IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.17   STD DEV: 3.87
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome II, complete sequence - 1..277655
276 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.97	0	103..855	+	250	189913174	-	LEPBI_II0001	-	Putative ATPase, ParA family
2	 42.09	0	839..1660	+	273	189913175	-	LEPBI_II0002	-	Putative chromosome partitioning protein ParB
3	 46.54	+1	2002..2925	+	307	189913176	-	LEPBI_II0003	-	hypothetical protein
4	 42.40	0	2949..5486	+	845	189913177	-	LEPBI_II0004	-	hypothetical protein
5	 38.41	0	5472..6299	-	275	189913178	-	LEPBI_II0005	-	hypothetical protein
6	 31.96	-1	6296..7459	-	387	189913179	-	LEPBI_II0006	-	Hypothetical protein; putative membrane protein
7	 36.66	0	7488..8360	+	290	189913180	-	LEPBI_II0007	-	hypothetical protein
8	 35.87	0	8344..10668	-	774	189913181	-	LEPBI_II0008	-	Histidine kinase sensor protein
9	 36.12	0	10726..12558	-	610	189913182	htpG	LEPBI_II0009	-	Heat shock protein HtpG
10	 33.21	-1	12562..14133	-	523	189913183	batD	LEPBI_II0010	-	Hypothetical BatD protein; putative von Willebrand factor, type A domain containing protein
11	 34.79	-1	14117..15760	-	547	189913184	batB	LEPBI_II0011	-	Hypothetical BatB protein; putative von Willebrand factor, type A domain containing protein
12	 36.90	0	15760..16713	-	317	189913185	batA	LEPBI_II0012	-	Hypothetical BatA protein; putative von Willebrand factor, type A domain containing protein
13	 32.16	-1	16715..17482	-	255	189913186	-	LEPBI_II0013	-	hypothetical protein
14	 33.09	-1	17547..18365	-	272	189913187	-	LEPBI_II0014	-	hypothetical protein
15	 36.49	0	18367..19347	-	326	189913188	-	LEPBI_II0015	-	Putative methanol dehydrogenase regulator (MoxR)
16	 36.52	0	19338..20657	-	439	189913189	-	LEPBI_II0016	-	Conserved hypothetical protein; putative signal peptide
17	 37.20	0	20654..21196	-	180	189913190	-	LEPBI_II0017	-	hypothetical protein
18	 38.43	0	21196..22059	-	287	189913191	-	LEPBI_II0018	-	Putative hydrolase
19	 34.27	-1	22146..22574	+	142	189913192	-	LEPBI_II0019	-	Hypothetical protein; putative signal peptide
20	 36.40	0	22571..22831	+	86	189913193	-	LEPBI_II0020	-	Hypothetical protein; putative signal peptide
21	 36.64	0	22817..24088	-	423	189913194	ndh	LEPBI_II0021	-	NADH dehydrogenase
22	 33.33	-1	24091..24564	-	157	189913195	-	LEPBI_II0022	-	Putative phosphotyrosine protein phosphatase
23	 27.67	-2	24565..25164	-	199	189913196	-	LEPBI_II0023	-	hypothetical protein
24	 35.46	0	25226..26305	-	359	189913197	-	LEPBI_II0024	-	hypothetical protein
25	 34.95	-1	26495..27421	+	308	189913198	-	LEPBI_II0025	-	Putative ATPase, ParA family
26	 35.72	0	27405..28115	+	236	189913199	-	LEPBI_II0026	-	Putative chromosome partitioning protein ParB
27	 34.56	-1	28123..28773	+	216	189913200	-	LEPBI_II0027	-	hypothetical protein
28	 33.17	-1	28770..29372	+	200	189913201	-	LEPBI_II0028	-	Putative reductase
29	 29.90	-2	29323..30399	-	358	189913202	-	LEPBI_II0029	-	Hypothetical protein; putative transmembrane protein
30	 35.71	0	30504..30923	+	139	189913203	-	LEPBI_II0030	-	Putative cyclic nucleotide binding protein
31	 32.14	-1	30934..31185	-	83	189913204	-	LEPBI_II0031	-	hypothetical protein
32	 36.40	0	31188..32591	-	467	189913205	-	LEPBI_II0032	-	hypothetical protein
