IslandPath Analysis: Clostridium botulinum F str. Langeland



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.87   STD DEV: 4.01
Clostridium botulinum F str. Langeland, complete genome - 1..3995387
3635 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 27.95	0	1..1338	+	445	153940298	dnaA	CLI_0001	-	chromosomal replication initiation protein
2	 25.45	0	1601..2704	+	367	153939951	dnaN	CLI_0002	-	DNA polymerase III subunit beta
3	 24.15	-1	2723..2929	+	68	153938642	-	CLI_0003	-	S4 domain-containing protein
4	 22.92	-1	3008..4102	+	364	153940655	recF	CLI_0004	-	recombination protein F
5	 28.41	0	4123..4386	+	87	153939945	-	CLI_0005	-	hypothetical protein
6	 31.66	0	4404..6317	+	637	153939432	gyrB	CLI_0006	-	DNA gyrase subunit B
7	 30.21	0	6343..8838	+	831	153938259	gyrA	CLI_0007	-	DNA gyrase subunit A
8	 23.08	-1	8935..9051	+	38	153938624	-	CLI_0008	-	hypothetical protein
9	 18.91	-2	14382..14804	+	140	153938793	-	CLI_0019	-	hypothetical protein
10	 25.48	0	14820..15341	+	173	153938011	-	CLI_0020	-	putative transcriptional regulator
11	 29.30	0	15343..16506	+	387	153940224	-	CLI_0021	-	iron-sulfur cluster-binding protein
12	 22.74	-1	16511..19192	+	893	153941427	-	CLI_0022	-	hypothetical protein
13	 21.75	-1	19329..20105	+	258	153938168	-	CLI_0023	-	ErfK/YbiS/YcfS/YnhG family protein
14	 24.75	-1	20130..21527	+	465	153939164	-	CLI_0024	-	oxidoreductase, FAD dependent
15	 23.16	-1	21544..21897	+	117	153938251	-	CLI_0025	-	hypothetical protein
16	 28.96	0	22267..23547	+	426	153939104	serS-1	CLI_0026	-	seryl-tRNA synthetase
17	 27.97	0	24306..25442	+	378	153939868	-	CLI_0031	-	hypothetical protein
18	 24.10	-1	25956..26843	-	295	153938292	psd	CLI_0038	-	phosphatidylserine decarboxylase
19	 23.89	-1	26946..28544	-	532	153940296	-	CLI_0039	-	hypothetical protein
20	 23.05	-1	28620..28940	-	106	153941134	-	CLI_0040	-	hypothetical protein
21	 24.18	-1	29334..30884	+	516	153938244	-	CLI_0042	-	putative sensory box sigma-54 dependent transcriptional regulator
22	 33.67	+1	31044..32246	+	400	153939022	megL	CLI_0043	-	methionine gamma-lyase
23	 27.17	0	32370..32807	+	145	153941479	-	CLI_0044	-	cytidine/deoxycytidylate deaminase family protein
24	 27.98	0	33452..35077	+	541	153941061	dnaX	CLI_0047	-	DNA polymerase III subunits gamma and tau
25	 35.96	+1	35142..35483	+	113	153941296	-	CLI_0048	-	hypothetical protein
26	 30.32	0	35516..36112	+	198	153938661	recR	CLI_0049	-	recombination protein RecR
27	 26.14	0	36169..36432	+	87	153939706	-	CLI_0050	-	hypothetical protein
28	 23.37	-1	36582..36842	+	86	153938785	bofA	CLI_0051	-	sigma-K factor processing regulatory protein BofA
29	 27.42	0	36993..37685	+	230	153938208	sfsA	CLI_0052	-	sugar fermentation stimulation protein A
30	 28.63	0	37741..38229	+	162	153940223	-	CLI_0053	-	NUDIX family hydrolase
31	 33.47	+1	38347..39069	+	240	153939792	-	CLI_0054	-	hypothetical protein
32	 25.60	0	39203..39991	+	262	153939241	-	CLI_0055	-	iron-sulfur cluster-binding protein
