IslandPath Analysis: Salmonella enterica subsp. enterica serovar Newport str. SL254



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.87   STD DEV: 6.14
Salmonella enterica subsp. enterica serovar Newport str. SL254, complete genome - 1..4827641
4612 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.11	0	337..2799	+	820	194446390	thrA	SNSL254_A0002	-	aspartokinase/homoserine dehydrogenase I
2	 57.74	0	2801..3730	+	309	194444692	thrB	SNSL254_A0003	-	homoserine kinase
3	 56.33	0	3734..5020	+	428	194444103	thrC	SNSL254_A0004	-	threonine synthase
4	 50.52	0	5114..5887	-	257	194443561	-	SNSL254_A0005	-	protein YaaA
5	 55.77	0	5966..7396	-	476	194442782	-	SNSL254_A0006	-	amino-acid carrier protein AlsT
6	 54.09	0	7665..8618	+	317	194442295	tal2	SNSL254_A0007	-	transaldolase
7	 56.01	0	8729..9319	+	196	194446748	mog	SNSL254_A0008	-	molybdopterin biosynthesis protein Mog
8	 54.32	0	9376..9942	-	188	194446224	-	SNSL254_A0009	-	membrane protein, GPR1/FUN34/yaaH family
9	 54.34	0	10092..10805	-	237	194445369	-	SNSL254_A0010	-	positive regulator for sigma H
10	 49.63	0	10841..11245	-	134	194444858	-	SNSL254_A0011	-	protein YaaI
11	 30.95	-2	11300..11425	+	41	194445604	-	SNSL254_A0012	-	hypothetical protein
12	 52.53	0	11594..13510	+	638	194444220	dnaK	SNSL254_A0013	-	chaperone protein DnaK
13	 54.04	0	13596..14735	+	379	194443702	dnaJ	SNSL254_A0014	-	chaperone protein DnaJ
14	 28.95	-2	14851..14964	+	37	194446057	-	SNSL254_A0015	-	hypothetical protein
15	 41.24	-1	15020..15967	+	315	194445243	-	SNSL254_A0016	-	putative transcriptional regulator
16	 39.93	-1	16136..16438	+	100	194442240	-	SNSL254_A0017	-	putative bacteriophage protein
17	 51.15	0	16499..17020	-	173	194446320	-	SNSL254_A0018	-	hypothetical protein
18	 38.51	-2	17037..17480	-	147	194443995	-	SNSL254_A0019	-	hypothetical protein
19	 51.10	0	17861..19960	+	699	194443256	-	SNSL254_A0020	-	exochitinase
20	 54.72	0	20052..23048	+	998	194445060	-	SNSL254_A0021	-	putative hydroxymethyltransferase
21	 46.95	0	23329..24033	+	234	194444266	-	SNSL254_A0022	-	putative cytoplasmic protein
22	 51.93	0	24462..25004	+	180	194443119	-	SNSL254_A0023	-	fimbrial subunit
23	 50.80	0	25105..25791	+	228	194443678	-	SNSL254_A0024	-	chaperone protein FimC
24	 54.52	0	25751..28417	+	888	194446095	-	SNSL254_A0025	-	outer membrane usher protein FimD
25	 50.30	0	28418..29425	+	335	194446333	-	SNSL254_A0026	-	mannose binding protein FimH
26	 49.70	0	29465..29971	+	168	194444519	-	SNSL254_A0027	-	fimbrial subunit
27	 55.68	0	29987..30505	+	172	194445269	-	SNSL254_A0028	-	fimbrial subunit
28	 53.96	0	30471..31202	+	243	194444078	-	SNSL254_A0029	-	fimbrial chaperone
29	 55.08	0	31267..32112	+	281	194444351	-	SNSL254_A0030	-	BcfH
30	 41.32	-1	32151..32438	+	95	194442512	-	SNSL254_A0031	-	hypothetical protein
31	 37.33	-2	32538..32987	-	149	194443097	-	SNSL254_A0032	-	hypothetical protein
32	 38.51	-2	33357..34361	+	334	194446304	-	SNSL254_A0033	-	putative transcriptional regulator
33	 22.50	-2	34950..35069	-	39	194445680	-	SNSL254_A0035	-	hypothetical protein
34	 46.48	0	35332..37050	+	572	194446355	-	SNSL254_A0036	-	arylsulfotransferase
