IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.10   STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.43	0	258..1100	+	280	114797376	-	HNE_0001	-	hypothetical protein
2	 61.98	0	1097..1693	+	198	114798603	-	HNE_0002	-	putative maf protein
3	 61.13	0	1690..2502	+	270	114799600	aroE	HNE_0003	-	shikimate 5-dehydrogenase
4	 61.41	0	2499..3107	+	202	114797191	coaE	HNE_0004	-	dephospho-CoA kinase
5	 61.52	0	3104..3802	+	232	114798147	dnaQ	HNE_0005	-	DNA polymerase III, epsilon subunit
6	 61.28	0	3810..4310	-	166	114798742	secB	HNE_0006	-	protein-export protein SecB
7	 63.74	0	4445..5059	+	204	114799709	-	HNE_0007	-	Tim44 domain-containing protein
8	 66.75	+1	5111..6349	+	412	114797762	-	HNE_0008	-	putative transglycosylase MltA
9	 66.48	+1	6355..6885	+	176	114798383	-	HNE_0009	-	Smr domain-containing protein
10	 61.76	0	6941..7612	-	223	114798843	-	HNE_0010	-	hypothetical protein
11	 63.90	0	7751..8725	-	324	114799986	-	HNE_0011	-	NAD(P)H quinone oxidoreductase PIG3 family protein
12	 56.99	-1	8831..9016	+	61	114798553	-	HNE_0012	-	hypothetical protein
13	 65.38	0	9083..9625	+	180	114798262	-	HNE_0013	-	hypothetical protein
14	 67.00	+1	9666..10274	-	202	114800535	-	HNE_0014	-	TetR family transcriptional regulator
15	 61.70	0	10429..11052	+	207	114797544	-	HNE_0015	-	carbonic anhydrase
16	 59.81	0	11123..11662	-	179	114798033	ppa	HNE_0016	-	inorganic pyrophosphatase
17	 58.22	-1	11772..12671	-	299	114799488	-	HNE_0017	-	LysR family transcriptional regulator
18	 61.71	0	12790..13515	+	241	114799979	-	HNE_0018	-	short chain dehydrogenase/reductase family oxidoreductase
19	 63.10	0	13582..14001	+	139	114800170	-	HNE_0019	-	carboxymuconolactone decarboxylase domain-containing protein
20	 55.26	-1	13998..14339	+	113	114799370	-	HNE_0020	-	hypothetical protein
21	 64.22	0	14352..14963	-	203	114800166	-	HNE_0021	-	hypothetical protein
22	 60.87	0	14993..15475	-	160	114800114	-	HNE_0022	-	GTP-binding protein
23	 64.34	0	15513..15899	-	128	114797927	-	HNE_0023	-	hypothetical protein
24	 60.14	0	15919..16362	-	147	114799580	-	HNE_0024	-	hypothetical protein
25	 64.42	0	16377..17000	-	207	114797696	-	HNE_0025	-	TetR family transcriptional regulator
26	 65.08	0	17211..18095	-	294	114800461	-	HNE_0026	-	hypothetical protein
27	 59.88	0	18285..18770	+	161	114798480	-	HNE_0027	-	16 kDa heat shock protein A
28	 63.65	0	18823..19851	-	342	114797893	-	HNE_0028	-	hypothetical protein
29	 63.24	0	19981..21030	+	349	114800480	-	HNE_0029	-	glycosyl transferase, group 1 family protein
30	 68.63	+1	21031..21489	-	152	114798109	-	HNE_0030	-	riboflavin biosynthesis protein RibD domain-containing protein
31	 61.20	0	21486..22199	-	237	114797148	-	HNE_0031	-	phosphoglycerate mutase 1 family protein
32	 64.39	0	22276..23418	-	380	114800103	-	HNE_0032	-	N-acylglucosamine 2-epimerase
33	 60.62	0	23546..24124	+	192	114797256	-	HNE_0033	-	hypothetical protein
