IslandPath Analysis: Brucella melitensis 16M



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.71   STD DEV: 3.41
Brucella melitensis 16M chromosome II, complete sequence - 1..1177787
1139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.71	0	120..329	-	69	17988345	-	BMEII0001	-	hypothetical protein
2	 55.01	0	316..1044	-	242	17988346	-	BMEII0002	-	ribosomal-protein-serine acetyltransferase
3	 61.37	+1	1063..2175	-	370	17988347	-	BMEII0003	-	molybdenum ABC transporter ATP-binding protein
4	 59.97	0	2139..2825	-	228	17988348	modB	BMEII0004	-	molybdate ABC transporter permease protein
5	 56.84	0	2836..3537	-	233	17988349	-	BMEII0005	-	molybdate-binding periplasmic protein
6	 55.07	0	3631..3837	-	68	17988350	-	BMEII0006	-	hypothetical protein
7	 56.10	0	3872..4789	-	305	17988351	-	BMEII0007	-	rhodanese-related sulfurtransferase
8	 60.38	0	4974..5498	+	174	17988352	-	BMEII0008	-	hypothetical protein
9	 61.26	+1	5612..6295	+	227	17988353	-	BMEII0009	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
10	 64.16	+1	6361..8274	-	637	17988354	-	BMEII0010	-	hypothetical protein
11	 59.56	0	8615..10105	-	496	17988355	-	BMEII0011	-	transcriptional regulatory protein hydG
12	 57.29	0	10492..12315	+	607	17988356	-	BMEII0012	-	oligoendopeptidase F
13	 59.40	0	12325..13494	+	389	17988357	-	BMEII0013	-	para-aminobenzoate synthase component I
14	 59.69	0	13278..14108	+	276	17988358	-	BMEII0014	-	hypothetical protein
15	 57.74	0	14220..14981	+	253	17988359	-	BMEII0015	-	homospermidine synthase
16	 58.33	0	14863..15666	+	267	17988360	-	BMEII0016	-	homospermidine synthase
17	 60.10	0	15808..16188	+	126	17988361	-	BMEII0017	-	outer membrane lipoprotein
18	 58.17	0	16326..17384	+	352	17988362	hemH	BMEII0018	-	ferrochelatase
19	 58.97	0	17517..18503	+	328	17988363	-	BMEII0019	-	stomatin like protein
20	 57.48	0	18524..18991	+	155	17988364	-	BMEII0020	-	nodulation protein NFED, C-terminal only
21	 59.54	0	19082..20161	-	359	17988365	-	BMEII0021	-	polysialic acid capsule expression protein KPSF
22	 60.17	0	20563..21762	+	399	17988366	-	BMEII0022	-	hypothetical protein
23	 56.94	0	21815..22708	-	297	17988367	-	BMEII0023	-	UTP-glucose-1-phosphate uridylyltransferase
24	 59.40	0	23120..24358	+	412	17988368	-	BMEII0024	-	membrane-bound lytic murein transglycosylase B
25	 56.62	0	24862..25578	+	238	17988369	-	BMEII0025	-	attachment mediating protein VIRB1-like protein
26	 56.60	0	26014..26331	+	105	17988370	-	BMEII0026	-	VirB2
27	 55.27	0	26345..26695	+	116	17988371	-	BMEII0027	-	VirB3
28	 55.57	0	26695..29190	+	831	17988372	-	BMEII0028	-	ATPase VIRB4-like protein
29	 56.07	0	29195..29911	+	238	17988373	-	BMEII0029	-	VirB5
30	 55.36	0	30095..31138	+	347	17988374	-	BMEII0030	-	channel protein VIRB6-like protein
31	 58.05	0	31302..31475	+	57	17988375	-	BMEII0031	-	VirB7
32	 55.69	0	31478..32197	+	239	17988376	-	BMEII0032	-	VirB8
33	 58.47	0	32321..33064	+	247	17988377	-	BMEII0033	-	channel protein VIRB9-like protein
34	 57.39	0	33406..34203	+	265	17988378	-	BMEII0034	-	channel protein VIRB10-like protein
