IslandPath Analysis: Streptococcus pyogenes NZ131



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.61   STD DEV: 3.77
Streptococcus pyogenes NZ131, complete genome - 1..1815785
1700 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.55	-1	232..1587	+	451	209558588	dnaA	Spy49_0001	-	Chromosomal replication initiator protein dnaA
2	 33.42	-1	1742..2878	+	378	209558589	dnaN	Spy49_0002	-	Beta subunit of DNA polymerase III
3	 32.32	-1	2953..3150	+	65	209558590	-	Spy49_0003	-	hypothetical protein
4	 37.28	0	3480..4595	+	371	209558591	-	Spy49_0004	-	GTP-binding and nucleic acid-binding protein YchF
5	 31.58	-1	4665..5234	+	189	209558592	pth	Spy49_0005	-	Peptidyl-tRNA hydrolase
6	 35.26	0	5321..8740	+	1139	209558593	trcF	Spy49_0006	-	Transcription-repair coupling factor
7	 30.77	-2	8902..9174	+	90	209558594	-	Spy49_0008	-	hypothetical protein
8	 26.61	-2	9161..9532	+	123	209558595	divIC	Spy49_0009	-	Putative cell division protein
9	 31.55	-1	9667..10953	+	428	209558596	-	Spy49_0010	-	hypothetical protein
10	 28.67	-2	10950..12236	+	428	209558597	mesJ	Spy49_0011	-	tRNA(Ile)-lysidine synthetase
11	 30.39	-2	12241..12783	+	180	209558598	hpt	Spy49_0012	-	Hypoxanthine-guanine phosphoribosyltransferase
12	 37.63	0	12805..14784	+	659	209558599	ftsH	Spy49_0013	-	Cell division protein ftsH
13	 32.65	-1	15041..16501	+	486	209558600	-	Spy49_0014	-	Putative amino acid permease
14	 39.93	0	31169..32365	+	398	209558601	-	Spy49_0015	-	Putative secreted protein Streptputative secreted protein
15	 39.36	0	32618..33580	+	320	209558602	prsA	Spy49_0016	-	Ribose-phosphate pyrophosphokinase
16	 31.08	-1	33766..34521	+	251	209558603	recO	Spy49_0017	-	DNA repair protein recO
17	 38.10	0	34624..35631	+	335	209558604	-	Spy49_0018	-	Fatty acid/phospholipid synthesis protein plsX
18	 30.45	-2	35624..35866	+	80	209558605	acp	Spy49_0019	-	Acyl carrier protein
19	 35.65	0	35987..36721	+	244	209558606	purC	Spy49_0020	-	Phosphoribosylaminoimidazole-succinocarboxamide synthase
20	 44.86	+1	36798..40571	+	1257	209558607	purL	Spy49_0021	-	Phosphoribosylformylglycinamidine synthase, synthetase subunit/Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit
21	 38.76	0	40805..42259	+	484	209558608	purF	Spy49_0022	-	Amidophosphoribosyltransferase
22	 43.01	+1	42287..43309	+	340	209558609	purM	Spy49_0023	-	Phosphoribosylformylglycinamidine cyclo-ligase
23	 46.85	+2	43477..44031	+	184	209558610	purN	Spy49_0024	-	Phosphoribosylglycinamide formyltransferase
24	 46.96	+2	44215..45762	+	515	209558611	purH	Spy49_0025	-	IMP cyclohydrolase/ Phosphoribosylaminoimidazolecarboxamide formyltransferase
25	 39.64	0	45820..46944	-	374	209558612	-	Spy49_0026c	-	Autolysin
26	 47.12	+2	47107..48462	+	451	209558613	purD	Spy49_0027	-	Phosphoribosylamine--glycine ligase
27	 48.86	+2	48621..49232	+	203	209558614	purE	Spy49_0028	-	Phosphoribosylaminoimidazole carboxylase catalytic subunit
28	 49.49	+2	49216..50292	+	358	209558615	purK	Spy49_0029	-	Phosphoribosylaminoimidazole carboxylase ATPase subunit
29	 27.33	-2	50394..51875	+	493	209558616	-	Spy49_0030	-	hypothetical protein
30	 45.17	+1	52048..53340	+	430	209558617	purB	Spy49_0031	-	Adenylosuccinate lyase