34	 62.82	0	24240..26420	+	726	114799975	-	HNE_0034	-	prolyl oligopeptidase
35	 63.99	0	26519..27115	+	198	114799210	-	HNE_0035	-	hypothetical protein
36	 63.89	0	27293..28768	+	491	114799508	ffh	HNE_0036	-	signal recognition particle protein
37	 60.58	0	28765..29076	+	103	114800523	-	HNE_0037	-	chorismate mutase
38	 62.61	0	29117..29560	+	147	114799489	rpsP	HNE_0038	-	ribosomal protein S16
39	 51.31	-2	29676..31655	-	659	114798513	-	HNE_0039	-	acyltransferase family protein
40	 64.70	0	31948..32811	+	287	114797587	-	HNE_0040	-	beta/gamma crystallin family protein
41	 63.55	0	32822..33367	+	181	114798866	rimM	HNE_0041	-	16S rRNA processing protein RimM
42	 70.09	+2	33458..34978	+	506	114798164	-	HNE_0042	-	beta/gamma crystallin domain-containing protein
43	 61.60	0	34988..35737	-	249	114797767	-	HNE_0043	-	glycosyl transferase, group 2 family protein
44	 64.34	0	35891..37696	+	601	114799732	kefC	HNE_0044	-	glutathione-regulated potassium-efflux system protein KefC
45	 63.10	0	37728..38483	+	251	114797793	trmD	HNE_0045	-	tRNA (guanine-N1)-methyltransferase
46	 60.90	0	38470..39024	+	184	114797917	rplS	HNE_0046	-	50S ribosomal protein L19
47	 63.30	0	39148..40545	+	465	114800168	leuC1	HNE_0047	-	isopropylmalate isomerase large subunit
48	 61.99	0	40571..41533	+	320	114800485	bioB	HNE_0048	-	biotin synthase
49	 63.21	0	41629..42612	+	327	114799333	cysK	HNE_0049	-	cysteine synthase A
50	 60.56	0	42705..43343	+	212	114798524	-	HNE_0050	-	glutathione S-transferase
51	 63.49	0	43340..44188	+	282	114798233	-	HNE_0051	-	glyoxalase family protein
52	 60.79	0	44200..44829	+	209	114799969	leuD1	HNE_0052	-	3-isopropylmalate dehydratase, small subunit
53	 57.63	-1	44952..45272	+	106	114798050	-	HNE_0053	-	putative lipoprotein
54	 59.09	0	45471..45668	+	65	114798012	-	HNE_0054	-	hypothetical protein
55	 57.94	-1	45729..46049	+	106	114797061	-	HNE_0055	-	putative lipoprotein
56	 64.86	0	46142..47194	+	350	114800090	leuB	HNE_0056	-	3-isopropylmalate dehydrogenase
57	 59.61	0	47276..48466	+	396	114799080	-	HNE_0057	-	amidohydrolase family protein
58	 60.43	0	48521..48889	+	122	114800136	-	HNE_0058	-	ArsR family transcriptional regulator
59	 58.80	0	48886..49419	+	177	114799115	-	HNE_0059	-	hypothetical protein
60	 59.41	0	49416..49787	-	123	114798586	-	HNE_0060	-	hypothetical protein
61	 59.42	0	49913..50947	+	344	114797625	asd	HNE_0061	-	aspartate-semialdehyde dehydrogenase
62	 61.24	0	51015..51512	-	165	114798905	-	HNE_0062	-	YbaK/prolyl-tRNA synthetase domain-containing protein
63	 60.00	0	51575..52309	+	244	114798190	-	HNE_0063	-	hypothetical protein
64	 72.73	+2	52373..52735	-	120	114797533	hisE	HNE_0064	-	phosphoribosyl-ATP diphosphatase
65	 63.38	0	52868..53689	+	273	114798522	-	HNE_0065	-	enoyl-CoA hydratase
66	 67.98	+1	53725..54483	-	252	114797557	hisF	HNE_0066	-	imidazoleglycerol phosphate synthase, cyclase subunit
67	 68.75	+1	54635..54826	+	63	114798515	-	HNE_0067	-	hypothetical protein
