IslandPath Analysis: Onion yellows phytoplasma OY-M



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.56   STD DEV: 4.59
Onion yellows phytoplasma OY-M, complete genome - 1..860631
754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 23.16	-1	1..1524	+	507	39938487	dnaA	PAM001	-	chromosomal replication initiator protein
2	 21.11	-1	1831..2967	+	378	39938488	dnaN	PAM002	-	DNA polymerase III beta subunit
3	 22.86	-1	4447..4866	+	139	39938489	-	PAM003	-	hypothetical protein
4	 22.71	-1	4948..5220	+	90	39938490	-	PAM004	-	hypothetical protein
5	 19.18	-2	5467..6222	-	251	39938491	pgpB	PAM005	-	membrane-associated phospholipid phosphatase
6	 17.85	-2	6431..7063	-	210	39938492	-	PAM006	-	hypothetical protein
7	 28.09	0	7660..8976	+	438	39938493	folC	PAM007	-	folylpolyglutamate synthase
8	 25.00	0	10428..11675	+	415	39938494	rfaG	PAM008	-	1,2-diacylglycerol 3-glucosyltransferase
9	 24.65	0	12222..12509	+	95	161611250	rpsF	PAM009	-	30S ribosomal protein S6
10	 28.41	0	12524..12868	+	114	39938496	ssb	PAM010	-	single-stranded DNA-binding protein
11	 27.92	0	13006..13245	+	79	39938497	rpsR	PAM011	-	30S ribosomal protein S18
12	 29.53	0	13316..15889	+	857	39938498	-	PAM012	-	exopolyphosphatase-related protein
13	 29.54	0	15886..17229	+	447	39938499	dnaB	PAM013	-	replicative DNA helicase
14	 32.48	0	17300..18355	+	351	39938500	prfA	PAM014	-	protein chain release factor A
15	 29.21	0	18448..19005	+	185	39938501	sua5	PAM015	-	translation factor
16	 23.97	-1	19044..20015	-	323	39938502	holA	PAM016	-	DNA polymerase III delta subunit
17	 31.98	0	20275..20865	+	196	39938503	-	PAM017	-	GTPase EngB
18	 30.15	0	21671..23713	+	680	39938504	valS	PAM018	-	valyl-tRNA synthetase
19	 27.99	0	23899..24366	+	155	39938505	-	PAM019	-	hypothetical protein
20	 28.58	0	24424..26190	+	588	39938506	cbiO	PAM020	-	ABC-type cobalt transport system, ATPase component
21	 27.32	0	27755..28120	+	121	39938507	-	PAM021	-	hypothetical protein
22	 30.99	0	28890..29273	+	127	39938508	dppB	PAM022	-	ABC-type dipeptide/oligopeptide transport system, permease component
23	 27.10	0	29578..30684	+	368	39938509	-	PAM023	-	hypothetical protein
24	 30.30	0	30946..31737	+	263	39938510	-	PAM024	-	hypothetical protein
25	 31.12	0	32258..33295	+	345	39938511	dppD	PAM025	-	ABC-type dipeptide/oligopeptide transport system, ATPase component
26	 26.19	0	33626..34087	+	153	39938512	oppF	PAM026	-	ABC-type dipeptide/oligopeptide transport system, ATPase component
27	 25.43	0	34179..37277	-	1032	39938513	-	PAM027	-	hypothetical protein
28	 21.99	-1	37635..38057	+	140	39938514	ibpA	PAM028	-	molecular chaperone
29	 31.36	0	38180..38635	-	151	39938515	-	PAM029	-	hypothetical protein
30	 33.01	0	38845..41607	-	920	39938516	mgtA	PAM030	-	cation transport ATPase
31	 28.12	0	42625..43755	+	376	39938517	-	PAM031	-	hypothetical protein
32	 23.35	-1	44868..45518	+	216	39938518	-	PAM032	-	hypothetical protein
33	 22.66	-1	45800..46258	+	152	39938519	-	PAM033	-	hypothetical protein
34	 23.89	-1	46529..47068	+	179	39938520	-	PAM034	-	hypothetical protein
35	 26.55	0	47948..48301	+	117	39938521	-	PAM035	-	hypothetical protein
36	 29.26	0	48277..48939	+	220	39938522	-	PAM036	-	hypothetical protein
37	 23.65	-1	48879..49766	+	295	39938523	smc	PAM037	-	chromosome segregation ATPase-like protein
38	 30.77	0	50195..50506	+	103	39938524	-	PAM038	-	hypothetical protein
39	 26.14	0	50922..52589	+	555	39938525	-	PAM039	-	hypothetical protein
40	 26.07	0	52707..53312	+	201	39938526	fliA	PAM040	-	DNA-directed RNA polymerase specialized sigma subunit
41	 28.18	0	53544..53873	+	109	39938527	ssb	PAM041	-	single-stranded DNA-binding protein
42	 27.58	0	54352..55011	+	219	39938528	dam	PAM042	-	site-specific DNA methylase
43	 26.80	0	55120..55410	+	96	39938529	himA	PAM043	-	nucleoid DNA-binding protein
44	 29.43	0	55772..56566	+	264	39938530	-	PAM044	-	hypothetical protein
45	 32.32	0	56624..57805	+	393	39938531	-	PAM045	-	hypothetical protein
46	 29.08	0	58212..59057	+	281	39938532	-	PAM046	-	hypothetical protein
47	 29.68	0	58996..60171	+	391	39938533	-	PAM047	-	hypothetical protein
48	 34.16	+1	60238..60963	+	241	39938534	-	PAM048	-	hypothetical protein
49	 18.78	-2	61011..61388	+	125	39938535	-	PAM049	-	hypothetical protein
50	 38.29	+2	61925..62146	+	73	39938536	-	PAM050	-	hypothetical protein