33	 36.55	0	32778..33305	+	175	189913206	-	LEPBI_II0033	-	hypothetical protein
34	 34.94	-1	33202..33762	-	186	189913207	-	LEPBI_II0034	-	hypothetical protein
35	 39.28	0	33763..35040	-	425	189913208	-	LEPBI_II0035	-	hypothetical protein
36	 39.22	0	35218..35523	+	101	189913209	-	LEPBI_II0036	-	Putative DNA-binding protein (HU-like protein)
37	 33.77	-1	35565..36017	+	150	189913210	-	LEPBI_II0037	-	hypothetical protein
38	 38.30	0	36088..37719	+	543	189913211	eapA	LEPBI_II0038	-	Putative alkyldihydroxyacetonephosphate synthase
39	 37.69	0	37719..38360	+	213	189913212	-	LEPBI_II0039	-	hypothetical protein
40	 38.06	0	38357..39286	+	309	189913213	-	LEPBI_II0040	-	hypothetical protein
41	 38.76	0	39291..40931	+	546	189913214	glpD	LEPBI_II0041	-	Glycerol-3-phosphate oxidase
42	 37.12	0	40932..41354	+	140	189913215	-	LEPBI_II0042	-	hypothetical protein
43	 39.74	0	41380..42378	-	332	189913216	argK	LEPBI_II0043	-	Putative periplasmic kinase
44	 43.29	+1	42480..44498	-	672	189913217	mcm2	LEPBI_II0044	-	Methylmalonyl-CoA mutase
45	 37.24	0	44600..45931	+	443	189913218	-	LEPBI_II0045	-	hypothetical protein
46	 44.18	+1	45951..46586	-	211	189913219	-	LEPBI_II0046	-	Putative soluble lytic murein transglycosylase; putative SLT domain
47	 39.79	0	46641..47027	-	128	189913220	-	LEPBI_II0047	-	Putative response regulator
48	 42.86	0	47098..48504	-	468	189913221	aspA	LEPBI_II0048	-	Aspartate ammonia-lyase (aspartase)
49	 36.77	0	48546..48923	+	125	189913222	-	LEPBI_II0049	-	Hypothetical protein; putative signal peptide
50	 37.89	0	48961..49641	+	226	189913223	-	LEPBI_II0050	-	hypothetical protein
51	 39.50	0	49676..50113	+	145	189913224	-	LEPBI_II0051	-	hypothetical protein
52	 40.18	0	50212..50664	+	150	189913225	-	LEPBI_II0052	-	Conserved hypothetical protein; putative signal peptide
53	 36.38	0	50668..51192	+	174	189913226	-	LEPBI_II0053	-	Putative RNA polymerase ECF-type sigma factor
54	 37.28	0	51209..51436	+	75	189913227	-	LEPBI_II0054	-	hypothetical protein
55	 38.30	0	51527..51868	+	113	189913228	-	LEPBI_II0055	-	hypothetical protein
56	 40.85	0	51886..52524	-	212	189913229	-	LEPBI_II0056	-	Hypothetical protein; putative membrane protein
57	 39.15	0	52553..52741	-	62	189913230	-	LEPBI_II0057	-	hypothetical protein
58	 39.95	0	52750..55212	-	820	189913231	-	LEPBI_II0058	-	Putative P-type ATPase, copper transporting ATPase, a phophatase-like domain
59	 37.01	0	55209..55697	-	162	189913232	-	LEPBI_II0059	-	Hypothetical protein; putative signal peptide
60	 40.45	0	55699..57018	-	439	189913233	-	LEPBI_II0060	-	Putative iron-sulfur cluster-binding protein; putative transmembrane protein
61	 44.07	+1	57021..57551	-	176	189913234	-	LEPBI_II0061	-	Putative cytochrome c oxidase, subunit III
62	 38.67	0	57557..57706	-	49	189913235	-	LEPBI_II0062	-	hypothetical protein
63	 43.10	+1	57711..58406	-	231	189913236	-	LEPBI_II0063	-	Putative cytochrome oxidase subunit II
64	 41.72	0	58406..59836	-	476	189913237	-	LEPBI_II0064	-	Putative cytochrome c oxidase, subunit I (Heme B/copper cytochrome c oxidase subunit); putative membrane protein
65	 40.97	0	60025..60993	-	322	189913238	-	LEPBI_II0065	-	Conserved hypothetical protein; putative signal peptide
66	 45.81	+1	61207..62649	-	480	189913239	gltD	LEPBI_II0066	-	Glutamate synthase (NADPH)