35	 58.66	0	34187..35272	+	361	17988379	-	BMEII0035	-	ATPase VIRB11-like protein
36	 57.61	0	35418..35936	+	172	17988380	-	BMEII0036	-	outer membrane protein OprF
37	 58.02	0	36376..37347	+	323	17988381	-	BMEII0037	-	putative cytoplasmic protein
38	 53.15	-1	37467..38960	+	497	17988382	-	BMEII0038	-	D-serine/D-alanine/glycine transporter
39	 60.48	0	39005..40459	-	484	161511181	gltD	BMEII0039	-	glutamate synthase subunit beta
40	 60.46	0	40541..45262	-	1573	17988384	-	BMEII0040	-	glutamate synthase [NADPH] large chain
41	 59.81	0	45935..46984	+	349	17988385	-	BMEII0041	-	low-specificity threonine aldolase
42	 56.05	0	47122..47592	-	156	17988386	-	BMEII0042	-	HEAT shock protein A
43	 54.76	0	47671..47922	-	83	17988387	-	BMEII0043	-	hypothetical protein
44	 53.43	-1	47895..48317	-	140	17988388	-	BMEII0044	-	hypothetical protein
45	 64.84	+2	48282..48554	+	90	17988389	-	BMEII0045	-	hypothetical protein
46	 48.61	-2	48649..48864	+	71	17988390	-	BMEII0046	-	hypothetical protein
47	 61.04	0	48904..49899	+	331	17988391	-	BMEII0047	-	lysophospholipase L2
48	 60.56	0	49950..50768	-	272	17988392	-	BMEII0048	-	extragenic suppressor protein SUHB
49	 58.14	0	50879..51769	-	296	17988393	-	BMEII0049	-	N-formylglutamate deformylase
50	 54.27	-1	52088..52450	+	120	17988394	-	BMEII0050	-	sensory transduction histidine kinase
51	 55.24	0	52836..53474	-	212	17988395	-	BMEII0051	-	nodulation protein W
52	 57.77	0	53471..54538	-	355	17988396	-	BMEII0052	-	sensory transduction histidine kinase
53	 59.11	0	54616..55356	-	246	17988397	-	BMEII0053	-	magnesium ABC transporter ATPase
54	 62.18	+1	55334..55489	-	51	17988398	-	BMEII0054	-	hypothetical protein
55	 64.10	+1	55668..56018	-	116	17988399	-	BMEII0055	-	hypothetical protein
56	 59.31	0	56103..58889	-	928	17988400	-	BMEII0056	-	magnesium ABC transporter ATPase
57	 59.57	0	58938..59219	+	93	17988401	-	BMEII0057	-	hypothetical protein
58	 65.31	+2	59173..59466	-	97	17988402	-	BMEII0058	-	hypothetical protein
59	 61.70	+1	59746..60531	-	261	17988403	-	BMEII0059	-	aminoquinate/shkimate dehydrogenase
60	 61.61	+1	60632..61897	-	421	17988404	-	BMEII0060	-	branched-chain alpha-keto acid dehydrogenase subunit E2
61	 62.33	+1	61916..64105	-	729	17988405	-	BMEII0061	-	2-oxoisovalerate dehydrogenase beta subunit
62	 63.22	+1	64215..64736	-	173	17988406	-	BMEII0062	-	carbonyl reductase
63	 58.94	0	64985..65722	-	245	17988407	-	BMEII0063	-	3-oxoacyl-(acyl-carrier protein) reductase
64	 61.08	0	65726..66208	-	160	17988408	-	BMEII0064	-	lactoylglutathione lyase
65	 58.72	0	66260..66976	-	238	17988409	-	BMEII0065	-	high-affinity branched-chain amino acid transport ATP-binding protein LIVF
66	 58.86	0	66976..67731	-	251	17988410	-	BMEII0066	-	high-affinity branched-chain amino acid transport ATP-binding protein LIVG
67	 61.26	+1	67728..68948	-	406	17988411	-	BMEII0067	-	high-affinity branched-chain amino acid transport system permease protein LIVM
68	 57.46	0	68952..69950	-	332	17988412	-	BMEII0068	-	high-affinity branched-chain amino acid transport system permease protein livH