68	 64.70	0	54933..55694	+	253	114799626	-	HNE_0068	-	putative diguanylate cyclase
69	 50.95	-2	55978..56187	+	69	114799723	-	HNE_0069	-	hypothetical protein
70	 67.77	+1	56214..56939	-	241	114797166	hisA	HNE_0070	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
71	 67.93	+1	56936..57568	-	210	114798251	hisH	HNE_0071	-	imidazoleglycerol phosphate synthase, glutamine amidotransferase subunit
72	 62.16	0	57668..58975	+	435	114800187	-	HNE_0072	-	putative transporter
73	 60.29	0	58991..59617	-	208	114799970	hisB	HNE_0073	-	imidazoleglycerol-phosphate dehydratase
74	 63.03	0	59697..61481	+	594	114799436	-	HNE_0074	-	putative diguanylate cyclase
75	 63.39	0	61463..61981	-	172	114798620	-	HNE_0075	-	putative acetyltransferase
76	 61.38	0	61978..62412	-	144	114800214	-	HNE_0076	-	hypothetical protein
77	 62.00	0	62417..62845	-	142	114797338	-	HNE_0077	-	hypothetical protein
78	 63.92	0	62935..63990	-	351	114798208	mclA	HNE_0078	-	malyl-CoA lyase
79	 56.22	-1	64086..64286	+	66	114797180	-	HNE_0079	-	hypothetical protein
80	 64.41	0	64291..65220	-	309	114797932	xerD	HNE_0080	-	tyrosine recombinase XerD
81	 62.03	0	65507..66067	+	186	114800012	aroK	HNE_0081	-	shikimate kinase
82	 64.17	0	66064..67185	+	373	114797725	aroB	HNE_0082	-	3-dehydroquinate synthase
83	 61.33	0	67214..68488	+	424	114798726	-	HNE_0083	-	CBS/transporter associated domain-containing protein
84	 60.99	0	68495..68776	-	93	114799844	-	HNE_0084	-	BolA family protein
85	 66.51	+1	68808..69431	+	207	114797765	-	HNE_0085	-	DnaJ domain-containing protein
86	 59.57	0	69846..70310	+	154	114798718	-	HNE_0086	-	spore coat family protein
87	 63.14	0	70322..71002	+	226	114799312	-	HNE_0087	-	hypothetical protein
88	 63.69	0	71056..73308	+	750	114800318	-	HNE_0088	-	fimbrial usher protein
89	 59.48	0	73309..73767	+	152	114797879	-	HNE_0089	-	putative lipoprotein
90	 62.32	0	73871..74860	+	329	114798702	-	HNE_0090	-	putative NADH-quinone oxidoreductase
91	 64.34	0	74864..75721	-	285	114799349	-	HNE_0091	-	putative undecaprenol kinase
92	 61.96	0	75961..77406	+	481	114800319	gltD	HNE_0092	-	putative oxidoreductase
93	 61.05	0	77412..81953	+	1513	114798288	gltB	HNE_0093	-	glutamate synthase, large subunit
94	 61.15	0	82002..82889	-	295	114798674	-	HNE_0094	-	putative lipoprotein
95	 58.33	-1	83174..84337	+	387	114799939	-	HNE_0095	-	aminotransferase, classes I and II
96	 60.85	0	84385..85932	-	515	114797697	-	HNE_0096	-	carboxyl transferase domain-containing protein
97	 58.82	0	86041..86346	+	101	114797960	-	HNE_0097	-	SCP-2 sterol transfer family protein
98	 60.17	0	86433..87386	+	317	114799139	-	HNE_0098	-	alpha/beta fold family hydrolase
99	 60.77	0	87421..88878	+	485	114797267	baiB	HNE_0099	-	bile acid-coenzyme A ligase
100	 62.09	0	88934..89938	+	334	114797977	-	HNE_0100	-	alcohol dehydrogenase, class III
62.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.