	Oant_2823	-	biotin synthase
70	 59.38	0	100023..100859	-	278	153010148	-	Oant_2824	-	ABC transporter related
71	 59.71	0	100856..101890	-	344	153010149	-	Oant_2825	-	transport system permease protein
72	 62.55	+1	101893..102936	-	347	153010150	-	Oant_2826	-	transport system permease protein
73	 57.56	0	102933..103931	-	332	153010151	-	Oant_2827	-	periplasmic binding protein
74	 54.38	0	105179..106125	+	315	153010152	-	Oant_2829	-	transposase
75	 56.85	0	107463..108338	-	291	153010153	-	Oant_2830	-	helix-turn-helix domain-containing protein
76	 53.67	0	108529..108882	-	117	153010154	-	Oant_2831	-	cupin 2 domain-containing protein
77	 59.05	0	108957..110636	-	559	153010155	-	Oant_2832	-	binding-protein-dependent transport systems inner membrane component
78	 59.29	0	110657..111619	-	320	153010156	-	Oant_2833	-	extracellular solute-binding protein
79	 61.28	+1	111653..112729	-	358	153010157	-	Oant_2834	-	ABC transporter related
80	 54.56	0	112878..113414	+	178	153010158	-	Oant_2835	-	Lipocalin family protein
81	 58.78	0	113468..115864	-	798	153010159	-	Oant_2836	-	aldehyde dehydrogenase
82	 62.19	+1	115939..116898	-	319	153010160	-	Oant_2837	-	deoxyribose-phosphate aldolase
83	 60.21	0	116939..117883	-	314	153010161	-	Oant_2838	-	ribokinase
84	 57.62	0	117903..118985	-	360	153010162	-	Oant_2839	-	hypothetical protein
85	 58.26	0	118992..119990	-	332	153010163	-	Oant_2840	-	monosaccharide-transporting ATPase
86	 56.95	0	120005..120982	-	325	153010164	-	Oant_2841	-	monosaccharide-transporting ATPase
87	 57.49	0	120994..122496	-	500	153010165	-	Oant_2842	-	ABC transporter related
88	 57.21	0	122578..123624	-	348	153010166	-	Oant_2843	-	putative periplasmic binding protein with substrate ribose
89	 56.21	0	124084..124791	+	235	153010167	-	Oant_2844	-	DeoR family transcriptional regulator
90	 57.58	0	124793..125386	-	197	153010168	-	Oant_2845	-	TetR family transcriptional regulator
91	 59.53	0	125509..126741	+	410	153010169	-	Oant_2846	-	major facilitator transporter
92	 58.02	0	126774..127745	-	323	153010170	-	Oant_2847	-	LysR family transcriptional regulator
93	 56.49	0	127870..128655	+	261	153010171	-	Oant_2848	-	extracellular solute-binding protein
94	 60.03	0	128721..129368	+	215	153010172	-	Oant_2849	-	polar amino acid ABC transporter, inner membrane subunit
95	 55.61	0	129380..130039	+	219	153010173	-	Oant_2850	-	polar amino acid ABC transporter, inner membrane subunit
96	 59.17	0	130036..130809	+	257	153010174	-	Oant_2851	-	ABC transporter related
97	 60.51	+1	130819..132459	+	546	153010175	-	Oant_2852	-	hypothetical protein
98	 61.33	+1	132472..133839	+	455	153010176	-	Oant_2853	-	aminotransferase class-III
99	 59.81	0	133852..134799	+	315	153010177	-	Oant_2854	-	hypothetical protein
100	 57.85	0	134903..135424	+	173	153010178	-	Oant_2855	-	GCN5-related N-acetyltransferase
56.82	MEAN

3.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.