69	 56.62	0	69992..70678	-	228	17988413	-	BMEII0069	-	leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor
70	 59.12	0	70700..71242	-	180	17988414	-	BMEII0070	-	leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor
71	 57.44	0	71453..72265	+	270	17988415	-	BMEII0071	-	GntR family transcriptional regulator
72	 61.27	+1	72311..73552	-	413	17988416	-	BMEII0072	-	extracytoplasmic function alternative sigma factor
73	 51.43	-1	73614..73928	+	104	17988417	-	BMEII0073	-	hypothetical protein
74	 56.41	0	74255..74800	+	181	17988418	-	BMEII0074	-	hypothetical protein
75	 57.92	0	74797..75585	+	262	17988419	-	BMEII0075	-	nitrate reductase
76	 58.65	0	75633..77042	-	469	17988420	-	BMEII0076	-	enterobactin synthetase component F
77	 60.30	0	77033..78289	+	418	17988421	-	BMEII0077	-	isochorismate synthase
78	 60.99	0	78396..80015	+	539	161511180	entE	BMEII0078	-	enterobactin synthase subunit E
79	 60.82	0	80067..80939	+	290	17988423	-	BMEII0079	-	isochorismatase
80	 61.27	+1	80900..81715	+	271	17988424	-	BMEII0080	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
81	 63.02	+1	81690..82430	+	246	17988425	-	BMEII0081	-	enterobactin synthetase component D
82	 58.13	0	82402..83010	-	202	17988426	-	BMEII0082	-	hypothetical protein
83	 54.32	0	83254..83820	+	188	17988427	-	BMEII0083	-	basic membrane protein A precursor
84	 57.44	0	83884..84360	+	158	17988428	-	BMEII0084	-	basic membrane protein A precursor
85	 62.40	+1	84363..85934	+	523	17988429	-	BMEII0085	-	galactoside transport ATP-binding protein mglA
86	 62.04	+1	85996..87075	+	359	17988430	-	BMEII0086	-	galactoside transport system permease protein mglC
87	 63.16	+1	87072..87983	+	303	17988431	-	BMEII0087	-	sugar ABC transporter, permease protein
88	 56.63	0	88009..89004	+	331	17988432	-	BMEII0088	-	inosine-uridine preferring nucleoside hydrolase
89	 61.89	+1	89081..90022	-	313	17988433	-	BMEII0089	-	ribokinase
90	 54.23	-1	90333..90533	+	66	17988434	-	BMEII0090	-	hypothetical protein
91	 53.98	-1	90768..91934	-	388	17988435	-	BMEII0091	-	replication protein C
92	 57.75	0	92332..93318	-	328	17988436	-	BMEII0092	-	replication protein B
93	 55.70	0	93383..94576	-	397	17988437	-	BMEII0093	-	replication protein A
94	 51.36	-1	94790..95194	+	134	17988438	-	BMEII0094	-	hypothetical protein
95	 49.33	-2	95161..95385	+	74	17988439	-	BMEII0095	-	hypothetical protein
96	 55.72	0	95406..96830	+	474	17988440	-	BMEII0096	-	coproporphyrinogen III oxidase
97	 58.46	0	97029..99050	+	673	17988441	-	BMEII0097	-	cation-transporting P-type ATPase B
98	 54.05	-1	99079..99807	-	242	17988442	-	BMEII0098	-	high-affinity branched-chain amino acid transport ATP-binding protein LIVF
99	 58.09	0	99804..100421	-	205	17988443	-	BMEII0099	-	high-affinity branched-chain amino acid transport ATP-binding protein LIVG
100	 55.10	0	100243..100536	-	97	17988444	-	BMEII0100	-	high-affinity branched-chain amino acid transport ATP-binding protein LIVG
57.71	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.