31	 29.32	-2	53471..54391	+	306	209558618	-	Spy49_0032	-	Transcriptional regulator, Cro/CI family
32	 39.74	0	54617..55615	+	332	209558619	ruvB	Spy49_0033	-	Holliday junction DNA helicase ruvB
33	 35.84	0	55753..56190	+	145	209558620	-	Spy49_0035	-	Low molecular weight protein tyrosine phosphatase
34	 35.57	0	56213..56614	+	133	209558621	-	Spy49_0036	-	hypothetical protein
35	 36.66	0	56611..58386	+	591	209558622	-	Spy49_0037	-	Putative acyltransferase
36	 40.64	0	58695..61337	+	880	209558623	adhE	Spy49_0038	-	Alcohol dehydrogenase
37	 42.38	+1	61589..62605	+	338	209558624	adhP	Spy49_0039	-	Alcohol dehydrogenase
38	 41.32	0	62993..64282	+	429	209558625	norM	Spy49_0040	-	Na+ driven multidrug efflux pump
39	 40.13	0	64481..64789	+	102	209558626	rpsJ	Spy49_0044	-	SSU ribosomal protein S10p (S20e)
40	 41.79	0	65037..65663	+	208	209558627	rplC	Spy49_0045	-	LSU ribosomal protein L3p (L3e)
41	 42.63	+1	65687..66310	+	207	209558628	rplD	Spy49_0046	-	LSU ribosomal protein L4p (L1e)
42	 37.23	0	66310..66540	+	76	209558629	rplW	Spy49_0048	-	LSU ribosomal protein L23p (L23Ae)
43	 43.53	+1	66625..67458	+	277	209558630	rplB	Spy49_0049	-	LSU ribosomal protein L2p (L8e)
44	 41.58	0	67597..67875	+	92	209558631	rpsS	Spy49_0050	-	SSU ribosomal protein S19p (S15e)
45	 39.71	0	67891..68235	+	114	209558632	rplV	Spy49_0052	-	LSU ribosomal protein L22p (L17e)
46	 41.63	0	68275..68901	+	208	209558633	rpsC	Spy49_0053	-	SSU ribosomal protein S3p (S3e)
47	 43.24	+1	68905..69318	+	137	209558634	rplP	Spy49_0054	-	LSU ribosomal protein L16p (L10e)
48	 34.78	-1	69328..69534	+	68	209558635	rpmC	Spy49_0055	-	LSU ribosomal protein L29p (L35e)
49	 38.31	0	69560..69820	+	86	209558636	rpsQ	Spy49_0056	-	SSU ribosomal protein S17p (S11e)
50	 44.17	+1	69845..70213	+	122	209558637	rplN	Spy49_0057	-	LSU ribosomal protein L14p (L23e)
51	 36.60	0	70292..70597	+	101	209558638	rplX	Spy49_0058	-	LSU ribosomal protein L24p (L26e)
52	 40.70	0	70621..71163	+	180	209558639	rplE	Spy49_0059	-	LSU ribosomal protein L5p (L11e)
53	 40.32	0	71179..71364	+	61	209558640	rpsN.1	Spy49_0060	-	SSU ribosomal protein S14p (S29e)
54	 37.09	0	71515..71913	+	132	209558641	rpsH	Spy49_0061	-	SSU ribosomal protein S8p (S15Ae)
55	 39.11	0	72116..72652	+	178	209558642	rplF	Spy49_0062	-	LSU ribosomal protein L6p (L9e)
56	 45.94	+1	72757..73113	+	118	209558643	rplR	Spy49_0064	-	LSU ribosomal protein L18p (L5e)
57	 42.83	+1	73132..73626	+	164	209558644	rpsE	Spy49_0065	-	SSU ribosomal protein S5p (S2e)
58	 37.16	0	73641..73823	+	60	209558645	rpmD	Spy49_0066	-	LSU ribosomal protein L30p (L7e)
59	 39.68	0	74038..74478	+	146	209558646	rplO	Spy49_0067	-	LSU ribosomal protein L15p (L27Ae)
60	 36.63	0	74495..75799	+	434	209558647	secY	Spy49_0068	-	Preprotein translocase secY subunit
61	 39.44	0	75949..76587	+	212	209558648	adk	Spy49_0069	-	Adenylate kinase
62	 36.99	0	76705..76923	+	72	209558649	infA	Spy49_0070	-	Translation initiation factor 1
63	 37.61	0	76949..77065	+	38	209558650	rpmJ	Spy49_0071	-	LSU ribosomal protein L36p
64	 39.34	0	77083..77448	+	121	209558651	rpsM	Spy49_0072	-	SSU ribosomal protein S13p (S18e)
65	 43.75	+1	77466..77849	+	127	209558652	rpsK	Spy49_0073	-	SSU ribosomal protein S11p (S14e)
66	 38.23	0	77895..78833	+	312	209558653	rpoA	Spy49_0074	-	DNA-directed RNA polymerase alpha subunit