33	 20.37	-2	40010..40171	+	53	153938127	-	CLI_0056	-	hypothetical protein
34	 29.08	0	40554..41258	+	234	153941392	-	CLI_0057	-	ThiF domain-containing protein
35	 24.59	-1	41341..42450	+	369	153940471	-	CLI_0058	-	major facilitator superfamily protein
36	 21.16	-1	42479..43423	+	314	153939436	-	CLI_0059	-	acetyltransferase
37	 27.64	0	48889..49485	-	198	153939172	-	CLI_0067	-	uracil-DNA glycosylase family protein
38	 25.35	0	55481..56044	+	187	153940163	-	CLI_0075	-	RNA polymerase factor sigma-70
39	 27.10	0	56041..57483	+	480	153939523	-	CLI_0076	-	hypothetical protein
40	 20.97	-1	63218..63403	+	61	153939049	-	CLI_0085	-	hypothetical protein
41	 19.54	-2	63658..63831	+	57	153940613	-	CLI_0086	-	hypothetical protein
42	 27.96	0	70083..70826	+	247	153940453	-	CLI_0097	-	peptidil-prolyl isomerase family protein
43	 26.88	0	76430..77173	+	247	153941446	-	CLI_0103	-	NAD-dependent deacetylase
44	 28.16	0	77359..78267	-	302	153941083	-	CLI_0105	-	LD-carboxypeptidase family protein
45	 25.69	0	78303..79244	-	313	153938426	-	CLI_0106	-	CorA family protein
46	 20.83	-2	79609..80112	+	167	153940892	-	CLI_0107	-	hypothetical protein
47	 27.13	0	80117..81277	-	386	153938694	-	CLI_0108	-	amidohydrolase-like protein
48	 25.35	0	81532..81744	+	70	153939487	-	CLI_0109	-	csfB protein,-like protein
49	 25.81	0	81723..83171	+	482	153940352	-	CLI_0110	-	Orn/Lys/Arg decarboxylase
50	 27.73	0	83195..83890	+	231	153940357	-	CLI_0111	-	putative thymidylate kinase
51	 32.42	0	83971..84300	+	109	153941143	-	CLI_0112	-	hypothetical protein
52	 22.65	-1	84318..85262	+	314	153939243	-	CLI_0113	-	DNA polymerase III subunit delta'
53	 29.73	0	85264..86178	+	304	153939884	-	CLI_0114	-	PSP1 domain-containing protein
54	 29.41	0	86190..86393	+	67	153938720	-	CLI_0115	-	hypothetical protein
55	 40.35	+2	86475..86645	+	56	153941409	-	CLI_0116	-	ferredoxin, 4Fe-4S
56	 27.80	0	86766..87506	+	246	153938423	-	CLI_0117	-	hypothetical protein
57	 25.61	0	87526..88380	+	284	153939457	-	CLI_0118	-	tetrapyrrole methylase family protein
58	 34.06	+1	88536..89639	+	367	153939454	-	CLI_0119	-	NlpC/P60 family protein
59	 28.86	0	89739..89984	-	81	153940970	-	CLI_0120	-	AbrB family transcriptional regulator
60	 22.88	-1	90790..91401	+	203	153938237	-	CLI_0121	-	hypothetical protein
61	 29.46	0	91823..93034	+	403	153938825	arcA-1	CLI_0122	-	arginine deiminase
62	 29.06	0	93120..93587	-	155	153939019	ispF	CLI_0123	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
63	 18.32	-2	93663..93995	-	110	153938675	-	CLI_0124	-	hypothetical protein
64	 25.98	0	94323..95192	+	289	153939830	-	CLI_0125	-	polysaccharide deacetylase family protein
65	 21.40	-1	95461..95703	-	80	153941482	-	CLI_0126	-	hypothetical protein
66	 30.03	0	95823..96398	+	191	153940549	spmA	CLI_0127	-	spore maturation protein A
67	 30.64	0	96411..96929	+	172	153938418	-	CLI_0128	-	spore maturation protein B
68	 28.18	0	97174..98511	-	445	153940161	-	CLI_0129	-	MATE efflux family protein