67	 45.06	+1	62642..67219	-	1525	189913240	gltB	LEPBI_II0067	-	Glutamate synthase large chain precursor
68	 39.77	0	67413..68624	-	403	189913241	-	LEPBI_II0068	-	Hypothetical protein; putative membrane protein
69	 40.78	0	68669..69622	+	317	189913242	-	LEPBI_II0069	-	hypothetical protein
70	 30.00	-2	69940..70239	+	99	189913243	-	LEPBI_II0070	-	hypothetical protein
71	 33.09	-1	70240..70644	+	134	189913244	-	LEPBI_II0071	-	Putative DNA-binding protein
72	 39.93	0	70798..71343	-	181	189913245	aroK	LEPBI_II0072	-	Shikimate kinase
73	 40.00	0	71365..72219	-	284	189913246	-	LEPBI_II0073	-	hypothetical protein
74	 39.48	0	72225..72728	-	167	189913247	cheD	LEPBI_II0074	-	Chemotaxis protein CheD
75	 39.71	0	72789..74012	+	407	189913248	traB	LEPBI_II0075	-	Pheromone shutdown protein, TraB family
76	 43.39	+1	74060..74437	+	125	189913249	-	LEPBI_II0076	-	Hypothetical protein; putative signal peptide
77	 43.24	+1	74513..74956	+	147	189913250	-	LEPBI_II0077	-	Conserved hypothetical protein; putative signal peptide
78	 37.25	0	75012..75905	-	297	189913251	-	LEPBI_II0078	-	hypothetical protein
79	 44.54	+1	76018..76383	+	121	189913252	-	LEPBI_II0079	-	Hypothetical protein; putative signal peptide
80	 38.57	0	76385..77797	+	470	189913253	galU1	LEPBI_II0080	-	UTP--glucose-1-phosphate uridylyltransferase
81	 39.77	0	77794..78057	+	87	189913254	-	LEPBI_II0081	-	Hypothetical protein; putative signal peptide
82	 40.01	0	78134..80545	-	803	189913255	-	LEPBI_II0082	-	Hypothetical proteinase; putative signal peptide
83	 43.15	+1	80547..81188	-	213	189913256	-	LEPBI_II0083	-	Putative TonB-dependent outer membrane receptor; putative signal peptide
84	 41.63	0	81200..81946	-	248	189913257	-	LEPBI_II0084	-	Putative MotA/TolQ/ExbB proton channel protein
85	 37.43	0	81965..83845	+	626	189913258	-	LEPBI_II0085	-	hypothetical protein
86	 43.95	+1	83858..87061	+	1067	189913259	-	LEPBI_II0087	-	Putative acriflavine resistance protein D; putative transmembrane protein
87	 43.25	+1	87143..87505	+	120	189913260	-	LEPBI_II0088	-	hypothetical protein
88	 35.74	0	87554..88798	+	414	189913261	-	LEPBI_II0089	-	Hypothetical protein; putative membrane protein
89	 40.18	0	88795..89451	+	218	189913262	-	LEPBI_II0090	-	Putative response regulatory protein
90	 34.88	-1	89528..89656	+	42	189913263	-	LEPBI_II0091	-	hypothetical protein
91	 45.88	+1	89778..90893	-	371	189913264	-	LEPBI_II0092	-	Putative transport system kinase; putative ArgK protein
92	 47.03	+2	91031..93169	-	712	189913265	mutB	LEPBI_II0094	-	Methylmalonyl-COA mutase large subunit
93	 44.43	+1	93162..94982	-	606	189913266	mutA	LEPBI_II0095	-	Methylmalonyl-COA mutase small subunit
94	 45.35	+1	94984..95316	-	110	189913267	-	LEPBI_II0096	-	hypothetical protein
95	 39.91	0	95359..96027	+	222	189913268	-	LEPBI_II0097	-	Hypothetical protein; putative membrane protein
96	 37.91	0	96086..96850	+	254	189913269	-	LEPBI_II0098	-	hypothetical protein
97	 40.99	0	96850..97332	+	160	189913270	-	LEPBI_II0099	-	hypothetical protein
98	 44.69	+1	97322..98263	+	313	189913271	-	LEPBI_II0100	-	Hypothetical protein; putative membrane protein
99	 41.61	0	98310..99155	-	281	189913272	-	LEPBI_II0101	-	hypothetical protein
100	 40.68	0	99155..99508	-	117	189913273	-	LEPBI_II0102	-	hypothetical protein
39.17	MEAN

3.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.