67	 40.83	0	78848..79234	+	128	209558654	rplQ	Spy49_0075	-	LSU ribosomal protein L17p
68	 43.78	+1	87367..87615	+	82	209558655	-	Spy49_0078	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
69	 38.03	0	87670..87882	+	70	209558656	-	Spy49_0079	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
70	 33.78	-1	87992..88435	+	147	209558657	adrR	Spy49_0080	-	Putative repressor protein
71	 40.97	0	88439..89158	+	239	209558658	adrC	Spy49_0081	-	ABC transporter
72	 38.60	0	89151..89966	+	271	209558659	adrB	Spy49_0082	-	Putative ABC transporter
73	 40.89	0	90006..90389	-	127	209558660	-	Spy49_0083c	-	Putative histidine triad (HIT) protein
74	 41.37	0	90440..91696	-	418	209558661	tyrS	Spy49_0084	-	Tyrosyl-tRNA synthetase
75	 40.42	0	91800..94100	+	766	209558662	pbp1b	Spy49_0086	-	Multimodular transpeptidase-transglycosylase
76	 43.31	+1	94364..97930	+	1188	209558663	rpoB	Spy49_0087	-	DNA-directed RNA polymerase beta subunit
77	 43.98	+1	98048..101662	+	1204	209558664	rpoC	Spy49_0088	-	DNA-directed RNA polymerase beta subunit
78	 34.70	-1	101814..102179	+	121	209558665	-	Spy49_0089	-	Putative DNA binding protein
79	 37.70	0	102272..103210	+	312	209558666	comYA	Spy49_0090	-	Putative ABC transporter subunit ComYA
80	 35.50	0	103305..104180	+	291	209558667	comYB	Spy49_0091	-	Putative competence protein, ABC transporter subunit
81	 33.94	-1	104182..104508	+	108	209558668	comYC	Spy49_0092	-	Putative competence protein
82	 34.27	-1	104483..104911	+	142	209558669	-	Spy49_0093	-	Competence protein
83	 37.19	0	104868..105152	+	94	209558670	-	Spy49_0094	-	hypothetical protein
84	 34.94	0	105145..105579	+	144	209558671	comYD	Spy49_0095	-	Putative competence protein
85	 34.36	-1	105599..105889	+	96	209558672	-	Spy49_0096	-	hypothetical protein
86	 38.47	0	105987..106940	+	317	209558673	-	Spy49_0097	-	Adenine-specific methyltransferase
87	 38.76	0	106999..108195	+	398	209558674	ackA	Spy49_0098	-	Acetate kinase
88	 34.57	-1	108381..108623	+	80	209558675	-	Spy49_0099	-	hypothetical protein
89	 43.71	+1	108772..109542	-	256	209558676	proC	Spy49_0100	-	Pyrroline-5-carboxylate reductase
90	 45.69	+1	109590..110657	-	355	209558677	pepA	Spy49_0101	-	Putative glutamyl-aminopeptidase
91	 37.07	0	112439..112732	+	97	209558678	-	Spy49_0103	-	hypothetical protein
92	 34.91	0	112729..113046	+	105	209558679	trx.1	Spy49_0104	-	Putative thioredoxin
93	 42.79	+1	113064..113708	+	214	209558680	-	Spy49_0105	-	tRNA binding domain protein
94	 38.38	0	113842..114237	+	131	209558681	ssb	Spy49_0107	-	Single-stranded DNA-binding protein
95	 39.56	0	114497..115138	-	213	209558682	-	Spy49_0108c	-	Deoxyadenosine kinase/Deoxyguanosine kinase
96	 46.11	+1	115158..116135	-	325	209558683	-	Spy49_0109c	-	putative transcriptional regulator
97	 41.47	0	116122..116994	-	290	209558684	-	Spy49_0110c	-	33 kDa chaperonin
98	 31.77	-1	117120..118655	-	511	209558685	nra	Spy49_0111	-	Regulatory protein
99	 35.30	0	119085..121319	+	744	209558686	cbp	Spy49_0112	-	Putative collagen binding protein
100	 36.97	0	121312..121833	+	173	209558687	lepA-1	Spy49_0113	-	Putative signal peptidase I
38.61	MEAN

3.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.