69	 31.24	0	98655..99227	+	190	153940469	udgA	CLI_0130	-	uracil-DNA glycosylase
70	 20.00	-2	99256..99690	+	144	153941273	-	CLI_0131	-	MarR family transcriptional regulator
71	 30.29	0	100072..102009	+	645	153938113	metG	CLI_0132	-	methionyl-tRNA synthetase
72	 22.84	-1	102304..103809	+	501	153939628	-	CLI_0133	-	hypothetical protein
73	 27.92	0	103960..104754	+	264	153940001	-	CLI_0134	-	TatD family hydrolase
74	 32.48	0	104982..106040	+	352	153940925	-	CLI_0135	-	3D/G5 domain-containing protein
75	 32.05	0	106113..106658	+	181	153940057	-	CLI_0136	-	primase-related protein
76	 28.02	0	106660..107487	+	275	153940692	ksgA	CLI_0137	-	dimethyladenosine transferase
77	 26.26	0	107566..108795	+	409	153939474	-	CLI_0138	-	hypothetical protein
78	 22.11	-1	108952..109539	+	195	153940486	-	CLI_0139	-	hypothetical protein
79	 23.14	-1	109704..110537	+	277	153940277	-	CLI_0140	-	putative lipoprotein
80	 28.91	0	110705..111766	+	353	153941283	-	CLI_0141	-	RND family marcrolide efflux protein
81	 29.74	0	111777..112472	+	231	153937987	-	CLI_0142	-	putative macrolide efflux ABC transporter, ATP-binding protein
82	 29.61	0	112469..113677	+	402	153939259	-	CLI_0143	-	putative macrolide efflux ABC transporter, permease protein
83	 32.15	0	113759..114601	+	280	153938568	-	CLI_0144	-	MRP protein-like protein
84	 31.77	0	114738..114929	+	63	153938031	-	CLI_0145	-	iron-sulfur cluster-binding protein
85	 24.86	0	115375..115551	-	58	153940364	-	CLI_0146	-	hypothetical protein
86	 19.42	-2	115629..116699	+	356	153937910	-	CLI_0147	-	putative diguanylate cyclase
87	 24.42	-1	116756..117484	+	242	153940906	-	CLI_0148	-	mgtC family protein
88	 29.69	0	117774..119915	+	713	153938050	nrdD	CLI_0149	-	anaerobic ribonucleoside triphosphate reductase
89	 24.57	-1	119932..120456	+	174	153938755	nrdG	CLI_0150	-	anaerobic ribonucleoside-triphosphate reductase activating protein
90	 19.41	-2	120982..121656	-	224	153939645	-	CLI_0151	-	hypothetical protein
91	 26.55	0	121658..121996	-	112	153940392	-	CLI_0152	-	PadR family transcriptional regulator
92	 25.51	0	122117..122755	-	212	153941177	-	CLI_0153	-	putative zinc-dependent hydrolase
93	 30.41	0	123197..126313	+	1038	153938315	ileS	CLI_0154	-	isoleucyl-tRNA synthetase
94	 27.63	0	126464..127462	+	332	153939069	-	CLI_0155	-	LacI family transcription regulator
95	 23.98	-1	127678..131730	+	1350	153938250	-	CLI_0156	-	hypothetical protein
96	 27.81	0	131805..132872	+	355	153939486	-	CLI_0157	-	putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
97	 28.86	0	133208..134503	+	431	153938796	-	CLI_0158	-	hypothetical protein
98	 28.13	0	134508..135314	+	268	153940729	-	CLI_0159	-	hypothetical protein
99	 32.80	0	135334..136080	+	248	153939928	-	CLI_0160	-	hypothetical protein
100	 30.30	0	136305..137687	+	460	153939205	-	CLI_0161	-	radical SAM domain-containing protein
28.87	MEAN

4.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.