35	 47.02	0	37096..38658	-	520	194444661	-	SNSL254_A0037	-	5'-Nucleotidase domain protein
36	 44.49	-1	38766..39527	-	253	194445358	-	SNSL254_A0038	-	putative outer membrane/exported protein
37	 51.94	0	40122..41615	+	497	194443287	-	SNSL254_A0039	-	sulfatase
38	 49.66	0	41717..42904	+	395	194443637	-	SNSL254_A0040	-	chondroitin sulfate/heparin utilization regulation protein
39	 50.00	0	42929..44176	+	415	194445725	-	SNSL254_A0041	-	putative cytoplasmic protein
40	 49.88	0	44303..46018	+	571	194446358	-	SNSL254_A0042	-	arylsulfotransferase
41	 56.56	0	46181..47347	+	388	194446207	nhaA	SNSL254_A0043	-	Na+/H+ antiporter NhaA
42	 50.45	0	47415..48308	+	297	194443115	-	SNSL254_A0044	-	transcriptional activator protein NhaR
43	 54.51	0	48363..50402	-	679	194443677	-	SNSL254_A0045	-	glycoside hydrolase, family 31
44	 49.01	0	50442..51857	-	471	194445592	-	SNSL254_A0046	-	xylose-proton symporter
45	 46.59	0	52271..52534	-	87	194444108	rpsT	SNSL254_A0047	-	ribosomal protein S20
46	 44.90	-1	52709..52855	+	48	194444305	-	SNSL254_A0048	-	hypothetical protein
47	 56.76	0	52863..53801	+	312	194442807	ribF	SNSL254_A0049	-	riboflavin biosynthesis protein RibF
48	 54.68	0	53810..56680	+	956	194442276	ileS	SNSL254_A0050	-	isoleucyl-tRNA synthetase
49	 52.89	0	56680..57180	+	166	194446803	lspA	SNSL254_A0051	-	signal peptidase II
50	 54.44	0	57335..57784	+	149	194446160	fkpB	SNSL254_A0052	-	FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase
51	 57.20	0	57787..58737	+	316	194443769	ispH	SNSL254_A0053	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
52	 44.65	-1	58849..59007	-	52	194444262	-	SNSL254_A0055	-	hypothetical protein
53	 48.44	0	58988..60139	+	383	194445334	-	SNSL254_A0054	-	putative nitrite reductase
54	 56.46	0	60155..61075	+	306	194445788	-	SNSL254_A0056	-	Non-specific ribonucleoside hydrolase RihC
55	 48.03	0	61097..61783	-	228	194446327	-	SNSL254_A0057	-	transcriptional regulatory protein CitB
56	 47.38	0	61785..63443	-	552	194442739	-	SNSL254_A0058	-	sensor kinase DpiB
57	 64.13	+1	63539..64840	-	433	194443227	-	SNSL254_A0059	-	oxaloacetate decarboxylase beta chain
58	 63.01	+1	64853..66628	-	591	194443760	oadA	SNSL254_A0060	-	oxaloacetate decarboxylase alpha subunit
59	 57.08	0	66644..66883	-	79	194444764	-	SNSL254_A0061	-	hypothetical protein
60	 49.29	0	67042..68382	-	446	194445261	-	SNSL254_A0062	-	citrate-sodium symporter
61	 53.97	0	68639..69670	+	343	194444878	citC	SNSL254_A0063	-	[citrate (pro-3S)-lyase] ligase
62	 57.14	0	69700..69993	+	97	194446729	citD	SNSL254_A0064	-	citrate lyase acyl carrier protein
63	 55.40	0	69990..70859	+	289	194446194	citE	SNSL254_A0065	-	citrate (pro-3S)-lyase, beta subunit
64	 54.96	0	70870..72390	+	506	194442210	citF	SNSL254_A0066	-	citrate lyase, alpha subunit
65	 55.98	0	72390..72941	+	183	194444126	citX	SNSL254_A0067	-	holo-ACP synthase CitX
66	 54.57	0	72919..73827	+	302	194443498	citG	SNSL254_A0068	-	triphosphoribosyl-dephospho-CoA synthase CitG
67	 56.81	0	74007..74828	+	273	194445308	dapB	SNSL254_A0069	-	dihydrodipicolinate reductase
68	 55.44	0	75690..76838	+	382	194444919	carA	SNSL254_A0070	-	carbamoyl-phosphate synthase, small subunit