51	 19.41	-1	62166..63443	+	425	39938537	-	PAM051	-	hypothetical protein
52	 20.82	-1	63851..65281	+	476	39938538	-	PAM052	-	hypothetical protein
53	 20.40	-1	65858..66352	+	164	39938539	-	PAM053	-	hypothetical protein
54	 37.53	+1	67342..69651	+	769	39938540	nrdA	PAM054	-	ribonucleotide reductase alpha subunit
55	 32.29	0	70037..71089	+	350	39938541	nrdF	PAM055	-	ribonucleotide-diphosphate reductase subunit beta
56	 24.56	0	73506..73904	+	132	39938542	-	PAM056	-	hypothetical protein
57	 19.87	-1	74018..74953	+	311	39938543	-	PAM057	-	hypothetical protein
58	 23.51	-1	75777..76295	+	172	39938544	mscL	PAM058	-	large-conductance mechanosensitive channel
59	 26.49	0	76501..78225	+	574	39938545	mdlB	PAM059	-	ABC-type multidrug/protein/lipid transport system, ATPase component
60	 25.71	0	80717..81424	+	235	39938546	-	PAM060	-	hypothetical protein
61	 28.71	0	81782..82084	+	100	39938547	-	PAM061	-	hypothetical protein
62	 31.69	0	83133..83315	+	60	39938548	-	PAM062	-	hypothetical protein
63	 26.46	0	83594..83884	+	96	39938549	himA	PAM063	-	nucleoid DNA-binding protein
64	 31.34	0	84325..86229	+	634	39938550	hflB	PAM064	-	ATP-dependent Zn protease
65	 20.15	-1	86315..86587	+	90	39938551	-	PAM065	-	hypothetical protein
66	 29.50	0	86592..87452	+	286	39938552	-	PAM066	-	hypothetical protein
67	 30.77	0	87922..88545	+	207	39938553	-	PAM067	-	hypothetical protein
68	 31.13	0	88612..89337	+	241	39938554	-	PAM068	-	hypothetical protein
69	 17.81	-2	89402..90103	+	233	39938555	-	PAM069	-	hypothetical protein
70	 22.69	-1	90298..90870	+	190	39938556	-	PAM070	-	hypothetical protein
71	 33.02	0	91415..92062	+	215	39938557	-	PAM071	-	hypothetical protein
72	 30.77	0	92123..92512	+	129	39938558	-	PAM072	-	hypothetical protein
73	 26.95	0	92749..93516	+	255	39938559	-	PAM073	-	hypothetical protein
74	 29.73	0	93535..95034	+	499	39938560	dnaB	PAM074	-	replicative DNA helicase
75	 27.08	0	95046..95924	+	292	39938561	-	PAM075	-	hypothetical protein
76	 27.36	0	99183..100070	+	295	39938562	-	PAM076	-	hypothetical protein
77	 25.67	0	100067..101188	+	373	39938563	artM	PAM077	-	ABC-type amino acid transport system, permease component
78	 26.85	0	101697..103502	+	601	39938564	-	PAM078	-	ABC-type amino acid transport system, permease component
79	 28.75	0	103752..104231	+	159	39938565	glnQ	PAM079	-	ABC-type polar amino acid transport system, ATPase component
80	 26.42	0	104409..104654	+	81	39938566	-	PAM080	-	hypothetical protein
81	 27.20	0	105231..105491	+	86	39938567	rpsT	PAM081	-	30S ribosomal protein S20
82	 26.57	0	105664..105870	-	68	39938568	-	PAM082	-	hypothetical protein
83	 32.31	0	106430..107704	+	424	39938569	serS	PAM083	-	seryl-tRNA synthetase
84	 31.17	0	107898..108221	+	107	39938570	-	PAM084	-	hypothetical protein
85	 33.95	+1	108383..109348	+	321	39938571	-	PAM085	-	hypothetical protein
86	 33.01	0	109530..109838	+	102	161611249	rplU	PAM086	-	50S ribosomal protein L21
87	 27.98	0	109844..110179	+	111	39938573	-	PAM087	-	hypothetical protein
88	 35.13	+1	110181..110459	+	92	39938574	rpmA	PAM088	-	50S ribosomal protein L27
89	 32.70	0	110486..111754	+	422	39938575	obgE	PAM089	-	GTPase ObgE
90	 22.39	-1	112097..112297	+	66	39938576	gepA	PAM090	-	uncharacterized phage-associated protein
91	 25.59	0	113366..114295	-	309	39938577	-	PAM091	-	hypothetical protein
92	 30.19	0	115631..116776	+	381	39938578	znuA	PAM092	-	ABC-type Mn/Zn transport system, periplasmic Mn/Zn-binding protein
93	 30.46	0	116807..117571	+	254	39938579	znuC	PAM093	-	ABC-type Mn/Zn transport system, ATPase component
94	 27.92	0	117672..119831	+	719	39938580	znuB	PAM094	-	ABC-type Mn/Zn transport system, permease component
95	 26.49	0	120521..121441	+	306	39938581	-	PAM095	-	hypothetical protein
96	 26.53	0	121578..123077	+	499	39938582	phnL	PAM096	-	ABC-type transport system, involved in lipoprotein release, ATPase component
97	 29.95	0	123489..124316	+	275	39938583	nlpA	PAM097	-	ABC-type uncharacterized transport system, periplasmic component
98	 30.79	0	124440..124871	+	143	39938584	-	PAM098	-	hypothetical protein
99	 29.38	0	124840..125193	+	117	39938585	-	PAM099	-	hypothetical protein
100	 28.08	0	125336..125773	+	145	39938586	iscU	PAM100	-	nifU-like protein
28.56	MEAN

4.59	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.