69	 58.64	+1	76857..80084	+	1075	194446768	carB	SNSL254_A0071	-	carbamoyl-phosphate synthase, large subunit
70	 55.95	0	80831..81427	-	198	194445217	-	SNSL254_A0073	-	carnitine operon protein CaiE
71	 56.87	0	81537..82322	-	261	194445453	-	SNSL254_A0074	-	carnitinyl-CoA dehydratase
72	 50.90	0	82376..83929	-	517	194443937	-	SNSL254_A0075	-	probable crotonobetaine/carnitine-CoA ligase
73	 53.62	0	83992..85263	-	423	194442451	-	SNSL254_A0076	-	crotonobetainyl-CoA:carnitine CoA-transferase
74	 52.67	0	85321..86463	-	380	194443251	caiA	SNSL254_A0077	-	crotonobetainyl-CoA dehydrogenase
75	 54.08	0	86498..88015	-	505	194445728	caiT	SNSL254_A0078	-	L-carnitine/gamma-butyrobetaine antiporter
76	 25.64	-2	88157..88273	+	38	194446595	-	SNSL254_A0079	-	hypothetical protein
77	 28.49	-2	88243..88428	+	61	194445059	-	SNSL254_A0080	-	hypothetical protein
78	 52.14	0	88496..89266	+	256	194443512	fixA	SNSL254_A0081	-	protein FixA
79	 58.28	+1	89282..90223	+	313	194443704	fixB	SNSL254_A0082	-	electron transfer flavoprotein, alpha subunit
80	 56.02	0	90273..91559	+	428	194444813	fixC	SNSL254_A0083	-	protein FixC
81	 54.86	0	91556..91843	+	95	194445342	-	SNSL254_A0084	-	4Fe-4S ferredoxin, iron-sulfur binding domain protein
82	 53.73	0	91924..93330	+	468	194445455	-	SNSL254_A0085	-	putative metabolite transport protein YaaU
83	 48.48	0	93419..93649	+	76	194444528	-	SNSL254_A0086	-	hypothetical protein
84	 46.57	0	93943..94365	+	140	194444264	-	SNSL254_A0087	-	probable secreted protein
85	 46.74	0	94589..94879	-	96	194443497	-	SNSL254_A0088	-	probable secreted protein
86	 46.46	0	95777..97666	+	629	194442740	-	SNSL254_A0089	-	sulfatase
87	 52.92	0	98220..98750	+	176	194446537	kefF	SNSL254_A0090	-	glutathione-regulated potassium-efflux system ancillary protein kefF
88	 57.86	0	98743..100605	+	620	194446332	-	SNSL254_A0091	-	glutathione-regulated potassium-efflux system protein KefC
89	 53.75	0	100804..101283	+	159	194445577	folA	SNSL254_A0092	-	dihydrofolate reductase
90	 55.83	0	101389..102237	-	282	194442603	-	SNSL254_A0093	-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
91	 53.97	0	102248..102625	-	125	194443063	apaG	SNSL254_A0094	-	protein ApaG
92	 52.43	0	102628..103449	-	273	194446536	ksgA	SNSL254_A0095	-	dimethyladenosine transferase
93	 58.89	+1	103446..104435	-	329	194446479	pdxA	SNSL254_A0096	-	4-hydroxythreonine-4-phosphate dehydrogenase
94	 54.31	0	104435..105721	-	428	194444526	surA	SNSL254_A0097	-	chaperone/peptidyl-prolyl cis-trans isomerase SurA
95	 52.73	0	105775..108135	-	786	194445274	imp	SNSL254_A0098	-	LPS-assembly protein
96	 47.53	0	108145..108306	-	53	194444461	-	SNSL254_A0099	-	hypothetical protein
97	 54.00	0	108389..109201	+	270	194442223	-	SNSL254_A0100	-	DnaJ domain protein
98	 57.27	0	109297..109956	-	219	194443178	-	SNSL254_A0101	-	pseudouridine synthase, RluA family
99	 56.83	0	109968..112874	-	968	194446131	rapA	SNSL254_A0102	-	RNA polymerase associated protein RapA
100	 56.59	0	113048..115399	-	783	194446652	-	SNSL254_A0103	-	DNA polymerase II
51.87	MEAN

6.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.